Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01913

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01911 and MPMX20_01912 are separated by 2 nucleotidesMPMX20_01912 and MPMX20_01913 are separated by 140 nucleotidesMPMX20_01913 and MPMX20_01914 overlap by 34 nucleotidesMPMX20_01914 and MPMX20_01915 overlap by 8 nucleotides MPMX20_01911: MPMX20_01911 - putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B, at 2,002,654 to 2,003,310 _01911 MPMX20_01912: MPMX20_01912 - putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A, at 2,003,313 to 2,004,020 _01912 MPMX20_01913: MPMX20_01913 - HTH-type transcriptional regulator GltC, at 2,004,161 to 2,005,084 _01913 MPMX20_01914: MPMX20_01914 - Hemin import ATP-binding protein HmuV, at 2,005,051 to 2,005,830 _01914 MPMX20_01915: MPMX20_01915 - Hemin transport system permease protein HmuU, at 2,005,823 to 2,006,815 _01915 Position (kb) 2004 2005 2006Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2003.190 kb on + strand, within MPMX20_01911at 2003.295 kb on + strandat 2003.303 kb on - strandat 2003.350 kb on - strandat 2003.383 kb on + strandat 2003.464 kb on - strand, within MPMX20_01912at 2003.503 kb on + strand, within MPMX20_01912at 2003.530 kb on - strand, within MPMX20_01912at 2003.545 kb on + strand, within MPMX20_01912at 2003.553 kb on - strand, within MPMX20_01912at 2003.640 kb on + strand, within MPMX20_01912at 2003.719 kb on - strand, within MPMX20_01912at 2003.721 kb on + strand, within MPMX20_01912at 2003.750 kb on - strand, within MPMX20_01912at 2003.780 kb on + strand, within MPMX20_01912at 2003.857 kb on + strand, within MPMX20_01912at 2003.865 kb on - strand, within MPMX20_01912at 2003.875 kb on - strand, within MPMX20_01912at 2003.883 kb on - strand, within MPMX20_01912at 2003.930 kb on + strand, within MPMX20_01912at 2003.930 kb on + strand, within MPMX20_01912at 2003.930 kb on + strand, within MPMX20_01912at 2003.930 kb on + strand, within MPMX20_01912at 2003.938 kb on - strand, within MPMX20_01912at 2003.938 kb on - strand, within MPMX20_01912at 2003.938 kb on - strand, within MPMX20_01912at 2004.019 kb on - strandat 2004.031 kb on + strandat 2004.039 kb on - strandat 2004.039 kb on - strandat 2004.051 kb on + strandat 2004.059 kb on - strandat 2004.210 kb on - strandat 2004.271 kb on + strand, within MPMX20_01913at 2004.313 kb on + strand, within MPMX20_01913at 2004.338 kb on + strand, within MPMX20_01913at 2004.396 kb on + strand, within MPMX20_01913at 2004.413 kb on + strand, within MPMX20_01913at 2004.428 kb on - strand, within MPMX20_01913at 2004.571 kb on + strand, within MPMX20_01913at 2004.751 kb on - strand, within MPMX20_01913at 2004.754 kb on + strand, within MPMX20_01913at 2004.754 kb on + strand, within MPMX20_01913at 2004.790 kb on + strand, within MPMX20_01913at 2004.798 kb on - strand, within MPMX20_01913at 2004.855 kb on - strand, within MPMX20_01913at 2005.018 kb on + strandat 2005.092 kb on - strandat 2005.100 kb on + strandat 2005.100 kb on + strandat 2005.108 kb on - strandat 2005.108 kb on - strandat 2005.108 kb on - strandat 2005.108 kb on - strandat 2005.108 kb on - strandat 2005.108 kb on - strandat 2005.141 kb on + strand, within MPMX20_01914at 2005.216 kb on - strand, within MPMX20_01914at 2005.325 kb on + strand, within MPMX20_01914at 2005.370 kb on + strand, within MPMX20_01914at 2005.378 kb on - strand, within MPMX20_01914at 2005.510 kb on + strand, within MPMX20_01914at 2005.525 kb on + strand, within MPMX20_01914at 2005.533 kb on - strand, within MPMX20_01914at 2005.665 kb on + strand, within MPMX20_01914at 2005.676 kb on + strand, within MPMX20_01914at 2005.748 kb on + strand, within MPMX20_01914at 2005.776 kb on - strandat 2005.829 kb on - strandat 2005.834 kb on - strandat 2005.880 kb on - strandat 2005.962 kb on + strand, within MPMX20_01915at 2005.972 kb on + strand, within MPMX20_01915at 2006.079 kb on + strand, within MPMX20_01915

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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2,003,190 + MPMX20_01911 0.82 +1.6
2,003,295 + -1.6
2,003,303 - +1.6
2,003,350 - -1.5
2,003,383 + -0.1
2,003,464 - MPMX20_01912 0.21 -1.5
2,003,503 + MPMX20_01912 0.27 +1.4
2,003,530 - MPMX20_01912 0.31 -2.8
2,003,545 + MPMX20_01912 0.33 +2.0
2,003,553 - MPMX20_01912 0.34 +2.3
2,003,640 + MPMX20_01912 0.46 -1.9
2,003,719 - MPMX20_01912 0.57 +0.3
2,003,721 + MPMX20_01912 0.58 +1.6
2,003,750 - MPMX20_01912 0.62 +1.9
2,003,780 + MPMX20_01912 0.66 +2.9
2,003,857 + MPMX20_01912 0.77 -2.0
2,003,865 - MPMX20_01912 0.78 +2.2
2,003,875 - MPMX20_01912 0.79 +2.3
2,003,883 - MPMX20_01912 0.81 +1.4
2,003,930 + MPMX20_01912 0.87 -2.4
2,003,930 + MPMX20_01912 0.87 -1.4
2,003,930 + MPMX20_01912 0.87 +1.1
2,003,930 + MPMX20_01912 0.87 -3.2
2,003,938 - MPMX20_01912 0.88 -1.7
2,003,938 - MPMX20_01912 0.88 +0.8
2,003,938 - MPMX20_01912 0.88 -1.1
2,004,019 - -0.9
2,004,031 + -1.2
2,004,039 - +0.0
2,004,039 - +0.4
2,004,051 + +2.0
2,004,059 - -2.2
2,004,210 - -0.8
2,004,271 + MPMX20_01913 0.12 +1.9
2,004,313 + MPMX20_01913 0.16 +0.6
2,004,338 + MPMX20_01913 0.19 -1.8
2,004,396 + MPMX20_01913 0.25 +2.7
2,004,413 + MPMX20_01913 0.27 -0.4
2,004,428 - MPMX20_01913 0.29 -2.4
2,004,571 + MPMX20_01913 0.44 +1.9
2,004,751 - MPMX20_01913 0.64 -3.2
2,004,754 + MPMX20_01913 0.64 +0.7
2,004,754 + MPMX20_01913 0.64 +1.9
2,004,790 + MPMX20_01913 0.68 -0.1
2,004,798 - MPMX20_01913 0.69 +1.8
2,004,855 - MPMX20_01913 0.75 +2.0
2,005,018 + -2.7
2,005,092 - +1.4
2,005,100 + +2.3
2,005,100 + +0.1
2,005,108 - -0.6
2,005,108 - -1.1
2,005,108 - +3.3
2,005,108 - -1.2
2,005,108 - +1.7
2,005,108 - +0.8
2,005,141 + MPMX20_01914 0.12 +2.2
2,005,216 - MPMX20_01914 0.21 -1.8
2,005,325 + MPMX20_01914 0.35 +2.0
2,005,370 + MPMX20_01914 0.41 +3.3
2,005,378 - MPMX20_01914 0.42 -2.2
2,005,510 + MPMX20_01914 0.59 -2.2
2,005,525 + MPMX20_01914 0.61 -3.2
2,005,533 - MPMX20_01914 0.62 -0.4
2,005,665 + MPMX20_01914 0.79 -0.6
2,005,676 + MPMX20_01914 0.80 -3.3
2,005,748 + MPMX20_01914 0.89 -3.4
2,005,776 - -3.0
2,005,829 - -0.4
2,005,834 - -1.8
2,005,880 - -0.8
2,005,962 + MPMX20_01915 0.14 -0.8
2,005,972 + MPMX20_01915 0.15 -0.1
2,006,079 + MPMX20_01915 0.26 -1.1

Or see this region's nucleotide sequence