Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02276 and MPMX20_02277 are separated by 202 nucleotides MPMX20_02277 and MPMX20_02278 overlap by 13 nucleotides MPMX20_02278 and MPMX20_02279 are separated by 143 nucleotides
MPMX20_02276: MPMX20_02276 - Altronate oxidoreductase, at 2,387,153 to 2,388,604
_02276
MPMX20_02277: MPMX20_02277 - hypothetical protein, at 2,388,807 to 2,389,721
_02277
MPMX20_02278: MPMX20_02278 - hypothetical protein, at 2,389,709 to 2,390,257
_02278
MPMX20_02279: MPMX20_02279 - hypothetical protein, at 2,390,401 to 2,390,841
_02279
Position (kb)
2388
2389
2390 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 2387.830 kb on + strand, within MPMX20_02276 at 2388.004 kb on + strand, within MPMX20_02276 at 2388.010 kb on - strand, within MPMX20_02276 at 2388.081 kb on + strand, within MPMX20_02276 at 2388.091 kb on - strand, within MPMX20_02276 at 2388.225 kb on + strand, within MPMX20_02276 at 2388.301 kb on + strand, within MPMX20_02276 at 2388.383 kb on + strand, within MPMX20_02276 at 2388.391 kb on - strand, within MPMX20_02276 at 2388.391 kb on - strand, within MPMX20_02276 at 2388.402 kb on + strand, within MPMX20_02276 at 2388.421 kb on + strand, within MPMX20_02276 at 2388.421 kb on + strand, within MPMX20_02276 at 2388.421 kb on + strand, within MPMX20_02276 at 2388.429 kb on - strand, within MPMX20_02276 at 2388.453 kb on - strand, within MPMX20_02276 at 2388.471 kb on + strand at 2388.471 kb on + strand at 2388.517 kb on + strand at 2388.517 kb on + strand at 2388.525 kb on - strand at 2388.546 kb on - strand at 2388.558 kb on + strand at 2388.565 kb on + strand at 2388.752 kb on + strand at 2388.859 kb on + strand at 2388.867 kb on - strand at 2388.972 kb on + strand, within MPMX20_02277 at 2389.042 kb on + strand, within MPMX20_02277 at 2389.050 kb on - strand, within MPMX20_02277 at 2389.058 kb on + strand, within MPMX20_02277 at 2389.114 kb on + strand, within MPMX20_02277 at 2389.134 kb on - strand, within MPMX20_02277 at 2389.178 kb on + strand, within MPMX20_02277 at 2389.185 kb on + strand, within MPMX20_02277 at 2389.193 kb on - strand, within MPMX20_02277 at 2389.297 kb on - strand, within MPMX20_02277 at 2389.336 kb on + strand, within MPMX20_02277 at 2389.466 kb on - strand, within MPMX20_02277 at 2389.466 kb on - strand, within MPMX20_02277 at 2389.500 kb on + strand, within MPMX20_02277 at 2389.508 kb on - strand, within MPMX20_02277 at 2389.513 kb on - strand, within MPMX20_02277 at 2389.526 kb on - strand, within MPMX20_02277 at 2389.554 kb on - strand, within MPMX20_02277 at 2389.628 kb on + strand, within MPMX20_02277 at 2389.637 kb on + strand at 2389.650 kb on - strand at 2389.676 kb on - strand at 2389.715 kb on + strand at 2389.717 kb on + strand at 2389.723 kb on - strand at 2389.728 kb on - strand at 2389.756 kb on + strand at 2389.773 kb on + strand, within MPMX20_02278 at 2389.823 kb on + strand, within MPMX20_02278 at 2389.844 kb on + strand, within MPMX20_02278 at 2389.844 kb on + strand, within MPMX20_02278 at 2389.852 kb on - strand, within MPMX20_02278 at 2389.881 kb on - strand, within MPMX20_02278 at 2389.917 kb on + strand, within MPMX20_02278 at 2389.920 kb on - strand, within MPMX20_02278 at 2389.938 kb on + strand, within MPMX20_02278 at 2389.938 kb on + strand, within MPMX20_02278 at 2389.938 kb on + strand, within MPMX20_02278 at 2389.938 kb on + strand, within MPMX20_02278 at 2389.939 kb on - strand, within MPMX20_02278 at 2389.946 kb on - strand, within MPMX20_02278 at 2389.970 kb on - strand, within MPMX20_02278 at 2389.992 kb on + strand, within MPMX20_02278 at 2390.031 kb on + strand, within MPMX20_02278 at 2390.054 kb on - strand, within MPMX20_02278 at 2390.054 kb on - strand, within MPMX20_02278 at 2390.054 kb on - strand, within MPMX20_02278 at 2390.054 kb on - strand, within MPMX20_02278 at 2390.054 kb on - strand, within MPMX20_02278 at 2390.097 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.127 kb on + strand, within MPMX20_02278 at 2390.134 kb on + strand, within MPMX20_02278 at 2390.134 kb on - strand, within MPMX20_02278 at 2390.134 kb on - strand, within MPMX20_02278 at 2390.134 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.135 kb on - strand, within MPMX20_02278 at 2390.137 kb on - strand, within MPMX20_02278 at 2390.142 kb on - strand, within MPMX20_02278 at 2390.142 kb on - strand, within MPMX20_02278 at 2390.142 kb on - strand, within MPMX20_02278 at 2390.158 kb on + strand, within MPMX20_02278 at 2390.172 kb on + strand, within MPMX20_02278 at 2390.172 kb on + strand, within MPMX20_02278 at 2390.172 kb on + strand, within MPMX20_02278 at 2390.191 kb on + strand, within MPMX20_02278 at 2390.202 kb on + strand, within MPMX20_02278 at 2390.205 kb on - strand at 2390.207 kb on + strand at 2390.230 kb on + strand at 2390.272 kb on + strand at 2390.272 kb on + strand at 2390.272 kb on + strand at 2390.272 kb on + strand at 2390.280 kb on - strand at 2390.343 kb on - strand at 2390.353 kb on + strand at 2390.397 kb on + strand at 2390.397 kb on + strand at 2390.405 kb on - strand at 2390.405 kb on - strand at 2390.405 kb on - strand at 2390.419 kb on + strand at 2390.420 kb on - strand at 2390.427 kb on - strand at 2390.441 kb on - strand at 2390.473 kb on - strand, within MPMX20_02279 at 2390.483 kb on + strand, within MPMX20_02279 at 2390.527 kb on - strand, within MPMX20_02279 at 2390.621 kb on + strand, within MPMX20_02279 at 2390.627 kb on - strand, within MPMX20_02279 at 2390.680 kb on + strand, within MPMX20_02279
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 2,387,830 + MPMX20_02276 0.47 +1.2 2,388,004 + MPMX20_02276 0.59 +0.3 2,388,010 - MPMX20_02276 0.59 +1.0 2,388,081 + MPMX20_02276 0.64 -1.1 2,388,091 - MPMX20_02276 0.65 -3.0 2,388,225 + MPMX20_02276 0.74 -3.8 2,388,301 + MPMX20_02276 0.79 -2.8 2,388,383 + MPMX20_02276 0.85 -0.5 2,388,391 - MPMX20_02276 0.85 +0.5 2,388,391 - MPMX20_02276 0.85 +0.5 2,388,402 + MPMX20_02276 0.86 +1.1 2,388,421 + MPMX20_02276 0.87 -1.1 2,388,421 + MPMX20_02276 0.87 -1.9 2,388,421 + MPMX20_02276 0.87 +1.4 2,388,429 - MPMX20_02276 0.88 +2.4 2,388,453 - MPMX20_02276 0.90 -2.2 2,388,471 + -3.1 2,388,471 + -0.9 2,388,517 + -3.0 2,388,517 + +0.3 2,388,525 - -2.2 2,388,546 - +2.3 2,388,558 + -1.5 2,388,565 + -2.3 2,388,752 + +1.8 2,388,859 + -2.7 2,388,867 - +2.4 2,388,972 + MPMX20_02277 0.18 +1.4 2,389,042 + MPMX20_02277 0.26 -0.0 2,389,050 - MPMX20_02277 0.27 +2.2 2,389,058 + MPMX20_02277 0.27 -0.8 2,389,114 + MPMX20_02277 0.34 +2.5 2,389,134 - MPMX20_02277 0.36 +2.2 2,389,178 + MPMX20_02277 0.41 -2.1 2,389,185 + MPMX20_02277 0.41 +1.8 2,389,193 - MPMX20_02277 0.42 -3.5 2,389,297 - MPMX20_02277 0.54 +2.1 2,389,336 + MPMX20_02277 0.58 +0.5 2,389,466 - MPMX20_02277 0.72 -3.0 2,389,466 - MPMX20_02277 0.72 +2.8 2,389,500 + MPMX20_02277 0.76 -1.7 2,389,508 - MPMX20_02277 0.77 -3.4 2,389,513 - MPMX20_02277 0.77 -2.7 2,389,526 - MPMX20_02277 0.79 +2.0 2,389,554 - MPMX20_02277 0.82 -1.7 2,389,628 + MPMX20_02277 0.90 +1.9 2,389,637 + -1.7 2,389,650 - -1.8 2,389,676 - -5.0 2,389,715 + -0.1 2,389,717 + +3.2 2,389,723 - -3.3 2,389,728 - +1.0 2,389,756 + +1.2 2,389,773 + MPMX20_02278 0.12 -0.2 2,389,823 + MPMX20_02278 0.21 -2.6 2,389,844 + MPMX20_02278 0.25 -2.4 2,389,844 + MPMX20_02278 0.25 -2.5 2,389,852 - MPMX20_02278 0.26 +1.1 2,389,881 - MPMX20_02278 0.31 +1.5 2,389,917 + MPMX20_02278 0.38 -0.3 2,389,920 - MPMX20_02278 0.38 -2.6 2,389,938 + MPMX20_02278 0.42 -2.0 2,389,938 + MPMX20_02278 0.42 -1.9 2,389,938 + MPMX20_02278 0.42 -3.0 2,389,938 + MPMX20_02278 0.42 +2.5 2,389,939 - MPMX20_02278 0.42 -1.1 2,389,946 - MPMX20_02278 0.43 -1.1 2,389,970 - MPMX20_02278 0.48 -2.8 2,389,992 + MPMX20_02278 0.52 +4.2 2,390,031 + MPMX20_02278 0.59 +2.8 2,390,054 - MPMX20_02278 0.63 -2.5 2,390,054 - MPMX20_02278 0.63 -0.5 2,390,054 - MPMX20_02278 0.63 +1.0 2,390,054 - MPMX20_02278 0.63 -0.1 2,390,054 - MPMX20_02278 0.63 +2.5 2,390,097 + MPMX20_02278 0.71 -1.0 2,390,127 + MPMX20_02278 0.76 -1.8 2,390,127 + MPMX20_02278 0.76 +4.2 2,390,127 + MPMX20_02278 0.76 -1.8 2,390,127 + MPMX20_02278 0.76 +0.6 2,390,127 + MPMX20_02278 0.76 -2.5 2,390,127 + MPMX20_02278 0.76 +0.5 2,390,127 + MPMX20_02278 0.76 +1.2 2,390,127 + MPMX20_02278 0.76 +0.0 2,390,127 + MPMX20_02278 0.76 -2.2 2,390,127 + MPMX20_02278 0.76 +1.8 2,390,134 + MPMX20_02278 0.77 +2.2 2,390,134 - MPMX20_02278 0.77 +1.4 2,390,134 - MPMX20_02278 0.77 -2.5 2,390,134 - MPMX20_02278 0.77 +2.0 2,390,135 - MPMX20_02278 0.78 -3.6 2,390,135 - MPMX20_02278 0.78 -2.1 2,390,135 - MPMX20_02278 0.78 -3.1 2,390,135 - MPMX20_02278 0.78 -0.4 2,390,135 - MPMX20_02278 0.78 +0.4 2,390,135 - MPMX20_02278 0.78 -1.9 2,390,135 - MPMX20_02278 0.78 +0.9 2,390,135 - MPMX20_02278 0.78 +0.0 2,390,135 - MPMX20_02278 0.78 -1.9 2,390,135 - MPMX20_02278 0.78 +1.0 2,390,135 - MPMX20_02278 0.78 -0.3 2,390,135 - MPMX20_02278 0.78 +1.1 2,390,135 - MPMX20_02278 0.78 -3.5 2,390,135 - MPMX20_02278 0.78 -2.1 2,390,135 - MPMX20_02278 0.78 -3.5 2,390,135 - MPMX20_02278 0.78 +1.7 2,390,135 - MPMX20_02278 0.78 -1.0 2,390,135 - MPMX20_02278 0.78 +1.7 2,390,135 - MPMX20_02278 0.78 +1.5 2,390,135 - MPMX20_02278 0.78 +1.9 2,390,135 - MPMX20_02278 0.78 +2.0 2,390,135 - MPMX20_02278 0.78 -1.1 2,390,137 - MPMX20_02278 0.78 -2.4 2,390,142 - MPMX20_02278 0.79 +1.0 2,390,142 - MPMX20_02278 0.79 -2.1 2,390,142 - MPMX20_02278 0.79 -2.7 2,390,158 + MPMX20_02278 0.82 -0.1 2,390,172 + MPMX20_02278 0.84 +1.6 2,390,172 + MPMX20_02278 0.84 -3.5 2,390,172 + MPMX20_02278 0.84 +0.1 2,390,191 + MPMX20_02278 0.88 +0.1 2,390,202 + MPMX20_02278 0.90 +2.4 2,390,205 - -0.3 2,390,207 + +2.4 2,390,230 + -2.0 2,390,272 + +0.5 2,390,272 + -1.1 2,390,272 + -2.0 2,390,272 + -3.1 2,390,280 - -2.0 2,390,343 - -3.0 2,390,353 + +0.0 2,390,397 + -0.3 2,390,397 + -1.3 2,390,405 - +1.0 2,390,405 - +0.6 2,390,405 - +2.8 2,390,419 + +1.8 2,390,420 - +0.4 2,390,427 - -0.2 2,390,441 - -2.0 2,390,473 - MPMX20_02279 0.16 -3.3 2,390,483 + MPMX20_02279 0.19 -2.4 2,390,527 - MPMX20_02279 0.29 +2.4 2,390,621 + MPMX20_02279 0.50 +1.8 2,390,627 - MPMX20_02279 0.51 -1.7 2,390,680 + MPMX20_02279 0.63 -2.9
Or see this region's nucleotide sequence