Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01775

Experiment: octanoate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01773 and MPMX20_01774 are separated by 154 nucleotidesMPMX20_01774 and MPMX20_01775 are separated by 89 nucleotidesMPMX20_01775 and MPMX20_01776 are separated by 121 nucleotidesMPMX20_01776 and MPMX20_01777 are separated by 2 nucleotides MPMX20_01773: MPMX20_01773 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 1,865,795 to 1,866,529 _01773 MPMX20_01774: MPMX20_01774 - Acyl carrier protein, at 1,866,684 to 1,866,920 _01774 MPMX20_01775: MPMX20_01775 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 1,867,010 to 1,868,251 _01775 MPMX20_01776: MPMX20_01776 - Aminodeoxychorismate lyase, at 1,868,373 to 1,869,182 _01776 MPMX20_01777: MPMX20_01777 - Endolytic murein transglycosylase, at 1,869,185 to 1,870,207 _01777 Position (kb) 1867 1868 1869Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1867.031 kb on - strandat 1867.031 kb on - strandat 1867.118 kb on - strandat 1867.213 kb on + strand, within MPMX20_01775at 1867.221 kb on - strand, within MPMX20_01775at 1867.280 kb on - strand, within MPMX20_01775at 1867.349 kb on - strand, within MPMX20_01775at 1867.365 kb on + strand, within MPMX20_01775at 1867.370 kb on + strand, within MPMX20_01775at 1867.371 kb on - strand, within MPMX20_01775at 1867.503 kb on + strand, within MPMX20_01775at 1867.503 kb on + strand, within MPMX20_01775at 1867.623 kb on - strand, within MPMX20_01775at 1867.713 kb on - strand, within MPMX20_01775at 1867.736 kb on - strand, within MPMX20_01775at 1867.773 kb on + strand, within MPMX20_01775at 1867.813 kb on + strand, within MPMX20_01775at 1867.869 kb on - strand, within MPMX20_01775at 1867.917 kb on - strand, within MPMX20_01775at 1867.929 kb on - strand, within MPMX20_01775at 1867.964 kb on + strand, within MPMX20_01775at 1868.075 kb on - strand, within MPMX20_01775at 1868.075 kb on - strand, within MPMX20_01775at 1868.094 kb on - strand, within MPMX20_01775at 1868.134 kb on - strandat 1868.146 kb on - strandat 1868.175 kb on + strandat 1868.175 kb on + strandat 1868.183 kb on + strandat 1868.183 kb on + strandat 1868.184 kb on + strandat 1868.185 kb on + strandat 1868.192 kb on - strandat 1868.194 kb on + strandat 1868.250 kb on + strandat 1868.315 kb on - strandat 1868.352 kb on - strandat 1868.354 kb on - strandat 1868.389 kb on + strandat 1868.389 kb on + strandat 1868.420 kb on - strandat 1868.420 kb on - strandat 1868.455 kb on - strand, within MPMX20_01776at 1868.511 kb on + strand, within MPMX20_01776at 1868.514 kb on - strand, within MPMX20_01776at 1868.688 kb on - strand, within MPMX20_01776at 1868.719 kb on + strand, within MPMX20_01776at 1868.719 kb on + strand, within MPMX20_01776at 1868.719 kb on + strand, within MPMX20_01776at 1868.727 kb on - strand, within MPMX20_01776at 1868.727 kb on - strand, within MPMX20_01776at 1868.771 kb on + strand, within MPMX20_01776at 1868.793 kb on + strand, within MPMX20_01776at 1868.793 kb on - strand, within MPMX20_01776at 1868.803 kb on + strand, within MPMX20_01776at 1868.803 kb on + strand, within MPMX20_01776at 1868.803 kb on + strand, within MPMX20_01776at 1869.009 kb on + strand, within MPMX20_01776at 1869.058 kb on - strand, within MPMX20_01776at 1869.114 kb on + strandat 1869.122 kb on - strandat 1869.168 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
remove
1,867,031 - -2.3
1,867,031 - -1.3
1,867,118 - -2.0
1,867,213 + MPMX20_01775 0.16 -1.4
1,867,221 - MPMX20_01775 0.17 +0.3
1,867,280 - MPMX20_01775 0.22 +2.9
1,867,349 - MPMX20_01775 0.27 -1.8
1,867,365 + MPMX20_01775 0.29 -1.3
1,867,370 + MPMX20_01775 0.29 +4.0
1,867,371 - MPMX20_01775 0.29 +0.5
1,867,503 + MPMX20_01775 0.40 -1.9
1,867,503 + MPMX20_01775 0.40 +2.8
1,867,623 - MPMX20_01775 0.49 +3.6
1,867,713 - MPMX20_01775 0.57 -0.7
1,867,736 - MPMX20_01775 0.58 +2.4
1,867,773 + MPMX20_01775 0.61 -3.3
1,867,813 + MPMX20_01775 0.65 -2.9
1,867,869 - MPMX20_01775 0.69 -0.3
1,867,917 - MPMX20_01775 0.73 -1.3
1,867,929 - MPMX20_01775 0.74 -0.3
1,867,964 + MPMX20_01775 0.77 +1.3
1,868,075 - MPMX20_01775 0.86 +2.5
1,868,075 - MPMX20_01775 0.86 -2.3
1,868,094 - MPMX20_01775 0.87 +4.6
1,868,134 - -1.3
1,868,146 - +3.0
1,868,175 + -3.8
1,868,175 + +2.5
1,868,183 + -1.9
1,868,183 + +3.9
1,868,184 + -1.2
1,868,185 + -1.0
1,868,192 - -1.6
1,868,194 + -0.3
1,868,250 + -1.0
1,868,315 - -2.3
1,868,352 - -2.6
1,868,354 - -1.3
1,868,389 + -1.2
1,868,389 + +0.8
1,868,420 - +1.5
1,868,420 - +1.1
1,868,455 - MPMX20_01776 0.10 -0.9
1,868,511 + MPMX20_01776 0.17 -2.5
1,868,514 - MPMX20_01776 0.17 +1.3
1,868,688 - MPMX20_01776 0.39 +0.7
1,868,719 + MPMX20_01776 0.43 -2.4
1,868,719 + MPMX20_01776 0.43 -1.7
1,868,719 + MPMX20_01776 0.43 -1.6
1,868,727 - MPMX20_01776 0.44 +0.5
1,868,727 - MPMX20_01776 0.44 -0.9
1,868,771 + MPMX20_01776 0.49 -1.2
1,868,793 + MPMX20_01776 0.52 +3.2
1,868,793 - MPMX20_01776 0.52 +2.3
1,868,803 + MPMX20_01776 0.53 -3.5
1,868,803 + MPMX20_01776 0.53 -0.1
1,868,803 + MPMX20_01776 0.53 +0.3
1,869,009 + MPMX20_01776 0.79 -2.2
1,869,058 - MPMX20_01776 0.85 +3.1
1,869,114 + +0.1
1,869,122 - -0.0
1,869,168 + -1.7

Or see this region's nucleotide sequence