Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01962 and MPMX20_01963 are separated by 244 nucleotides MPMX20_01963 and MPMX20_01964 are separated by 107 nucleotides
MPMX20_01962: MPMX20_01962 - ABC transporter glutamine-binding protein GlnH, at 2,056,258 to 2,057,088
_01962
MPMX20_01963: MPMX20_01963 - hypothetical protein, at 2,057,333 to 2,057,500
_01963
MPMX20_01964: MPMX20_01964 - Adaptive-response sensory-kinase SasA, at 2,057,608 to 2,058,933
_01964
Position (kb)
2057
2058 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2056.379 kb on + strand, within MPMX20_01962 at 2056.379 kb on + strand, within MPMX20_01962 at 2056.379 kb on + strand, within MPMX20_01962 at 2056.379 kb on + strand, within MPMX20_01962 at 2056.387 kb on - strand, within MPMX20_01962 at 2056.435 kb on - strand, within MPMX20_01962 at 2056.505 kb on - strand, within MPMX20_01962 at 2056.505 kb on - strand, within MPMX20_01962 at 2056.507 kb on + strand, within MPMX20_01962 at 2056.507 kb on + strand, within MPMX20_01962 at 2056.514 kb on + strand, within MPMX20_01962 at 2056.515 kb on - strand, within MPMX20_01962 at 2056.515 kb on - strand, within MPMX20_01962 at 2056.520 kb on + strand, within MPMX20_01962 at 2056.616 kb on - strand, within MPMX20_01962 at 2056.662 kb on - strand, within MPMX20_01962 at 2056.662 kb on - strand, within MPMX20_01962 at 2056.770 kb on - strand, within MPMX20_01962 at 2056.902 kb on + strand, within MPMX20_01962 at 2057.008 kb on - strand at 2057.069 kb on + strand at 2057.114 kb on + strand at 2057.114 kb on + strand at 2057.114 kb on + strand at 2057.122 kb on - strand at 2057.140 kb on - strand at 2057.203 kb on + strand at 2057.250 kb on + strand at 2057.284 kb on + strand at 2057.284 kb on + strand at 2057.284 kb on + strand at 2057.284 kb on + strand at 2057.284 kb on + strand at 2057.284 kb on + strand at 2057.284 kb on + strand at 2057.292 kb on + strand at 2057.292 kb on - strand at 2057.292 kb on - strand at 2057.292 kb on - strand at 2057.292 kb on - strand at 2057.292 kb on - strand at 2057.292 kb on - strand at 2057.294 kb on + strand at 2057.294 kb on + strand at 2057.302 kb on - strand at 2057.302 kb on - strand at 2057.302 kb on - strand at 2057.302 kb on - strand at 2057.350 kb on + strand, within MPMX20_01963 at 2057.387 kb on + strand, within MPMX20_01963 at 2057.415 kb on + strand, within MPMX20_01963 at 2057.437 kb on + strand, within MPMX20_01963 at 2057.445 kb on + strand, within MPMX20_01963 at 2057.452 kb on - strand, within MPMX20_01963 at 2057.499 kb on + strand at 2057.499 kb on + strand at 2057.502 kb on - strand at 2057.502 kb on - strand at 2057.535 kb on - strand at 2057.535 kb on - strand at 2057.535 kb on - strand at 2057.574 kb on - strand at 2057.589 kb on + strand at 2057.589 kb on + strand at 2057.597 kb on - strand at 2057.633 kb on + strand at 2057.635 kb on + strand at 2057.643 kb on - strand at 2057.643 kb on - strand at 2057.702 kb on + strand at 2057.738 kb on + strand at 2057.738 kb on + strand at 2057.746 kb on - strand, within MPMX20_01964 at 2057.746 kb on - strand, within MPMX20_01964 at 2057.746 kb on - strand, within MPMX20_01964 at 2057.746 kb on - strand, within MPMX20_01964 at 2057.746 kb on - strand, within MPMX20_01964 at 2057.758 kb on - strand, within MPMX20_01964 at 2057.807 kb on + strand, within MPMX20_01964 at 2057.916 kb on + strand, within MPMX20_01964 at 2057.916 kb on + strand, within MPMX20_01964 at 2057.924 kb on - strand, within MPMX20_01964 at 2057.974 kb on + strand, within MPMX20_01964 at 2057.977 kb on - strand, within MPMX20_01964 at 2058.103 kb on + strand, within MPMX20_01964 at 2058.131 kb on + strand, within MPMX20_01964 at 2058.173 kb on - strand, within MPMX20_01964 at 2058.189 kb on + strand, within MPMX20_01964 at 2058.223 kb on - strand, within MPMX20_01964 at 2058.234 kb on + strand, within MPMX20_01964 at 2058.253 kb on - strand, within MPMX20_01964 at 2058.260 kb on + strand, within MPMX20_01964 at 2058.260 kb on - strand, within MPMX20_01964 at 2058.268 kb on - strand, within MPMX20_01964 at 2058.407 kb on - strand, within MPMX20_01964 at 2058.432 kb on - strand, within MPMX20_01964
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 2,056,379 + MPMX20_01962 0.15 -2.5 2,056,379 + MPMX20_01962 0.15 +3.0 2,056,379 + MPMX20_01962 0.15 +1.0 2,056,379 + MPMX20_01962 0.15 -4.0 2,056,387 - MPMX20_01962 0.16 -0.5 2,056,435 - MPMX20_01962 0.21 +0.6 2,056,505 - MPMX20_01962 0.30 +0.7 2,056,505 - MPMX20_01962 0.30 +2.2 2,056,507 + MPMX20_01962 0.30 +1.4 2,056,507 + MPMX20_01962 0.30 -0.6 2,056,514 + MPMX20_01962 0.31 -3.3 2,056,515 - MPMX20_01962 0.31 -1.9 2,056,515 - MPMX20_01962 0.31 -0.8 2,056,520 + MPMX20_01962 0.32 +0.7 2,056,616 - MPMX20_01962 0.43 -2.3 2,056,662 - MPMX20_01962 0.49 -2.2 2,056,662 - MPMX20_01962 0.49 +1.0 2,056,770 - MPMX20_01962 0.62 -2.0 2,056,902 + MPMX20_01962 0.77 -3.4 2,057,008 - +1.3 2,057,069 + -2.4 2,057,114 + -2.9 2,057,114 + -0.1 2,057,114 + +2.9 2,057,122 - +0.6 2,057,140 - -1.1 2,057,203 + +0.7 2,057,250 + +1.4 2,057,284 + -0.6 2,057,284 + +1.3 2,057,284 + +2.7 2,057,284 + +1.8 2,057,284 + +0.6 2,057,284 + +1.0 2,057,284 + -3.4 2,057,292 + -0.1 2,057,292 - -1.4 2,057,292 - -1.0 2,057,292 - -2.0 2,057,292 - -1.5 2,057,292 - -3.5 2,057,292 - -1.8 2,057,294 + -3.6 2,057,294 + +1.6 2,057,302 - +1.6 2,057,302 - -0.8 2,057,302 - -2.5 2,057,302 - +0.8 2,057,350 + MPMX20_01963 0.10 -1.1 2,057,387 + MPMX20_01963 0.32 -1.7 2,057,415 + MPMX20_01963 0.49 -1.7 2,057,437 + MPMX20_01963 0.62 +2.2 2,057,445 + MPMX20_01963 0.67 -0.1 2,057,452 - MPMX20_01963 0.71 -0.5 2,057,499 + +4.2 2,057,499 + -2.6 2,057,502 - -1.7 2,057,502 - -2.0 2,057,535 - -0.1 2,057,535 - +0.0 2,057,535 - -1.1 2,057,574 - -0.1 2,057,589 + -2.0 2,057,589 + -2.0 2,057,597 - -2.2 2,057,633 + +1.8 2,057,635 + -0.2 2,057,643 - -2.1 2,057,643 - -1.0 2,057,702 + -2.3 2,057,738 + -2.9 2,057,738 + +1.9 2,057,746 - MPMX20_01964 0.10 +2.1 2,057,746 - MPMX20_01964 0.10 -0.1 2,057,746 - MPMX20_01964 0.10 +1.2 2,057,746 - MPMX20_01964 0.10 +1.4 2,057,746 - MPMX20_01964 0.10 -2.4 2,057,758 - MPMX20_01964 0.11 +2.2 2,057,807 + MPMX20_01964 0.15 +0.9 2,057,916 + MPMX20_01964 0.23 -1.6 2,057,916 + MPMX20_01964 0.23 +1.7 2,057,924 - MPMX20_01964 0.24 -2.6 2,057,974 + MPMX20_01964 0.28 -2.3 2,057,977 - MPMX20_01964 0.28 +0.7 2,058,103 + MPMX20_01964 0.37 -2.5 2,058,131 + MPMX20_01964 0.39 -0.8 2,058,173 - MPMX20_01964 0.43 +2.7 2,058,189 + MPMX20_01964 0.44 +0.2 2,058,223 - MPMX20_01964 0.46 +1.2 2,058,234 + MPMX20_01964 0.47 -3.3 2,058,253 - MPMX20_01964 0.49 +0.9 2,058,260 + MPMX20_01964 0.49 +1.5 2,058,260 - MPMX20_01964 0.49 -1.3 2,058,268 - MPMX20_01964 0.50 -2.1 2,058,407 - MPMX20_01964 0.60 +0.4 2,058,432 - MPMX20_01964 0.62 -2.4
Or see this region's nucleotide sequence