Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01860

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01859 and MPMX20_01860 are separated by 73 nucleotidesMPMX20_01860 and MPMX20_01861 overlap by 1 nucleotides MPMX20_01859: MPMX20_01859 - Thiosulfate sulfurtransferase YnjE, at 1,952,312 to 1,953,619 _01859 MPMX20_01860: MPMX20_01860 - Thiamine import ATP-binding protein ThiQ, at 1,953,693 to 1,954,313 _01860 MPMX20_01861: MPMX20_01861 - Inner membrane ABC transporter permease protein YnjC, at 1,954,313 to 1,955,842 _01861 Position (kb) 1953 1954 1955Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1952.747 kb on - strand, within MPMX20_01859at 1952.760 kb on + strand, within MPMX20_01859at 1952.923 kb on + strand, within MPMX20_01859at 1952.931 kb on - strand, within MPMX20_01859at 1953.120 kb on - strand, within MPMX20_01859at 1953.144 kb on + strand, within MPMX20_01859at 1953.144 kb on + strand, within MPMX20_01859at 1953.144 kb on + strand, within MPMX20_01859at 1953.152 kb on - strand, within MPMX20_01859at 1953.152 kb on - strand, within MPMX20_01859at 1953.190 kb on + strand, within MPMX20_01859at 1953.337 kb on + strand, within MPMX20_01859at 1953.337 kb on + strand, within MPMX20_01859at 1953.360 kb on - strand, within MPMX20_01859at 1953.417 kb on - strand, within MPMX20_01859at 1953.516 kb on + strandat 1953.534 kb on - strandat 1953.558 kb on + strandat 1953.576 kb on - strandat 1953.737 kb on + strandat 1953.751 kb on + strandat 1953.813 kb on - strand, within MPMX20_01860at 1953.873 kb on - strand, within MPMX20_01860at 1954.021 kb on + strand, within MPMX20_01860at 1954.021 kb on + strand, within MPMX20_01860at 1954.075 kb on - strand, within MPMX20_01860at 1954.123 kb on - strand, within MPMX20_01860at 1954.222 kb on + strand, within MPMX20_01860at 1954.227 kb on + strand, within MPMX20_01860at 1954.413 kb on + strandat 1954.415 kb on - strandat 1954.432 kb on + strandat 1954.460 kb on + strandat 1954.497 kb on - strand, within MPMX20_01861at 1954.639 kb on + strand, within MPMX20_01861at 1954.675 kb on - strand, within MPMX20_01861at 1954.711 kb on + strand, within MPMX20_01861at 1954.739 kb on - strand, within MPMX20_01861at 1954.762 kb on + strand, within MPMX20_01861at 1954.849 kb on + strand, within MPMX20_01861at 1954.857 kb on - strand, within MPMX20_01861at 1954.882 kb on + strand, within MPMX20_01861at 1954.882 kb on + strand, within MPMX20_01861at 1954.882 kb on + strand, within MPMX20_01861at 1954.882 kb on + strand, within MPMX20_01861at 1954.882 kb on + strand, within MPMX20_01861at 1954.890 kb on - strand, within MPMX20_01861at 1954.890 kb on - strand, within MPMX20_01861at 1954.890 kb on - strand, within MPMX20_01861at 1954.898 kb on + strand, within MPMX20_01861at 1954.940 kb on - strand, within MPMX20_01861at 1954.950 kb on + strand, within MPMX20_01861at 1954.960 kb on - strand, within MPMX20_01861at 1955.038 kb on - strand, within MPMX20_01861at 1955.051 kb on + strand, within MPMX20_01861at 1955.070 kb on + strand, within MPMX20_01861at 1955.070 kb on + strand, within MPMX20_01861at 1955.078 kb on - strand, within MPMX20_01861at 1955.078 kb on - strand, within MPMX20_01861at 1955.166 kb on - strand, within MPMX20_01861at 1955.188 kb on + strand, within MPMX20_01861at 1955.215 kb on - strand, within MPMX20_01861at 1955.241 kb on + strand, within MPMX20_01861at 1955.241 kb on + strand, within MPMX20_01861at 1955.254 kb on - strand, within MPMX20_01861at 1955.301 kb on + strand, within MPMX20_01861

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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1,952,747 - MPMX20_01859 0.33 -0.6
1,952,760 + MPMX20_01859 0.34 +0.7
1,952,923 + MPMX20_01859 0.47 +2.4
1,952,931 - MPMX20_01859 0.47 +0.3
1,953,120 - MPMX20_01859 0.62 -3.0
1,953,144 + MPMX20_01859 0.64 -0.9
1,953,144 + MPMX20_01859 0.64 +1.2
1,953,144 + MPMX20_01859 0.64 -0.9
1,953,152 - MPMX20_01859 0.64 +0.9
1,953,152 - MPMX20_01859 0.64 +0.2
1,953,190 + MPMX20_01859 0.67 +0.8
1,953,337 + MPMX20_01859 0.78 +1.3
1,953,337 + MPMX20_01859 0.78 +0.2
1,953,360 - MPMX20_01859 0.80 -3.0
1,953,417 - MPMX20_01859 0.84 +1.0
1,953,516 + -2.7
1,953,534 - -1.6
1,953,558 + -0.3
1,953,576 - +2.1
1,953,737 + +1.2
1,953,751 + -1.1
1,953,813 - MPMX20_01860 0.19 -3.5
1,953,873 - MPMX20_01860 0.29 +2.7
1,954,021 + MPMX20_01860 0.53 +0.2
1,954,021 + MPMX20_01860 0.53 -2.5
1,954,075 - MPMX20_01860 0.62 -2.7
1,954,123 - MPMX20_01860 0.69 +2.8
1,954,222 + MPMX20_01860 0.85 +2.2
1,954,227 + MPMX20_01860 0.86 -0.1
1,954,413 + -0.3
1,954,415 - -1.1
1,954,432 + +1.2
1,954,460 + +1.5
1,954,497 - MPMX20_01861 0.12 +1.7
1,954,639 + MPMX20_01861 0.21 +1.9
1,954,675 - MPMX20_01861 0.24 -3.2
1,954,711 + MPMX20_01861 0.26 -2.8
1,954,739 - MPMX20_01861 0.28 +1.2
1,954,762 + MPMX20_01861 0.29 -0.6
1,954,849 + MPMX20_01861 0.35 +0.5
1,954,857 - MPMX20_01861 0.36 +1.2
1,954,882 + MPMX20_01861 0.37 +0.8
1,954,882 + MPMX20_01861 0.37 +3.2
1,954,882 + MPMX20_01861 0.37 +3.2
1,954,882 + MPMX20_01861 0.37 -3.6
1,954,882 + MPMX20_01861 0.37 +0.7
1,954,890 - MPMX20_01861 0.38 -2.5
1,954,890 - MPMX20_01861 0.38 +1.5
1,954,890 - MPMX20_01861 0.38 +3.5
1,954,898 + MPMX20_01861 0.38 +0.2
1,954,940 - MPMX20_01861 0.41 +3.0
1,954,950 + MPMX20_01861 0.42 -3.3
1,954,960 - MPMX20_01861 0.42 +1.1
1,955,038 - MPMX20_01861 0.47 -3.3
1,955,051 + MPMX20_01861 0.48 -1.5
1,955,070 + MPMX20_01861 0.49 -2.3
1,955,070 + MPMX20_01861 0.49 -3.6
1,955,078 - MPMX20_01861 0.50 -1.1
1,955,078 - MPMX20_01861 0.50 -0.8
1,955,166 - MPMX20_01861 0.56 -2.7
1,955,188 + MPMX20_01861 0.57 +0.3
1,955,215 - MPMX20_01861 0.59 -3.4
1,955,241 + MPMX20_01861 0.61 -1.1
1,955,241 + MPMX20_01861 0.61 -1.2
1,955,254 - MPMX20_01861 0.62 -2.3
1,955,301 + MPMX20_01861 0.65 -1.7

Or see this region's nucleotide sequence