Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01911 and MPMX20_01912 are separated by 2 nucleotides MPMX20_01912 and MPMX20_01913 are separated by 140 nucleotides MPMX20_01913 and MPMX20_01914 overlap by 34 nucleotides MPMX20_01914 and MPMX20_01915 overlap by 8 nucleotides
MPMX20_01911: MPMX20_01911 - putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B, at 2,002,654 to 2,003,310
_01911
MPMX20_01912: MPMX20_01912 - putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A, at 2,003,313 to 2,004,020
_01912
MPMX20_01913: MPMX20_01913 - HTH-type transcriptional regulator GltC, at 2,004,161 to 2,005,084
_01913
MPMX20_01914: MPMX20_01914 - Hemin import ATP-binding protein HmuV, at 2,005,051 to 2,005,830
_01914
MPMX20_01915: MPMX20_01915 - Hemin transport system permease protein HmuU, at 2,005,823 to 2,006,815
_01915
Position (kb)
2004
2005
2006 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2003.190 kb on + strand, within MPMX20_01911 at 2003.295 kb on + strand at 2003.303 kb on - strand at 2003.350 kb on - strand at 2003.383 kb on + strand at 2003.464 kb on - strand, within MPMX20_01912 at 2003.503 kb on + strand, within MPMX20_01912 at 2003.530 kb on - strand, within MPMX20_01912 at 2003.545 kb on + strand, within MPMX20_01912 at 2003.553 kb on - strand, within MPMX20_01912 at 2003.640 kb on + strand, within MPMX20_01912 at 2003.719 kb on - strand, within MPMX20_01912 at 2003.721 kb on + strand, within MPMX20_01912 at 2003.750 kb on - strand, within MPMX20_01912 at 2003.780 kb on + strand, within MPMX20_01912 at 2003.857 kb on + strand, within MPMX20_01912 at 2003.865 kb on - strand, within MPMX20_01912 at 2003.875 kb on - strand, within MPMX20_01912 at 2003.883 kb on - strand, within MPMX20_01912 at 2003.930 kb on + strand, within MPMX20_01912 at 2003.930 kb on + strand, within MPMX20_01912 at 2003.930 kb on + strand, within MPMX20_01912 at 2003.930 kb on + strand, within MPMX20_01912 at 2003.938 kb on - strand, within MPMX20_01912 at 2003.938 kb on - strand, within MPMX20_01912 at 2003.938 kb on - strand, within MPMX20_01912 at 2004.019 kb on - strand at 2004.031 kb on + strand at 2004.039 kb on - strand at 2004.039 kb on - strand at 2004.051 kb on + strand at 2004.059 kb on - strand at 2004.210 kb on - strand at 2004.271 kb on + strand, within MPMX20_01913 at 2004.313 kb on + strand, within MPMX20_01913 at 2004.338 kb on + strand, within MPMX20_01913 at 2004.396 kb on + strand, within MPMX20_01913 at 2004.413 kb on + strand, within MPMX20_01913 at 2004.428 kb on - strand, within MPMX20_01913 at 2004.571 kb on + strand, within MPMX20_01913 at 2004.751 kb on - strand, within MPMX20_01913 at 2004.754 kb on + strand, within MPMX20_01913 at 2004.754 kb on + strand, within MPMX20_01913 at 2004.790 kb on + strand, within MPMX20_01913 at 2004.798 kb on - strand, within MPMX20_01913 at 2004.855 kb on - strand, within MPMX20_01913 at 2005.018 kb on + strand at 2005.092 kb on - strand at 2005.100 kb on + strand at 2005.100 kb on + strand at 2005.108 kb on - strand at 2005.108 kb on - strand at 2005.108 kb on - strand at 2005.108 kb on - strand at 2005.108 kb on - strand at 2005.108 kb on - strand at 2005.141 kb on + strand, within MPMX20_01914 at 2005.216 kb on - strand, within MPMX20_01914 at 2005.325 kb on + strand, within MPMX20_01914 at 2005.370 kb on + strand, within MPMX20_01914 at 2005.378 kb on - strand, within MPMX20_01914 at 2005.510 kb on + strand, within MPMX20_01914 at 2005.525 kb on + strand, within MPMX20_01914 at 2005.533 kb on - strand, within MPMX20_01914 at 2005.665 kb on + strand, within MPMX20_01914 at 2005.676 kb on + strand, within MPMX20_01914 at 2005.748 kb on + strand, within MPMX20_01914 at 2005.776 kb on - strand at 2005.829 kb on - strand at 2005.834 kb on - strand at 2005.880 kb on - strand at 2005.962 kb on + strand, within MPMX20_01915 at 2005.972 kb on + strand, within MPMX20_01915 at 2006.079 kb on + strand, within MPMX20_01915
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 2,003,190 + MPMX20_01911 0.82 +1.6 2,003,295 + -1.6 2,003,303 - +1.6 2,003,350 - -1.5 2,003,383 + -0.1 2,003,464 - MPMX20_01912 0.21 -1.5 2,003,503 + MPMX20_01912 0.27 +1.4 2,003,530 - MPMX20_01912 0.31 -2.8 2,003,545 + MPMX20_01912 0.33 +2.0 2,003,553 - MPMX20_01912 0.34 +2.3 2,003,640 + MPMX20_01912 0.46 -1.9 2,003,719 - MPMX20_01912 0.57 +0.3 2,003,721 + MPMX20_01912 0.58 +1.6 2,003,750 - MPMX20_01912 0.62 +1.9 2,003,780 + MPMX20_01912 0.66 +2.9 2,003,857 + MPMX20_01912 0.77 -2.0 2,003,865 - MPMX20_01912 0.78 +2.2 2,003,875 - MPMX20_01912 0.79 +2.3 2,003,883 - MPMX20_01912 0.81 +1.4 2,003,930 + MPMX20_01912 0.87 -2.4 2,003,930 + MPMX20_01912 0.87 -1.4 2,003,930 + MPMX20_01912 0.87 +1.1 2,003,930 + MPMX20_01912 0.87 -3.2 2,003,938 - MPMX20_01912 0.88 -1.7 2,003,938 - MPMX20_01912 0.88 +0.8 2,003,938 - MPMX20_01912 0.88 -1.1 2,004,019 - -0.9 2,004,031 + -1.2 2,004,039 - +0.0 2,004,039 - +0.4 2,004,051 + +2.0 2,004,059 - -2.2 2,004,210 - -0.8 2,004,271 + MPMX20_01913 0.12 +1.9 2,004,313 + MPMX20_01913 0.16 +0.6 2,004,338 + MPMX20_01913 0.19 -1.8 2,004,396 + MPMX20_01913 0.25 +2.7 2,004,413 + MPMX20_01913 0.27 -0.4 2,004,428 - MPMX20_01913 0.29 -2.4 2,004,571 + MPMX20_01913 0.44 +1.9 2,004,751 - MPMX20_01913 0.64 -3.2 2,004,754 + MPMX20_01913 0.64 +0.7 2,004,754 + MPMX20_01913 0.64 +1.9 2,004,790 + MPMX20_01913 0.68 -0.1 2,004,798 - MPMX20_01913 0.69 +1.8 2,004,855 - MPMX20_01913 0.75 +2.0 2,005,018 + -2.7 2,005,092 - +1.4 2,005,100 + +2.3 2,005,100 + +0.1 2,005,108 - -0.6 2,005,108 - -1.1 2,005,108 - +3.3 2,005,108 - -1.2 2,005,108 - +1.7 2,005,108 - +0.8 2,005,141 + MPMX20_01914 0.12 +2.2 2,005,216 - MPMX20_01914 0.21 -1.8 2,005,325 + MPMX20_01914 0.35 +2.0 2,005,370 + MPMX20_01914 0.41 +3.3 2,005,378 - MPMX20_01914 0.42 -2.2 2,005,510 + MPMX20_01914 0.59 -2.2 2,005,525 + MPMX20_01914 0.61 -3.2 2,005,533 - MPMX20_01914 0.62 -0.4 2,005,665 + MPMX20_01914 0.79 -0.6 2,005,676 + MPMX20_01914 0.80 -3.3 2,005,748 + MPMX20_01914 0.89 -3.4 2,005,776 - -3.0 2,005,829 - -0.4 2,005,834 - -1.8 2,005,880 - -0.8 2,005,962 + MPMX20_01915 0.14 -0.8 2,005,972 + MPMX20_01915 0.15 -0.1 2,006,079 + MPMX20_01915 0.26 -1.1
Or see this region's nucleotide sequence