Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01779 and MPMX20_01780 are separated by 10 nucleotides MPMX20_01780 and MPMX20_01781 are separated by 297 nucleotides
MPMX20_01779: MPMX20_01779 - DNA polymerase III subunit delta', at 1,870,835 to 1,871,839
_01779
MPMX20_01780: MPMX20_01780 - putative metal-dependent hydrolase YcfH, at 1,871,850 to 1,872,644
_01780
MPMX20_01781: MPMX20_01781 - PTS system glucose-specific EIICB component, at 1,872,942 to 1,874,375
_01781
Position (kb)
1871
1872
1873 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1871.927 kb on + strand at 1871.927 kb on + strand at 1871.935 kb on - strand, within MPMX20_01780 at 1871.935 kb on - strand, within MPMX20_01780 at 1872.140 kb on + strand, within MPMX20_01780 at 1872.140 kb on + strand, within MPMX20_01780 at 1872.140 kb on + strand, within MPMX20_01780 at 1872.184 kb on + strand, within MPMX20_01780 at 1872.306 kb on + strand, within MPMX20_01780 at 1872.314 kb on - strand, within MPMX20_01780 at 1872.314 kb on - strand, within MPMX20_01780 at 1872.395 kb on + strand, within MPMX20_01780 at 1872.395 kb on + strand, within MPMX20_01780 at 1872.403 kb on - strand, within MPMX20_01780 at 1872.513 kb on + strand, within MPMX20_01780 at 1872.521 kb on - strand, within MPMX20_01780 at 1872.526 kb on - strand, within MPMX20_01780 at 1872.531 kb on + strand, within MPMX20_01780 at 1872.548 kb on + strand, within MPMX20_01780 at 1872.556 kb on - strand, within MPMX20_01780 at 1872.570 kb on - strand at 1872.583 kb on - strand at 1872.598 kb on + strand at 1872.608 kb on + strand at 1872.608 kb on + strand at 1872.616 kb on - strand at 1872.616 kb on - strand at 1872.616 kb on - strand at 1872.616 kb on - strand at 1872.700 kb on + strand at 1872.784 kb on - strand at 1872.784 kb on - strand at 1872.862 kb on - strand at 1872.867 kb on - strand at 1872.876 kb on + strand at 1872.876 kb on + strand at 1872.933 kb on + strand at 1872.952 kb on - strand at 1872.995 kb on + strand at 1873.010 kb on + strand at 1873.093 kb on - strand, within MPMX20_01781 at 1873.127 kb on - strand, within MPMX20_01781 at 1873.143 kb on + strand, within MPMX20_01781 at 1873.146 kb on - strand, within MPMX20_01781 at 1873.146 kb on - strand, within MPMX20_01781 at 1873.151 kb on - strand, within MPMX20_01781 at 1873.265 kb on - strand, within MPMX20_01781 at 1873.301 kb on - strand, within MPMX20_01781 at 1873.301 kb on - strand, within MPMX20_01781 at 1873.359 kb on + strand, within MPMX20_01781 at 1873.476 kb on + strand, within MPMX20_01781 at 1873.575 kb on - strand, within MPMX20_01781 at 1873.585 kb on - strand, within MPMX20_01781
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 1,871,927 + +2.3 1,871,927 + -0.9 1,871,935 - MPMX20_01780 0.11 -0.9 1,871,935 - MPMX20_01780 0.11 -2.6 1,872,140 + MPMX20_01780 0.36 +2.0 1,872,140 + MPMX20_01780 0.36 +1.4 1,872,140 + MPMX20_01780 0.36 +2.7 1,872,184 + MPMX20_01780 0.42 +1.2 1,872,306 + MPMX20_01780 0.57 +0.7 1,872,314 - MPMX20_01780 0.58 -0.6 1,872,314 - MPMX20_01780 0.58 +0.7 1,872,395 + MPMX20_01780 0.69 +2.1 1,872,395 + MPMX20_01780 0.69 +3.3 1,872,403 - MPMX20_01780 0.70 +1.3 1,872,513 + MPMX20_01780 0.83 -0.0 1,872,521 - MPMX20_01780 0.84 +1.7 1,872,526 - MPMX20_01780 0.85 -2.5 1,872,531 + MPMX20_01780 0.86 -3.3 1,872,548 + MPMX20_01780 0.88 -0.5 1,872,556 - MPMX20_01780 0.89 -2.1 1,872,570 - -2.2 1,872,583 - +3.1 1,872,598 + +1.5 1,872,608 + -0.5 1,872,608 + -3.5 1,872,616 - -3.7 1,872,616 - +0.3 1,872,616 - +1.5 1,872,616 - +1.1 1,872,700 + +2.1 1,872,784 - -1.1 1,872,784 - -0.5 1,872,862 - -1.4 1,872,867 - +0.3 1,872,876 + +1.0 1,872,876 + +2.6 1,872,933 + +2.0 1,872,952 - -2.9 1,872,995 + +0.8 1,873,010 + +3.0 1,873,093 - MPMX20_01781 0.11 -2.2 1,873,127 - MPMX20_01781 0.13 +2.1 1,873,143 + MPMX20_01781 0.14 +0.9 1,873,146 - MPMX20_01781 0.14 -2.9 1,873,146 - MPMX20_01781 0.14 +1.6 1,873,151 - MPMX20_01781 0.15 -3.1 1,873,265 - MPMX20_01781 0.23 -0.2 1,873,301 - MPMX20_01781 0.25 -2.7 1,873,301 - MPMX20_01781 0.25 -0.7 1,873,359 + MPMX20_01781 0.29 -3.3 1,873,476 + MPMX20_01781 0.37 +0.9 1,873,575 - MPMX20_01781 0.44 -1.6 1,873,585 - MPMX20_01781 0.45 -0.3
Or see this region's nucleotide sequence