Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01818

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01817 and MPMX20_01818 overlap by 17 nucleotidesMPMX20_01818 and MPMX20_01819 are separated by 9 nucleotidesMPMX20_01819 and MPMX20_01820 are separated by 117 nucleotides MPMX20_01817: MPMX20_01817 - tRNA-specific 2-thiouridylase MnmA, at 1,911,982 to 1,913,151 _01817 MPMX20_01818: MPMX20_01818 - Phosphatase NudJ, at 1,913,135 to 1,913,608 _01818 MPMX20_01819: MPMX20_01819 - Ribosomal large subunit pseudouridine synthase E, at 1,913,618 to 1,914,271 _01819 MPMX20_01820: MPMX20_01820 - Isocitrate dehydrogenase [NADP], at 1,914,389 to 1,915,639 _01820 Position (kb) 1913 1914Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1913.148 kb on + strandat 1913.149 kb on - strandat 1913.265 kb on - strand, within MPMX20_01818at 1913.268 kb on + strand, within MPMX20_01818at 1913.276 kb on - strand, within MPMX20_01818at 1913.290 kb on + strand, within MPMX20_01818at 1913.296 kb on - strand, within MPMX20_01818at 1913.300 kb on + strand, within MPMX20_01818at 1913.323 kb on + strand, within MPMX20_01818at 1913.323 kb on + strand, within MPMX20_01818at 1913.331 kb on - strand, within MPMX20_01818at 1913.355 kb on - strand, within MPMX20_01818at 1913.394 kb on + strand, within MPMX20_01818at 1913.498 kb on - strand, within MPMX20_01818at 1913.550 kb on + strand, within MPMX20_01818at 1913.558 kb on - strand, within MPMX20_01818at 1913.564 kb on - strandat 1913.591 kb on + strandat 1913.598 kb on + strandat 1913.599 kb on + strandat 1913.616 kb on + strandat 1913.624 kb on - strandat 1913.631 kb on - strandat 1913.675 kb on - strandat 1913.692 kb on + strand, within MPMX20_01819at 1913.698 kb on + strand, within MPMX20_01819at 1913.698 kb on + strand, within MPMX20_01819at 1913.698 kb on + strand, within MPMX20_01819at 1913.706 kb on - strand, within MPMX20_01819at 1913.706 kb on - strand, within MPMX20_01819at 1913.706 kb on - strand, within MPMX20_01819at 1913.711 kb on - strand, within MPMX20_01819at 1913.713 kb on + strand, within MPMX20_01819at 1913.758 kb on + strand, within MPMX20_01819at 1913.790 kb on - strand, within MPMX20_01819at 1913.790 kb on - strand, within MPMX20_01819at 1913.861 kb on - strand, within MPMX20_01819at 1913.863 kb on + strand, within MPMX20_01819at 1913.874 kb on + strand, within MPMX20_01819at 1913.874 kb on + strand, within MPMX20_01819at 1913.884 kb on - strand, within MPMX20_01819at 1913.943 kb on + strand, within MPMX20_01819at 1913.987 kb on - strand, within MPMX20_01819at 1913.987 kb on - strand, within MPMX20_01819at 1913.987 kb on - strand, within MPMX20_01819at 1914.019 kb on - strand, within MPMX20_01819at 1914.067 kb on - strand, within MPMX20_01819at 1914.072 kb on + strand, within MPMX20_01819at 1914.113 kb on - strand, within MPMX20_01819at 1914.164 kb on + strand, within MPMX20_01819at 1914.308 kb on - strandat 1914.385 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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1,913,148 + +0.3
1,913,149 - +1.8
1,913,265 - MPMX20_01818 0.27 -2.0
1,913,268 + MPMX20_01818 0.28 -2.5
1,913,276 - MPMX20_01818 0.30 +2.9
1,913,290 + MPMX20_01818 0.33 -1.4
1,913,296 - MPMX20_01818 0.34 +1.8
1,913,300 + MPMX20_01818 0.35 +1.2
1,913,323 + MPMX20_01818 0.40 +0.7
1,913,323 + MPMX20_01818 0.40 -2.0
1,913,331 - MPMX20_01818 0.41 -3.3
1,913,355 - MPMX20_01818 0.46 +2.3
1,913,394 + MPMX20_01818 0.55 +0.4
1,913,498 - MPMX20_01818 0.77 +1.1
1,913,550 + MPMX20_01818 0.88 +3.2
1,913,558 - MPMX20_01818 0.89 -1.5
1,913,564 - -2.5
1,913,591 + -1.2
1,913,598 + -0.9
1,913,599 + -2.8
1,913,616 + +3.0
1,913,624 - -3.8
1,913,631 - -0.1
1,913,675 - +0.4
1,913,692 + MPMX20_01819 0.11 +0.8
1,913,698 + MPMX20_01819 0.12 +0.8
1,913,698 + MPMX20_01819 0.12 +2.0
1,913,698 + MPMX20_01819 0.12 +2.8
1,913,706 - MPMX20_01819 0.13 +0.7
1,913,706 - MPMX20_01819 0.13 +0.8
1,913,706 - MPMX20_01819 0.13 +0.4
1,913,711 - MPMX20_01819 0.14 +0.6
1,913,713 + MPMX20_01819 0.15 -0.5
1,913,758 + MPMX20_01819 0.21 -2.1
1,913,790 - MPMX20_01819 0.26 -0.5
1,913,790 - MPMX20_01819 0.26 +2.2
1,913,861 - MPMX20_01819 0.37 +2.8
1,913,863 + MPMX20_01819 0.37 -0.3
1,913,874 + MPMX20_01819 0.39 +1.8
1,913,874 + MPMX20_01819 0.39 -0.5
1,913,884 - MPMX20_01819 0.41 -0.4
1,913,943 + MPMX20_01819 0.50 +1.9
1,913,987 - MPMX20_01819 0.56 -1.6
1,913,987 - MPMX20_01819 0.56 -1.7
1,913,987 - MPMX20_01819 0.56 +0.7
1,914,019 - MPMX20_01819 0.61 -0.9
1,914,067 - MPMX20_01819 0.69 +0.4
1,914,072 + MPMX20_01819 0.69 +0.6
1,914,113 - MPMX20_01819 0.76 -0.7
1,914,164 + MPMX20_01819 0.83 -0.3
1,914,308 - +1.0
1,914,385 - -0.0

Or see this region's nucleotide sequence