Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01856 and MPMX20_01857 are separated by 75 nucleotides MPMX20_01857 and MPMX20_01858 overlap by 8 nucleotides MPMX20_01858 and MPMX20_01859 overlap by 4 nucleotides
MPMX20_01856: MPMX20_01856 - CTP pyrophosphohydrolase, at 1,950,644 to 1,951,060
_01856
MPMX20_01857: MPMX20_01857 - hypothetical protein, at 1,951,136 to 1,951,705
_01857
MPMX20_01858: MPMX20_01858 - Inner membrane protein YnjF, at 1,951,698 to 1,952,315
_01858
MPMX20_01859: MPMX20_01859 - Thiosulfate sulfurtransferase YnjE, at 1,952,312 to 1,953,619
_01859
Position (kb)
1951
1952
1953 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1950.712 kb on - strand, within MPMX20_01856 at 1950.719 kb on + strand, within MPMX20_01856 at 1950.749 kb on - strand, within MPMX20_01856 at 1950.752 kb on + strand, within MPMX20_01856 at 1950.754 kb on + strand, within MPMX20_01856 at 1950.755 kb on - strand, within MPMX20_01856 at 1950.755 kb on - strand, within MPMX20_01856 at 1950.755 kb on - strand, within MPMX20_01856 at 1950.755 kb on - strand, within MPMX20_01856 at 1950.755 kb on - strand, within MPMX20_01856 at 1950.762 kb on - strand, within MPMX20_01856 at 1950.794 kb on - strand, within MPMX20_01856 at 1950.794 kb on - strand, within MPMX20_01856 at 1950.819 kb on - strand, within MPMX20_01856 at 1950.844 kb on - strand, within MPMX20_01856 at 1951.112 kb on - strand at 1951.150 kb on + strand at 1951.157 kb on - strand at 1951.159 kb on - strand at 1951.175 kb on + strand at 1951.175 kb on + strand at 1951.181 kb on - strand at 1951.181 kb on - strand at 1951.185 kb on + strand at 1951.185 kb on + strand at 1951.185 kb on + strand at 1951.193 kb on - strand, within MPMX20_01857 at 1951.193 kb on - strand, within MPMX20_01857 at 1951.193 kb on - strand, within MPMX20_01857 at 1951.193 kb on - strand, within MPMX20_01857 at 1951.193 kb on - strand, within MPMX20_01857 at 1951.219 kb on + strand, within MPMX20_01857 at 1951.231 kb on + strand, within MPMX20_01857 at 1951.438 kb on + strand, within MPMX20_01857 at 1951.438 kb on + strand, within MPMX20_01857 at 1951.467 kb on - strand, within MPMX20_01857 at 1951.496 kb on + strand, within MPMX20_01857 at 1951.496 kb on + strand, within MPMX20_01857 at 1951.501 kb on + strand, within MPMX20_01857 at 1951.501 kb on + strand, within MPMX20_01857 at 1951.501 kb on + strand, within MPMX20_01857 at 1951.504 kb on - strand, within MPMX20_01857 at 1951.507 kb on + strand, within MPMX20_01857 at 1951.509 kb on - strand, within MPMX20_01857 at 1951.509 kb on - strand, within MPMX20_01857 at 1951.509 kb on - strand, within MPMX20_01857 at 1951.526 kb on + strand, within MPMX20_01857 at 1951.590 kb on - strand, within MPMX20_01857 at 1951.636 kb on + strand, within MPMX20_01857 at 1951.636 kb on + strand, within MPMX20_01857 at 1951.636 kb on + strand, within MPMX20_01857 at 1951.636 kb on + strand, within MPMX20_01857 at 1951.636 kb on + strand, within MPMX20_01857 at 1951.636 kb on + strand, within MPMX20_01857 at 1951.644 kb on - strand, within MPMX20_01857 at 1951.661 kb on + strand at 1951.724 kb on + strand at 1951.748 kb on + strand at 1951.748 kb on + strand at 1951.750 kb on + strand at 1951.794 kb on - strand, within MPMX20_01858 at 1951.794 kb on - strand, within MPMX20_01858 at 1951.996 kb on - strand, within MPMX20_01858 at 1952.119 kb on - strand, within MPMX20_01858 at 1952.146 kb on + strand, within MPMX20_01858 at 1952.155 kb on + strand, within MPMX20_01858 at 1952.176 kb on + strand, within MPMX20_01858 at 1952.190 kb on + strand, within MPMX20_01858 at 1952.258 kb on + strand at 1952.273 kb on + strand at 1952.292 kb on + strand at 1952.468 kb on + strand, within MPMX20_01859 at 1952.488 kb on - strand, within MPMX20_01859 at 1952.498 kb on + strand, within MPMX20_01859 at 1952.540 kb on - strand, within MPMX20_01859 at 1952.747 kb on - strand, within MPMX20_01859 at 1952.760 kb on + strand, within MPMX20_01859 at 1952.923 kb on + strand, within MPMX20_01859 at 1952.931 kb on - strand, within MPMX20_01859 at 1953.120 kb on - strand, within MPMX20_01859 at 1953.144 kb on + strand, within MPMX20_01859 at 1953.144 kb on + strand, within MPMX20_01859 at 1953.144 kb on + strand, within MPMX20_01859 at 1953.152 kb on - strand, within MPMX20_01859 at 1953.152 kb on - strand, within MPMX20_01859 at 1953.190 kb on + strand, within MPMX20_01859
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 1,950,712 - MPMX20_01856 0.16 +2.8 1,950,719 + MPMX20_01856 0.18 -1.4 1,950,749 - MPMX20_01856 0.25 +0.3 1,950,752 + MPMX20_01856 0.26 +2.1 1,950,754 + MPMX20_01856 0.26 -4.0 1,950,755 - MPMX20_01856 0.27 +2.0 1,950,755 - MPMX20_01856 0.27 -3.2 1,950,755 - MPMX20_01856 0.27 -3.1 1,950,755 - MPMX20_01856 0.27 -0.9 1,950,755 - MPMX20_01856 0.27 +1.3 1,950,762 - MPMX20_01856 0.28 +1.1 1,950,794 - MPMX20_01856 0.36 +0.3 1,950,794 - MPMX20_01856 0.36 -0.1 1,950,819 - MPMX20_01856 0.42 -1.9 1,950,844 - MPMX20_01856 0.48 -1.0 1,951,112 - +2.0 1,951,150 + -1.8 1,951,157 - -3.3 1,951,159 - +1.7 1,951,175 + +0.5 1,951,175 + +0.7 1,951,181 - -2.2 1,951,181 - -0.3 1,951,185 + +1.2 1,951,185 + -0.1 1,951,185 + -1.6 1,951,193 - MPMX20_01857 0.10 +0.2 1,951,193 - MPMX20_01857 0.10 +1.5 1,951,193 - MPMX20_01857 0.10 -0.6 1,951,193 - MPMX20_01857 0.10 -2.6 1,951,193 - MPMX20_01857 0.10 +2.3 1,951,219 + MPMX20_01857 0.15 -0.9 1,951,231 + MPMX20_01857 0.17 -3.2 1,951,438 + MPMX20_01857 0.53 +2.2 1,951,438 + MPMX20_01857 0.53 -2.1 1,951,467 - MPMX20_01857 0.58 -3.3 1,951,496 + MPMX20_01857 0.63 -2.3 1,951,496 + MPMX20_01857 0.63 -0.3 1,951,501 + MPMX20_01857 0.64 +4.4 1,951,501 + MPMX20_01857 0.64 -1.1 1,951,501 + MPMX20_01857 0.64 +0.7 1,951,504 - MPMX20_01857 0.65 -0.6 1,951,507 + MPMX20_01857 0.65 -3.0 1,951,509 - MPMX20_01857 0.65 +1.0 1,951,509 - MPMX20_01857 0.65 -3.6 1,951,509 - MPMX20_01857 0.65 -1.2 1,951,526 + MPMX20_01857 0.68 -0.1 1,951,590 - MPMX20_01857 0.80 -1.9 1,951,636 + MPMX20_01857 0.88 -2.3 1,951,636 + MPMX20_01857 0.88 +1.7 1,951,636 + MPMX20_01857 0.88 -0.1 1,951,636 + MPMX20_01857 0.88 +0.4 1,951,636 + MPMX20_01857 0.88 -2.8 1,951,636 + MPMX20_01857 0.88 -0.3 1,951,644 - MPMX20_01857 0.89 -1.9 1,951,661 + -1.9 1,951,724 + -2.8 1,951,748 + -3.8 1,951,748 + +0.4 1,951,750 + +1.5 1,951,794 - MPMX20_01858 0.16 -1.1 1,951,794 - MPMX20_01858 0.16 +1.7 1,951,996 - MPMX20_01858 0.48 -2.2 1,952,119 - MPMX20_01858 0.68 +1.7 1,952,146 + MPMX20_01858 0.72 +0.6 1,952,155 + MPMX20_01858 0.74 +0.3 1,952,176 + MPMX20_01858 0.77 +2.1 1,952,190 + MPMX20_01858 0.80 +3.8 1,952,258 + +0.3 1,952,273 + -0.1 1,952,292 + +0.7 1,952,468 + MPMX20_01859 0.12 +0.2 1,952,488 - MPMX20_01859 0.13 +0.6 1,952,498 + MPMX20_01859 0.14 -2.6 1,952,540 - MPMX20_01859 0.17 -4.0 1,952,747 - MPMX20_01859 0.33 -0.6 1,952,760 + MPMX20_01859 0.34 +0.7 1,952,923 + MPMX20_01859 0.47 +2.4 1,952,931 - MPMX20_01859 0.47 +0.3 1,953,120 - MPMX20_01859 0.62 -3.0 1,953,144 + MPMX20_01859 0.64 -0.9 1,953,144 + MPMX20_01859 0.64 +1.2 1,953,144 + MPMX20_01859 0.64 -0.9 1,953,152 - MPMX20_01859 0.64 +0.9 1,953,152 - MPMX20_01859 0.64 +0.2 1,953,190 + MPMX20_01859 0.67 +0.8
Or see this region's nucleotide sequence