Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01817 and MPMX20_01818 overlap by 17 nucleotides MPMX20_01818 and MPMX20_01819 are separated by 9 nucleotides MPMX20_01819 and MPMX20_01820 are separated by 117 nucleotides
MPMX20_01817: MPMX20_01817 - tRNA-specific 2-thiouridylase MnmA, at 1,911,982 to 1,913,151
_01817
MPMX20_01818: MPMX20_01818 - Phosphatase NudJ, at 1,913,135 to 1,913,608
_01818
MPMX20_01819: MPMX20_01819 - Ribosomal large subunit pseudouridine synthase E, at 1,913,618 to 1,914,271
_01819
MPMX20_01820: MPMX20_01820 - Isocitrate dehydrogenase [NADP], at 1,914,389 to 1,915,639
_01820
Position (kb)
1913
1914 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1913.148 kb on + strand at 1913.149 kb on - strand at 1913.265 kb on - strand, within MPMX20_01818 at 1913.268 kb on + strand, within MPMX20_01818 at 1913.276 kb on - strand, within MPMX20_01818 at 1913.290 kb on + strand, within MPMX20_01818 at 1913.296 kb on - strand, within MPMX20_01818 at 1913.300 kb on + strand, within MPMX20_01818 at 1913.323 kb on + strand, within MPMX20_01818 at 1913.323 kb on + strand, within MPMX20_01818 at 1913.331 kb on - strand, within MPMX20_01818 at 1913.355 kb on - strand, within MPMX20_01818 at 1913.394 kb on + strand, within MPMX20_01818 at 1913.498 kb on - strand, within MPMX20_01818 at 1913.550 kb on + strand, within MPMX20_01818 at 1913.558 kb on - strand, within MPMX20_01818 at 1913.564 kb on - strand at 1913.591 kb on + strand at 1913.598 kb on + strand at 1913.599 kb on + strand at 1913.616 kb on + strand at 1913.624 kb on - strand at 1913.631 kb on - strand at 1913.675 kb on - strand at 1913.692 kb on + strand, within MPMX20_01819 at 1913.698 kb on + strand, within MPMX20_01819 at 1913.698 kb on + strand, within MPMX20_01819 at 1913.698 kb on + strand, within MPMX20_01819 at 1913.706 kb on - strand, within MPMX20_01819 at 1913.706 kb on - strand, within MPMX20_01819 at 1913.706 kb on - strand, within MPMX20_01819 at 1913.711 kb on - strand, within MPMX20_01819 at 1913.713 kb on + strand, within MPMX20_01819 at 1913.758 kb on + strand, within MPMX20_01819 at 1913.790 kb on - strand, within MPMX20_01819 at 1913.790 kb on - strand, within MPMX20_01819 at 1913.861 kb on - strand, within MPMX20_01819 at 1913.863 kb on + strand, within MPMX20_01819 at 1913.874 kb on + strand, within MPMX20_01819 at 1913.874 kb on + strand, within MPMX20_01819 at 1913.884 kb on - strand, within MPMX20_01819 at 1913.943 kb on + strand, within MPMX20_01819 at 1913.987 kb on - strand, within MPMX20_01819 at 1913.987 kb on - strand, within MPMX20_01819 at 1913.987 kb on - strand, within MPMX20_01819 at 1914.019 kb on - strand, within MPMX20_01819 at 1914.067 kb on - strand, within MPMX20_01819 at 1914.072 kb on + strand, within MPMX20_01819 at 1914.113 kb on - strand, within MPMX20_01819 at 1914.164 kb on + strand, within MPMX20_01819 at 1914.308 kb on - strand at 1914.385 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 1,913,148 + +0.3 1,913,149 - +1.8 1,913,265 - MPMX20_01818 0.27 -2.0 1,913,268 + MPMX20_01818 0.28 -2.5 1,913,276 - MPMX20_01818 0.30 +2.9 1,913,290 + MPMX20_01818 0.33 -1.4 1,913,296 - MPMX20_01818 0.34 +1.8 1,913,300 + MPMX20_01818 0.35 +1.2 1,913,323 + MPMX20_01818 0.40 +0.7 1,913,323 + MPMX20_01818 0.40 -2.0 1,913,331 - MPMX20_01818 0.41 -3.3 1,913,355 - MPMX20_01818 0.46 +2.3 1,913,394 + MPMX20_01818 0.55 +0.4 1,913,498 - MPMX20_01818 0.77 +1.1 1,913,550 + MPMX20_01818 0.88 +3.2 1,913,558 - MPMX20_01818 0.89 -1.5 1,913,564 - -2.5 1,913,591 + -1.2 1,913,598 + -0.9 1,913,599 + -2.8 1,913,616 + +3.0 1,913,624 - -3.8 1,913,631 - -0.1 1,913,675 - +0.4 1,913,692 + MPMX20_01819 0.11 +0.8 1,913,698 + MPMX20_01819 0.12 +0.8 1,913,698 + MPMX20_01819 0.12 +2.0 1,913,698 + MPMX20_01819 0.12 +2.8 1,913,706 - MPMX20_01819 0.13 +0.7 1,913,706 - MPMX20_01819 0.13 +0.8 1,913,706 - MPMX20_01819 0.13 +0.4 1,913,711 - MPMX20_01819 0.14 +0.6 1,913,713 + MPMX20_01819 0.15 -0.5 1,913,758 + MPMX20_01819 0.21 -2.1 1,913,790 - MPMX20_01819 0.26 -0.5 1,913,790 - MPMX20_01819 0.26 +2.2 1,913,861 - MPMX20_01819 0.37 +2.8 1,913,863 + MPMX20_01819 0.37 -0.3 1,913,874 + MPMX20_01819 0.39 +1.8 1,913,874 + MPMX20_01819 0.39 -0.5 1,913,884 - MPMX20_01819 0.41 -0.4 1,913,943 + MPMX20_01819 0.50 +1.9 1,913,987 - MPMX20_01819 0.56 -1.6 1,913,987 - MPMX20_01819 0.56 -1.7 1,913,987 - MPMX20_01819 0.56 +0.7 1,914,019 - MPMX20_01819 0.61 -0.9 1,914,067 - MPMX20_01819 0.69 +0.4 1,914,072 + MPMX20_01819 0.69 +0.6 1,914,113 - MPMX20_01819 0.76 -0.7 1,914,164 + MPMX20_01819 0.83 -0.3 1,914,308 - +1.0 1,914,385 - -0.0
Or see this region's nucleotide sequence