Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01963

Experiment: octanoate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01962 and MPMX20_01963 are separated by 244 nucleotidesMPMX20_01963 and MPMX20_01964 are separated by 107 nucleotides MPMX20_01962: MPMX20_01962 - ABC transporter glutamine-binding protein GlnH, at 2,056,258 to 2,057,088 _01962 MPMX20_01963: MPMX20_01963 - hypothetical protein, at 2,057,333 to 2,057,500 _01963 MPMX20_01964: MPMX20_01964 - Adaptive-response sensory-kinase SasA, at 2,057,608 to 2,058,933 _01964 Position (kb) 2057 2058Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2056.379 kb on + strand, within MPMX20_01962at 2056.379 kb on + strand, within MPMX20_01962at 2056.379 kb on + strand, within MPMX20_01962at 2056.379 kb on + strand, within MPMX20_01962at 2056.387 kb on - strand, within MPMX20_01962at 2056.435 kb on - strand, within MPMX20_01962at 2056.505 kb on - strand, within MPMX20_01962at 2056.505 kb on - strand, within MPMX20_01962at 2056.507 kb on + strand, within MPMX20_01962at 2056.507 kb on + strand, within MPMX20_01962at 2056.514 kb on + strand, within MPMX20_01962at 2056.515 kb on - strand, within MPMX20_01962at 2056.515 kb on - strand, within MPMX20_01962at 2056.520 kb on + strand, within MPMX20_01962at 2056.616 kb on - strand, within MPMX20_01962at 2056.662 kb on - strand, within MPMX20_01962at 2056.662 kb on - strand, within MPMX20_01962at 2056.770 kb on - strand, within MPMX20_01962at 2056.902 kb on + strand, within MPMX20_01962at 2057.008 kb on - strandat 2057.069 kb on + strandat 2057.114 kb on + strandat 2057.114 kb on + strandat 2057.114 kb on + strandat 2057.122 kb on - strandat 2057.140 kb on - strandat 2057.203 kb on + strandat 2057.250 kb on + strandat 2057.284 kb on + strandat 2057.284 kb on + strandat 2057.284 kb on + strandat 2057.284 kb on + strandat 2057.284 kb on + strandat 2057.284 kb on + strandat 2057.284 kb on + strandat 2057.292 kb on + strandat 2057.292 kb on - strandat 2057.292 kb on - strandat 2057.292 kb on - strandat 2057.292 kb on - strandat 2057.292 kb on - strandat 2057.292 kb on - strandat 2057.294 kb on + strandat 2057.294 kb on + strandat 2057.302 kb on - strandat 2057.302 kb on - strandat 2057.302 kb on - strandat 2057.302 kb on - strandat 2057.350 kb on + strand, within MPMX20_01963at 2057.387 kb on + strand, within MPMX20_01963at 2057.415 kb on + strand, within MPMX20_01963at 2057.437 kb on + strand, within MPMX20_01963at 2057.445 kb on + strand, within MPMX20_01963at 2057.452 kb on - strand, within MPMX20_01963at 2057.499 kb on + strandat 2057.499 kb on + strandat 2057.502 kb on - strandat 2057.502 kb on - strandat 2057.535 kb on - strandat 2057.535 kb on - strandat 2057.535 kb on - strandat 2057.574 kb on - strandat 2057.589 kb on + strandat 2057.589 kb on + strandat 2057.597 kb on - strandat 2057.633 kb on + strandat 2057.635 kb on + strandat 2057.643 kb on - strandat 2057.643 kb on - strandat 2057.702 kb on + strandat 2057.738 kb on + strandat 2057.738 kb on + strandat 2057.746 kb on - strand, within MPMX20_01964at 2057.746 kb on - strand, within MPMX20_01964at 2057.746 kb on - strand, within MPMX20_01964at 2057.746 kb on - strand, within MPMX20_01964at 2057.746 kb on - strand, within MPMX20_01964at 2057.758 kb on - strand, within MPMX20_01964at 2057.807 kb on + strand, within MPMX20_01964at 2057.916 kb on + strand, within MPMX20_01964at 2057.916 kb on + strand, within MPMX20_01964at 2057.924 kb on - strand, within MPMX20_01964at 2057.974 kb on + strand, within MPMX20_01964at 2057.977 kb on - strand, within MPMX20_01964at 2058.103 kb on + strand, within MPMX20_01964at 2058.131 kb on + strand, within MPMX20_01964at 2058.173 kb on - strand, within MPMX20_01964at 2058.189 kb on + strand, within MPMX20_01964at 2058.223 kb on - strand, within MPMX20_01964at 2058.234 kb on + strand, within MPMX20_01964at 2058.253 kb on - strand, within MPMX20_01964at 2058.260 kb on + strand, within MPMX20_01964at 2058.260 kb on - strand, within MPMX20_01964at 2058.268 kb on - strand, within MPMX20_01964at 2058.407 kb on - strand, within MPMX20_01964at 2058.432 kb on - strand, within MPMX20_01964

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
remove
2,056,379 + MPMX20_01962 0.15 -2.5
2,056,379 + MPMX20_01962 0.15 +3.0
2,056,379 + MPMX20_01962 0.15 +1.0
2,056,379 + MPMX20_01962 0.15 -4.0
2,056,387 - MPMX20_01962 0.16 -0.5
2,056,435 - MPMX20_01962 0.21 +0.6
2,056,505 - MPMX20_01962 0.30 +0.7
2,056,505 - MPMX20_01962 0.30 +2.2
2,056,507 + MPMX20_01962 0.30 +1.4
2,056,507 + MPMX20_01962 0.30 -0.6
2,056,514 + MPMX20_01962 0.31 -3.3
2,056,515 - MPMX20_01962 0.31 -1.9
2,056,515 - MPMX20_01962 0.31 -0.8
2,056,520 + MPMX20_01962 0.32 +0.7
2,056,616 - MPMX20_01962 0.43 -2.3
2,056,662 - MPMX20_01962 0.49 -2.2
2,056,662 - MPMX20_01962 0.49 +1.0
2,056,770 - MPMX20_01962 0.62 -2.0
2,056,902 + MPMX20_01962 0.77 -3.4
2,057,008 - +1.3
2,057,069 + -2.4
2,057,114 + -2.9
2,057,114 + -0.1
2,057,114 + +2.9
2,057,122 - +0.6
2,057,140 - -1.1
2,057,203 + +0.7
2,057,250 + +1.4
2,057,284 + -0.6
2,057,284 + +1.3
2,057,284 + +2.7
2,057,284 + +1.8
2,057,284 + +0.6
2,057,284 + +1.0
2,057,284 + -3.4
2,057,292 + -0.1
2,057,292 - -1.4
2,057,292 - -1.0
2,057,292 - -2.0
2,057,292 - -1.5
2,057,292 - -3.5
2,057,292 - -1.8
2,057,294 + -3.6
2,057,294 + +1.6
2,057,302 - +1.6
2,057,302 - -0.8
2,057,302 - -2.5
2,057,302 - +0.8
2,057,350 + MPMX20_01963 0.10 -1.1
2,057,387 + MPMX20_01963 0.32 -1.7
2,057,415 + MPMX20_01963 0.49 -1.7
2,057,437 + MPMX20_01963 0.62 +2.2
2,057,445 + MPMX20_01963 0.67 -0.1
2,057,452 - MPMX20_01963 0.71 -0.5
2,057,499 + +4.2
2,057,499 + -2.6
2,057,502 - -1.7
2,057,502 - -2.0
2,057,535 - -0.1
2,057,535 - +0.0
2,057,535 - -1.1
2,057,574 - -0.1
2,057,589 + -2.0
2,057,589 + -2.0
2,057,597 - -2.2
2,057,633 + +1.8
2,057,635 + -0.2
2,057,643 - -2.1
2,057,643 - -1.0
2,057,702 + -2.3
2,057,738 + -2.9
2,057,738 + +1.9
2,057,746 - MPMX20_01964 0.10 +2.1
2,057,746 - MPMX20_01964 0.10 -0.1
2,057,746 - MPMX20_01964 0.10 +1.2
2,057,746 - MPMX20_01964 0.10 +1.4
2,057,746 - MPMX20_01964 0.10 -2.4
2,057,758 - MPMX20_01964 0.11 +2.2
2,057,807 + MPMX20_01964 0.15 +0.9
2,057,916 + MPMX20_01964 0.23 -1.6
2,057,916 + MPMX20_01964 0.23 +1.7
2,057,924 - MPMX20_01964 0.24 -2.6
2,057,974 + MPMX20_01964 0.28 -2.3
2,057,977 - MPMX20_01964 0.28 +0.7
2,058,103 + MPMX20_01964 0.37 -2.5
2,058,131 + MPMX20_01964 0.39 -0.8
2,058,173 - MPMX20_01964 0.43 +2.7
2,058,189 + MPMX20_01964 0.44 +0.2
2,058,223 - MPMX20_01964 0.46 +1.2
2,058,234 + MPMX20_01964 0.47 -3.3
2,058,253 - MPMX20_01964 0.49 +0.9
2,058,260 + MPMX20_01964 0.49 +1.5
2,058,260 - MPMX20_01964 0.49 -1.3
2,058,268 - MPMX20_01964 0.50 -2.1
2,058,407 - MPMX20_01964 0.60 +0.4
2,058,432 - MPMX20_01964 0.62 -2.4

Or see this region's nucleotide sequence