Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01858

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01856 and MPMX20_01857 are separated by 75 nucleotidesMPMX20_01857 and MPMX20_01858 overlap by 8 nucleotidesMPMX20_01858 and MPMX20_01859 overlap by 4 nucleotides MPMX20_01856: MPMX20_01856 - CTP pyrophosphohydrolase, at 1,950,644 to 1,951,060 _01856 MPMX20_01857: MPMX20_01857 - hypothetical protein, at 1,951,136 to 1,951,705 _01857 MPMX20_01858: MPMX20_01858 - Inner membrane protein YnjF, at 1,951,698 to 1,952,315 _01858 MPMX20_01859: MPMX20_01859 - Thiosulfate sulfurtransferase YnjE, at 1,952,312 to 1,953,619 _01859 Position (kb) 1951 1952 1953Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1950.712 kb on - strand, within MPMX20_01856at 1950.719 kb on + strand, within MPMX20_01856at 1950.749 kb on - strand, within MPMX20_01856at 1950.752 kb on + strand, within MPMX20_01856at 1950.754 kb on + strand, within MPMX20_01856at 1950.755 kb on - strand, within MPMX20_01856at 1950.755 kb on - strand, within MPMX20_01856at 1950.755 kb on - strand, within MPMX20_01856at 1950.755 kb on - strand, within MPMX20_01856at 1950.755 kb on - strand, within MPMX20_01856at 1950.762 kb on - strand, within MPMX20_01856at 1950.794 kb on - strand, within MPMX20_01856at 1950.794 kb on - strand, within MPMX20_01856at 1950.819 kb on - strand, within MPMX20_01856at 1950.844 kb on - strand, within MPMX20_01856at 1951.112 kb on - strandat 1951.150 kb on + strandat 1951.157 kb on - strandat 1951.159 kb on - strandat 1951.175 kb on + strandat 1951.175 kb on + strandat 1951.181 kb on - strandat 1951.181 kb on - strandat 1951.185 kb on + strandat 1951.185 kb on + strandat 1951.185 kb on + strandat 1951.193 kb on - strand, within MPMX20_01857at 1951.193 kb on - strand, within MPMX20_01857at 1951.193 kb on - strand, within MPMX20_01857at 1951.193 kb on - strand, within MPMX20_01857at 1951.193 kb on - strand, within MPMX20_01857at 1951.219 kb on + strand, within MPMX20_01857at 1951.231 kb on + strand, within MPMX20_01857at 1951.438 kb on + strand, within MPMX20_01857at 1951.438 kb on + strand, within MPMX20_01857at 1951.467 kb on - strand, within MPMX20_01857at 1951.496 kb on + strand, within MPMX20_01857at 1951.496 kb on + strand, within MPMX20_01857at 1951.501 kb on + strand, within MPMX20_01857at 1951.501 kb on + strand, within MPMX20_01857at 1951.501 kb on + strand, within MPMX20_01857at 1951.504 kb on - strand, within MPMX20_01857at 1951.507 kb on + strand, within MPMX20_01857at 1951.509 kb on - strand, within MPMX20_01857at 1951.509 kb on - strand, within MPMX20_01857at 1951.509 kb on - strand, within MPMX20_01857at 1951.526 kb on + strand, within MPMX20_01857at 1951.590 kb on - strand, within MPMX20_01857at 1951.636 kb on + strand, within MPMX20_01857at 1951.636 kb on + strand, within MPMX20_01857at 1951.636 kb on + strand, within MPMX20_01857at 1951.636 kb on + strand, within MPMX20_01857at 1951.636 kb on + strand, within MPMX20_01857at 1951.636 kb on + strand, within MPMX20_01857at 1951.644 kb on - strand, within MPMX20_01857at 1951.661 kb on + strandat 1951.724 kb on + strandat 1951.748 kb on + strandat 1951.748 kb on + strandat 1951.750 kb on + strandat 1951.794 kb on - strand, within MPMX20_01858at 1951.794 kb on - strand, within MPMX20_01858at 1951.996 kb on - strand, within MPMX20_01858at 1952.119 kb on - strand, within MPMX20_01858at 1952.146 kb on + strand, within MPMX20_01858at 1952.155 kb on + strand, within MPMX20_01858at 1952.176 kb on + strand, within MPMX20_01858at 1952.190 kb on + strand, within MPMX20_01858at 1952.258 kb on + strandat 1952.273 kb on + strandat 1952.292 kb on + strandat 1952.468 kb on + strand, within MPMX20_01859at 1952.488 kb on - strand, within MPMX20_01859at 1952.498 kb on + strand, within MPMX20_01859at 1952.540 kb on - strand, within MPMX20_01859at 1952.747 kb on - strand, within MPMX20_01859at 1952.760 kb on + strand, within MPMX20_01859at 1952.923 kb on + strand, within MPMX20_01859at 1952.931 kb on - strand, within MPMX20_01859at 1953.120 kb on - strand, within MPMX20_01859at 1953.144 kb on + strand, within MPMX20_01859at 1953.144 kb on + strand, within MPMX20_01859at 1953.144 kb on + strand, within MPMX20_01859at 1953.152 kb on - strand, within MPMX20_01859at 1953.152 kb on - strand, within MPMX20_01859at 1953.190 kb on + strand, within MPMX20_01859

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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1,950,712 - MPMX20_01856 0.16 +2.8
1,950,719 + MPMX20_01856 0.18 -1.4
1,950,749 - MPMX20_01856 0.25 +0.3
1,950,752 + MPMX20_01856 0.26 +2.1
1,950,754 + MPMX20_01856 0.26 -4.0
1,950,755 - MPMX20_01856 0.27 +2.0
1,950,755 - MPMX20_01856 0.27 -3.2
1,950,755 - MPMX20_01856 0.27 -3.1
1,950,755 - MPMX20_01856 0.27 -0.9
1,950,755 - MPMX20_01856 0.27 +1.3
1,950,762 - MPMX20_01856 0.28 +1.1
1,950,794 - MPMX20_01856 0.36 +0.3
1,950,794 - MPMX20_01856 0.36 -0.1
1,950,819 - MPMX20_01856 0.42 -1.9
1,950,844 - MPMX20_01856 0.48 -1.0
1,951,112 - +2.0
1,951,150 + -1.8
1,951,157 - -3.3
1,951,159 - +1.7
1,951,175 + +0.5
1,951,175 + +0.7
1,951,181 - -2.2
1,951,181 - -0.3
1,951,185 + +1.2
1,951,185 + -0.1
1,951,185 + -1.6
1,951,193 - MPMX20_01857 0.10 +0.2
1,951,193 - MPMX20_01857 0.10 +1.5
1,951,193 - MPMX20_01857 0.10 -0.6
1,951,193 - MPMX20_01857 0.10 -2.6
1,951,193 - MPMX20_01857 0.10 +2.3
1,951,219 + MPMX20_01857 0.15 -0.9
1,951,231 + MPMX20_01857 0.17 -3.2
1,951,438 + MPMX20_01857 0.53 +2.2
1,951,438 + MPMX20_01857 0.53 -2.1
1,951,467 - MPMX20_01857 0.58 -3.3
1,951,496 + MPMX20_01857 0.63 -2.3
1,951,496 + MPMX20_01857 0.63 -0.3
1,951,501 + MPMX20_01857 0.64 +4.4
1,951,501 + MPMX20_01857 0.64 -1.1
1,951,501 + MPMX20_01857 0.64 +0.7
1,951,504 - MPMX20_01857 0.65 -0.6
1,951,507 + MPMX20_01857 0.65 -3.0
1,951,509 - MPMX20_01857 0.65 +1.0
1,951,509 - MPMX20_01857 0.65 -3.6
1,951,509 - MPMX20_01857 0.65 -1.2
1,951,526 + MPMX20_01857 0.68 -0.1
1,951,590 - MPMX20_01857 0.80 -1.9
1,951,636 + MPMX20_01857 0.88 -2.3
1,951,636 + MPMX20_01857 0.88 +1.7
1,951,636 + MPMX20_01857 0.88 -0.1
1,951,636 + MPMX20_01857 0.88 +0.4
1,951,636 + MPMX20_01857 0.88 -2.8
1,951,636 + MPMX20_01857 0.88 -0.3
1,951,644 - MPMX20_01857 0.89 -1.9
1,951,661 + -1.9
1,951,724 + -2.8
1,951,748 + -3.8
1,951,748 + +0.4
1,951,750 + +1.5
1,951,794 - MPMX20_01858 0.16 -1.1
1,951,794 - MPMX20_01858 0.16 +1.7
1,951,996 - MPMX20_01858 0.48 -2.2
1,952,119 - MPMX20_01858 0.68 +1.7
1,952,146 + MPMX20_01858 0.72 +0.6
1,952,155 + MPMX20_01858 0.74 +0.3
1,952,176 + MPMX20_01858 0.77 +2.1
1,952,190 + MPMX20_01858 0.80 +3.8
1,952,258 + +0.3
1,952,273 + -0.1
1,952,292 + +0.7
1,952,468 + MPMX20_01859 0.12 +0.2
1,952,488 - MPMX20_01859 0.13 +0.6
1,952,498 + MPMX20_01859 0.14 -2.6
1,952,540 - MPMX20_01859 0.17 -4.0
1,952,747 - MPMX20_01859 0.33 -0.6
1,952,760 + MPMX20_01859 0.34 +0.7
1,952,923 + MPMX20_01859 0.47 +2.4
1,952,931 - MPMX20_01859 0.47 +0.3
1,953,120 - MPMX20_01859 0.62 -3.0
1,953,144 + MPMX20_01859 0.64 -0.9
1,953,144 + MPMX20_01859 0.64 +1.2
1,953,144 + MPMX20_01859 0.64 -0.9
1,953,152 - MPMX20_01859 0.64 +0.9
1,953,152 - MPMX20_01859 0.64 +0.2
1,953,190 + MPMX20_01859 0.67 +0.8

Or see this region's nucleotide sequence