Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01859 and MPMX20_01860 are separated by 73 nucleotides MPMX20_01860 and MPMX20_01861 overlap by 1 nucleotides
MPMX20_01859: MPMX20_01859 - Thiosulfate sulfurtransferase YnjE, at 1,952,312 to 1,953,619
_01859
MPMX20_01860: MPMX20_01860 - Thiamine import ATP-binding protein ThiQ, at 1,953,693 to 1,954,313
_01860
MPMX20_01861: MPMX20_01861 - Inner membrane ABC transporter permease protein YnjC, at 1,954,313 to 1,955,842
_01861
Position (kb)
1953
1954
1955 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1952.747 kb on - strand, within MPMX20_01859 at 1952.760 kb on + strand, within MPMX20_01859 at 1952.923 kb on + strand, within MPMX20_01859 at 1952.931 kb on - strand, within MPMX20_01859 at 1953.120 kb on - strand, within MPMX20_01859 at 1953.144 kb on + strand, within MPMX20_01859 at 1953.144 kb on + strand, within MPMX20_01859 at 1953.144 kb on + strand, within MPMX20_01859 at 1953.152 kb on - strand, within MPMX20_01859 at 1953.152 kb on - strand, within MPMX20_01859 at 1953.190 kb on + strand, within MPMX20_01859 at 1953.337 kb on + strand, within MPMX20_01859 at 1953.337 kb on + strand, within MPMX20_01859 at 1953.360 kb on - strand, within MPMX20_01859 at 1953.417 kb on - strand, within MPMX20_01859 at 1953.516 kb on + strand at 1953.534 kb on - strand at 1953.558 kb on + strand at 1953.576 kb on - strand at 1953.737 kb on + strand at 1953.751 kb on + strand at 1953.813 kb on - strand, within MPMX20_01860 at 1953.873 kb on - strand, within MPMX20_01860 at 1954.021 kb on + strand, within MPMX20_01860 at 1954.021 kb on + strand, within MPMX20_01860 at 1954.075 kb on - strand, within MPMX20_01860 at 1954.123 kb on - strand, within MPMX20_01860 at 1954.222 kb on + strand, within MPMX20_01860 at 1954.227 kb on + strand, within MPMX20_01860 at 1954.413 kb on + strand at 1954.415 kb on - strand at 1954.432 kb on + strand at 1954.460 kb on + strand at 1954.497 kb on - strand, within MPMX20_01861 at 1954.639 kb on + strand, within MPMX20_01861 at 1954.675 kb on - strand, within MPMX20_01861 at 1954.711 kb on + strand, within MPMX20_01861 at 1954.739 kb on - strand, within MPMX20_01861 at 1954.762 kb on + strand, within MPMX20_01861 at 1954.849 kb on + strand, within MPMX20_01861 at 1954.857 kb on - strand, within MPMX20_01861 at 1954.882 kb on + strand, within MPMX20_01861 at 1954.882 kb on + strand, within MPMX20_01861 at 1954.882 kb on + strand, within MPMX20_01861 at 1954.882 kb on + strand, within MPMX20_01861 at 1954.882 kb on + strand, within MPMX20_01861 at 1954.890 kb on - strand, within MPMX20_01861 at 1954.890 kb on - strand, within MPMX20_01861 at 1954.890 kb on - strand, within MPMX20_01861 at 1954.898 kb on + strand, within MPMX20_01861 at 1954.940 kb on - strand, within MPMX20_01861 at 1954.950 kb on + strand, within MPMX20_01861 at 1954.960 kb on - strand, within MPMX20_01861 at 1955.038 kb on - strand, within MPMX20_01861 at 1955.051 kb on + strand, within MPMX20_01861 at 1955.070 kb on + strand, within MPMX20_01861 at 1955.070 kb on + strand, within MPMX20_01861 at 1955.078 kb on - strand, within MPMX20_01861 at 1955.078 kb on - strand, within MPMX20_01861 at 1955.166 kb on - strand, within MPMX20_01861 at 1955.188 kb on + strand, within MPMX20_01861 at 1955.215 kb on - strand, within MPMX20_01861 at 1955.241 kb on + strand, within MPMX20_01861 at 1955.241 kb on + strand, within MPMX20_01861 at 1955.254 kb on - strand, within MPMX20_01861 at 1955.301 kb on + strand, within MPMX20_01861
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 1,952,747 - MPMX20_01859 0.33 -0.6 1,952,760 + MPMX20_01859 0.34 +0.7 1,952,923 + MPMX20_01859 0.47 +2.4 1,952,931 - MPMX20_01859 0.47 +0.3 1,953,120 - MPMX20_01859 0.62 -3.0 1,953,144 + MPMX20_01859 0.64 -0.9 1,953,144 + MPMX20_01859 0.64 +1.2 1,953,144 + MPMX20_01859 0.64 -0.9 1,953,152 - MPMX20_01859 0.64 +0.9 1,953,152 - MPMX20_01859 0.64 +0.2 1,953,190 + MPMX20_01859 0.67 +0.8 1,953,337 + MPMX20_01859 0.78 +1.3 1,953,337 + MPMX20_01859 0.78 +0.2 1,953,360 - MPMX20_01859 0.80 -3.0 1,953,417 - MPMX20_01859 0.84 +1.0 1,953,516 + -2.7 1,953,534 - -1.6 1,953,558 + -0.3 1,953,576 - +2.1 1,953,737 + +1.2 1,953,751 + -1.1 1,953,813 - MPMX20_01860 0.19 -3.5 1,953,873 - MPMX20_01860 0.29 +2.7 1,954,021 + MPMX20_01860 0.53 +0.2 1,954,021 + MPMX20_01860 0.53 -2.5 1,954,075 - MPMX20_01860 0.62 -2.7 1,954,123 - MPMX20_01860 0.69 +2.8 1,954,222 + MPMX20_01860 0.85 +2.2 1,954,227 + MPMX20_01860 0.86 -0.1 1,954,413 + -0.3 1,954,415 - -1.1 1,954,432 + +1.2 1,954,460 + +1.5 1,954,497 - MPMX20_01861 0.12 +1.7 1,954,639 + MPMX20_01861 0.21 +1.9 1,954,675 - MPMX20_01861 0.24 -3.2 1,954,711 + MPMX20_01861 0.26 -2.8 1,954,739 - MPMX20_01861 0.28 +1.2 1,954,762 + MPMX20_01861 0.29 -0.6 1,954,849 + MPMX20_01861 0.35 +0.5 1,954,857 - MPMX20_01861 0.36 +1.2 1,954,882 + MPMX20_01861 0.37 +0.8 1,954,882 + MPMX20_01861 0.37 +3.2 1,954,882 + MPMX20_01861 0.37 +3.2 1,954,882 + MPMX20_01861 0.37 -3.6 1,954,882 + MPMX20_01861 0.37 +0.7 1,954,890 - MPMX20_01861 0.38 -2.5 1,954,890 - MPMX20_01861 0.38 +1.5 1,954,890 - MPMX20_01861 0.38 +3.5 1,954,898 + MPMX20_01861 0.38 +0.2 1,954,940 - MPMX20_01861 0.41 +3.0 1,954,950 + MPMX20_01861 0.42 -3.3 1,954,960 - MPMX20_01861 0.42 +1.1 1,955,038 - MPMX20_01861 0.47 -3.3 1,955,051 + MPMX20_01861 0.48 -1.5 1,955,070 + MPMX20_01861 0.49 -2.3 1,955,070 + MPMX20_01861 0.49 -3.6 1,955,078 - MPMX20_01861 0.50 -1.1 1,955,078 - MPMX20_01861 0.50 -0.8 1,955,166 - MPMX20_01861 0.56 -2.7 1,955,188 + MPMX20_01861 0.57 +0.3 1,955,215 - MPMX20_01861 0.59 -3.4 1,955,241 + MPMX20_01861 0.61 -1.1 1,955,241 + MPMX20_01861 0.61 -1.2 1,955,254 - MPMX20_01861 0.62 -2.3 1,955,301 + MPMX20_01861 0.65 -1.7
Or see this region's nucleotide sequence