Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02119 and MPMX20_02120 are separated by 186 nucleotides MPMX20_02120 and MPMX20_02121 are separated by 330 nucleotides MPMX20_02121 and MPMX20_02122 overlap by 90 nucleotides MPMX20_02122 and MPMX20_02123 are separated by 136 nucleotides
MPMX20_02119: MPMX20_02119 - hypothetical protein, at 2,209,050 to 2,210,015
_02119
MPMX20_02120: MPMX20_02120 - hypothetical protein, at 2,210,202 to 2,210,495
_02120
MPMX20_02121: MPMX20_02121 - hypothetical protein, at 2,210,826 to 2,211,086
_02121
MPMX20_02122: MPMX20_02122 - HTH-type transcriptional regulator DmlR, at 2,210,997 to 2,211,899
_02122
MPMX20_02123: MPMX20_02123 - putative oxidoreductase, at 2,212,036 to 2,212,782
_02123
Position (kb)
2210
2211
2212 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 2209.929 kb on + strand at 2210.189 kb on - strand at 2210.398 kb on - strand, within MPMX20_02120 at 2210.913 kb on - strand, within MPMX20_02121 at 2210.918 kb on - strand, within MPMX20_02121 at 2210.918 kb on - strand, within MPMX20_02121 at 2210.933 kb on + strand, within MPMX20_02121 at 2210.951 kb on - strand, within MPMX20_02121 at 2210.951 kb on - strand, within MPMX20_02121 at 2210.981 kb on - strand, within MPMX20_02121 at 2210.987 kb on - strand, within MPMX20_02121 at 2211.017 kb on - strand at 2211.117 kb on - strand, within MPMX20_02122 at 2211.117 kb on - strand, within MPMX20_02122 at 2211.117 kb on - strand, within MPMX20_02122 at 2211.117 kb on - strand, within MPMX20_02122 at 2211.117 kb on - strand, within MPMX20_02122 at 2211.131 kb on - strand, within MPMX20_02122 at 2211.140 kb on - strand, within MPMX20_02122 at 2211.141 kb on - strand, within MPMX20_02122 at 2211.141 kb on - strand, within MPMX20_02122 at 2211.141 kb on - strand, within MPMX20_02122 at 2211.141 kb on - strand, within MPMX20_02122 at 2211.141 kb on - strand, within MPMX20_02122 at 2211.181 kb on - strand, within MPMX20_02122 at 2211.186 kb on - strand, within MPMX20_02122 at 2211.194 kb on - strand, within MPMX20_02122 at 2211.194 kb on - strand, within MPMX20_02122 at 2211.194 kb on - strand, within MPMX20_02122 at 2211.199 kb on - strand, within MPMX20_02122 at 2211.199 kb on - strand, within MPMX20_02122 at 2211.199 kb on - strand, within MPMX20_02122 at 2211.201 kb on - strand, within MPMX20_02122 at 2211.211 kb on - strand, within MPMX20_02122 at 2211.216 kb on - strand, within MPMX20_02122 at 2211.239 kb on - strand, within MPMX20_02122 at 2211.249 kb on - strand, within MPMX20_02122 at 2211.249 kb on - strand, within MPMX20_02122 at 2211.249 kb on - strand, within MPMX20_02122 at 2211.259 kb on - strand, within MPMX20_02122 at 2211.275 kb on - strand, within MPMX20_02122 at 2211.298 kb on - strand, within MPMX20_02122 at 2211.323 kb on + strand, within MPMX20_02122 at 2211.328 kb on - strand, within MPMX20_02122 at 2211.331 kb on - strand, within MPMX20_02122 at 2211.331 kb on - strand, within MPMX20_02122 at 2211.331 kb on - strand, within MPMX20_02122 at 2211.332 kb on - strand, within MPMX20_02122 at 2211.364 kb on - strand, within MPMX20_02122 at 2211.364 kb on - strand, within MPMX20_02122 at 2211.364 kb on - strand, within MPMX20_02122 at 2211.385 kb on + strand, within MPMX20_02122 at 2211.393 kb on - strand, within MPMX20_02122 at 2211.410 kb on - strand, within MPMX20_02122 at 2211.414 kb on - strand, within MPMX20_02122 at 2211.414 kb on - strand, within MPMX20_02122 at 2211.414 kb on - strand, within MPMX20_02122 at 2211.433 kb on - strand, within MPMX20_02122 at 2211.433 kb on - strand, within MPMX20_02122 at 2211.443 kb on + strand, within MPMX20_02122 at 2211.443 kb on + strand, within MPMX20_02122 at 2211.448 kb on + strand, within MPMX20_02122 at 2211.451 kb on - strand, within MPMX20_02122 at 2211.451 kb on - strand, within MPMX20_02122 at 2211.451 kb on - strand, within MPMX20_02122 at 2211.451 kb on - strand, within MPMX20_02122 at 2211.451 kb on - strand, within MPMX20_02122 at 2211.451 kb on - strand, within MPMX20_02122 at 2211.451 kb on - strand, within MPMX20_02122 at 2211.453 kb on + strand, within MPMX20_02122 at 2211.453 kb on + strand, within MPMX20_02122 at 2211.455 kb on + strand, within MPMX20_02122 at 2211.455 kb on + strand, within MPMX20_02122 at 2211.461 kb on - strand, within MPMX20_02122 at 2211.524 kb on + strand, within MPMX20_02122 at 2211.535 kb on + strand, within MPMX20_02122 at 2211.541 kb on + strand, within MPMX20_02122 at 2211.542 kb on + strand, within MPMX20_02122 at 2211.542 kb on + strand, within MPMX20_02122 at 2211.547 kb on + strand, within MPMX20_02122 at 2211.547 kb on + strand, within MPMX20_02122 at 2211.547 kb on + strand, within MPMX20_02122 at 2211.550 kb on - strand, within MPMX20_02122 at 2211.550 kb on - strand, within MPMX20_02122 at 2211.550 kb on - strand, within MPMX20_02122 at 2211.550 kb on - strand, within MPMX20_02122 at 2211.550 kb on - strand, within MPMX20_02122 at 2211.555 kb on - strand, within MPMX20_02122 at 2211.555 kb on - strand, within MPMX20_02122 at 2211.602 kb on - strand, within MPMX20_02122 at 2211.602 kb on - strand, within MPMX20_02122 at 2211.602 kb on - strand, within MPMX20_02122 at 2211.614 kb on - strand, within MPMX20_02122 at 2211.621 kb on + strand, within MPMX20_02122 at 2211.621 kb on + strand, within MPMX20_02122 at 2211.621 kb on + strand, within MPMX20_02122 at 2211.621 kb on + strand, within MPMX20_02122 at 2211.621 kb on + strand, within MPMX20_02122 at 2211.629 kb on - strand, within MPMX20_02122 at 2211.635 kb on - strand, within MPMX20_02122 at 2211.635 kb on - strand, within MPMX20_02122 at 2211.668 kb on - strand, within MPMX20_02122 at 2211.743 kb on - strand, within MPMX20_02122 at 2211.750 kb on - strand, within MPMX20_02122 at 2211.784 kb on - strand, within MPMX20_02122 at 2211.819 kb on + strand at 2211.821 kb on - strand at 2211.827 kb on - strand at 2211.827 kb on - strand at 2211.827 kb on - strand at 2211.899 kb on + strand at 2211.907 kb on - strand at 2211.925 kb on + strand at 2211.937 kb on - strand at 2211.957 kb on + strand at 2211.970 kb on + strand at 2211.971 kb on + strand at 2211.971 kb on + strand at 2211.971 kb on + strand at 2211.971 kb on + strand at 2211.971 kb on + strand at 2211.971 kb on + strand at 2211.974 kb on - strand at 2211.978 kb on - strand at 2211.978 kb on - strand at 2211.979 kb on - strand at 2211.979 kb on - strand at 2212.063 kb on + strand at 2212.065 kb on + strand at 2212.065 kb on + strand at 2212.065 kb on + strand at 2212.065 kb on + strand at 2212.067 kb on + strand at 2212.071 kb on - strand at 2212.073 kb on - strand at 2212.073 kb on - strand at 2212.073 kb on - strand at 2212.073 kb on - strand at 2212.080 kb on - strand at 2212.080 kb on - strand at 2212.085 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 2,209,929 + +0.1 2,210,189 - -1.5 2,210,398 - MPMX20_02120 0.67 +0.5 2,210,913 - MPMX20_02121 0.33 +0.8 2,210,918 - MPMX20_02121 0.35 +3.1 2,210,918 - MPMX20_02121 0.35 +0.7 2,210,933 + MPMX20_02121 0.41 -0.2 2,210,951 - MPMX20_02121 0.48 +3.4 2,210,951 - MPMX20_02121 0.48 -1.8 2,210,981 - MPMX20_02121 0.59 +1.2 2,210,987 - MPMX20_02121 0.62 +2.9 2,211,017 - +1.8 2,211,117 - MPMX20_02122 0.13 -2.4 2,211,117 - MPMX20_02122 0.13 +0.2 2,211,117 - MPMX20_02122 0.13 +0.6 2,211,117 - MPMX20_02122 0.13 +1.5 2,211,117 - MPMX20_02122 0.13 +0.1 2,211,131 - MPMX20_02122 0.15 +1.6 2,211,140 - MPMX20_02122 0.16 -2.4 2,211,141 - MPMX20_02122 0.16 +2.1 2,211,141 - MPMX20_02122 0.16 -2.3 2,211,141 - MPMX20_02122 0.16 -1.5 2,211,141 - MPMX20_02122 0.16 +1.0 2,211,141 - MPMX20_02122 0.16 +0.0 2,211,181 - MPMX20_02122 0.20 +1.6 2,211,186 - MPMX20_02122 0.21 +0.7 2,211,194 - MPMX20_02122 0.22 -0.0 2,211,194 - MPMX20_02122 0.22 -1.5 2,211,194 - MPMX20_02122 0.22 -2.8 2,211,199 - MPMX20_02122 0.22 -1.6 2,211,199 - MPMX20_02122 0.22 -1.4 2,211,199 - MPMX20_02122 0.22 -0.5 2,211,201 - MPMX20_02122 0.23 -0.2 2,211,211 - MPMX20_02122 0.24 -0.7 2,211,216 - MPMX20_02122 0.24 +1.0 2,211,239 - MPMX20_02122 0.27 +0.5 2,211,249 - MPMX20_02122 0.28 +1.7 2,211,249 - MPMX20_02122 0.28 +2.3 2,211,249 - MPMX20_02122 0.28 -0.5 2,211,259 - MPMX20_02122 0.29 -1.6 2,211,275 - MPMX20_02122 0.31 -1.2 2,211,298 - MPMX20_02122 0.33 -2.9 2,211,323 + MPMX20_02122 0.36 -1.7 2,211,328 - MPMX20_02122 0.37 -2.9 2,211,331 - MPMX20_02122 0.37 -1.6 2,211,331 - MPMX20_02122 0.37 +1.7 2,211,331 - MPMX20_02122 0.37 +1.1 2,211,332 - MPMX20_02122 0.37 -3.3 2,211,364 - MPMX20_02122 0.41 -2.4 2,211,364 - MPMX20_02122 0.41 +2.1 2,211,364 - MPMX20_02122 0.41 -2.8 2,211,385 + MPMX20_02122 0.43 -0.5 2,211,393 - MPMX20_02122 0.44 -0.9 2,211,410 - MPMX20_02122 0.46 +1.2 2,211,414 - MPMX20_02122 0.46 +1.1 2,211,414 - MPMX20_02122 0.46 +1.7 2,211,414 - MPMX20_02122 0.46 -3.4 2,211,433 - MPMX20_02122 0.48 -1.6 2,211,433 - MPMX20_02122 0.48 +2.7 2,211,443 + MPMX20_02122 0.49 -0.5 2,211,443 + MPMX20_02122 0.49 -0.5 2,211,448 + MPMX20_02122 0.50 +2.0 2,211,451 - MPMX20_02122 0.50 +1.4 2,211,451 - MPMX20_02122 0.50 -1.7 2,211,451 - MPMX20_02122 0.50 +0.9 2,211,451 - MPMX20_02122 0.50 -1.7 2,211,451 - MPMX20_02122 0.50 +2.8 2,211,451 - MPMX20_02122 0.50 +0.5 2,211,451 - MPMX20_02122 0.50 -0.2 2,211,453 + MPMX20_02122 0.50 -2.4 2,211,453 + MPMX20_02122 0.50 +0.4 2,211,455 + MPMX20_02122 0.51 +0.1 2,211,455 + MPMX20_02122 0.51 +1.1 2,211,461 - MPMX20_02122 0.51 -1.9 2,211,524 + MPMX20_02122 0.58 +0.4 2,211,535 + MPMX20_02122 0.60 -4.0 2,211,541 + MPMX20_02122 0.60 +0.1 2,211,542 + MPMX20_02122 0.60 -1.4 2,211,542 + MPMX20_02122 0.60 -2.3 2,211,547 + MPMX20_02122 0.61 +1.5 2,211,547 + MPMX20_02122 0.61 -2.0 2,211,547 + MPMX20_02122 0.61 -1.6 2,211,550 - MPMX20_02122 0.61 +1.9 2,211,550 - MPMX20_02122 0.61 +1.9 2,211,550 - MPMX20_02122 0.61 +1.1 2,211,550 - MPMX20_02122 0.61 +1.3 2,211,550 - MPMX20_02122 0.61 -0.6 2,211,555 - MPMX20_02122 0.62 +2.4 2,211,555 - MPMX20_02122 0.62 +2.1 2,211,602 - MPMX20_02122 0.67 +0.8 2,211,602 - MPMX20_02122 0.67 +2.5 2,211,602 - MPMX20_02122 0.67 +2.5 2,211,614 - MPMX20_02122 0.68 +0.6 2,211,621 + MPMX20_02122 0.69 -0.5 2,211,621 + MPMX20_02122 0.69 -1.6 2,211,621 + MPMX20_02122 0.69 -2.3 2,211,621 + MPMX20_02122 0.69 +0.7 2,211,621 + MPMX20_02122 0.69 +2.4 2,211,629 - MPMX20_02122 0.70 +1.3 2,211,635 - MPMX20_02122 0.71 -0.2 2,211,635 - MPMX20_02122 0.71 +1.4 2,211,668 - MPMX20_02122 0.74 -0.0 2,211,743 - MPMX20_02122 0.83 -1.3 2,211,750 - MPMX20_02122 0.83 -0.7 2,211,784 - MPMX20_02122 0.87 +0.1 2,211,819 + +0.1 2,211,821 - +1.3 2,211,827 - +3.4 2,211,827 - +0.4 2,211,827 - -1.6 2,211,899 + +0.1 2,211,907 - +2.3 2,211,925 + +0.1 2,211,937 - +2.8 2,211,957 + +2.8 2,211,970 + -1.2 2,211,971 + -1.5 2,211,971 + +1.7 2,211,971 + +0.4 2,211,971 + +1.0 2,211,971 + +1.6 2,211,971 + +2.0 2,211,974 - +0.2 2,211,978 - -1.5 2,211,978 - +0.1 2,211,979 - -2.9 2,211,979 - -2.5 2,212,063 + -2.5 2,212,065 + +3.9 2,212,065 + +1.8 2,212,065 + +0.5 2,212,065 + +2.4 2,212,067 + -3.1 2,212,071 - -3.1 2,212,073 - -3.8 2,212,073 - -0.0 2,212,073 - +1.5 2,212,073 - +0.5 2,212,080 - -1.7 2,212,080 - -2.4 2,212,085 + +4.8
Or see this region's nucleotide sequence