Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01672 and MPMX20_01673 overlap by 4 nucleotides MPMX20_01673 and MPMX20_01674 overlap by 4 nucleotides
MPMX20_01672: MPMX20_01672 - (S)-ureidoglycine--glyoxylate transaminase, at 1,769,637 to 1,770,878
_01672
MPMX20_01673: MPMX20_01673 - N-carbamoyl-L-amino acid hydrolase, at 1,770,875 to 1,772,116
_01673
MPMX20_01674: MPMX20_01674 - Maltose/maltodextrin import ATP-binding protein MalK, at 1,772,113 to 1,773,228
_01674
Position (kb)
1770
1771
1772
1773 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1769.943 kb on - strand, within MPMX20_01672 at 1769.975 kb on + strand, within MPMX20_01672 at 1769.975 kb on + strand, within MPMX20_01672 at 1769.975 kb on + strand, within MPMX20_01672 at 1770.023 kb on + strand, within MPMX20_01672 at 1770.059 kb on + strand, within MPMX20_01672 at 1770.059 kb on + strand, within MPMX20_01672 at 1770.059 kb on + strand, within MPMX20_01672 at 1770.059 kb on + strand, within MPMX20_01672 at 1770.077 kb on - strand, within MPMX20_01672 at 1770.113 kb on + strand, within MPMX20_01672 at 1770.121 kb on - strand, within MPMX20_01672 at 1770.141 kb on + strand, within MPMX20_01672 at 1770.160 kb on + strand, within MPMX20_01672 at 1770.193 kb on - strand, within MPMX20_01672 at 1770.259 kb on - strand, within MPMX20_01672 at 1770.273 kb on - strand, within MPMX20_01672 at 1770.283 kb on + strand, within MPMX20_01672 at 1770.407 kb on + strand, within MPMX20_01672 at 1770.463 kb on - strand, within MPMX20_01672 at 1770.532 kb on + strand, within MPMX20_01672 at 1770.532 kb on + strand, within MPMX20_01672 at 1770.533 kb on - strand, within MPMX20_01672 at 1770.535 kb on - strand, within MPMX20_01672 at 1770.542 kb on + strand, within MPMX20_01672 at 1770.542 kb on + strand, within MPMX20_01672 at 1770.550 kb on + strand, within MPMX20_01672 at 1770.596 kb on + strand, within MPMX20_01672 at 1770.758 kb on - strand at 1770.762 kb on + strand at 1770.772 kb on + strand at 1770.792 kb on + strand at 1770.792 kb on + strand at 1770.800 kb on - strand at 1770.824 kb on + strand at 1770.832 kb on - strand at 1770.924 kb on + strand at 1771.020 kb on + strand, within MPMX20_01673 at 1771.028 kb on - strand, within MPMX20_01673 at 1771.054 kb on - strand, within MPMX20_01673 at 1771.109 kb on + strand, within MPMX20_01673 at 1771.109 kb on + strand, within MPMX20_01673 at 1771.124 kb on + strand, within MPMX20_01673 at 1771.124 kb on + strand, within MPMX20_01673 at 1771.124 kb on + strand, within MPMX20_01673 at 1771.124 kb on + strand, within MPMX20_01673 at 1771.132 kb on - strand, within MPMX20_01673 at 1771.132 kb on - strand, within MPMX20_01673 at 1771.132 kb on - strand, within MPMX20_01673 at 1771.299 kb on - strand, within MPMX20_01673 at 1771.385 kb on + strand, within MPMX20_01673 at 1771.386 kb on + strand, within MPMX20_01673 at 1771.386 kb on + strand, within MPMX20_01673 at 1771.393 kb on - strand, within MPMX20_01673 at 1771.473 kb on + strand, within MPMX20_01673 at 1771.473 kb on + strand, within MPMX20_01673 at 1771.481 kb on - strand, within MPMX20_01673 at 1771.496 kb on - strand, within MPMX20_01673 at 1771.498 kb on + strand, within MPMX20_01673 at 1771.529 kb on + strand, within MPMX20_01673 at 1771.564 kb on + strand, within MPMX20_01673 at 1771.564 kb on + strand, within MPMX20_01673 at 1771.572 kb on - strand, within MPMX20_01673 at 1771.572 kb on - strand, within MPMX20_01673 at 1771.696 kb on + strand, within MPMX20_01673 at 1771.735 kb on + strand, within MPMX20_01673 at 1771.792 kb on + strand, within MPMX20_01673 at 1771.815 kb on - strand, within MPMX20_01673 at 1771.871 kb on - strand, within MPMX20_01673 at 1771.899 kb on - strand, within MPMX20_01673 at 1771.903 kb on - strand, within MPMX20_01673 at 1771.981 kb on + strand, within MPMX20_01673 at 1771.983 kb on - strand, within MPMX20_01673 at 1772.011 kb on + strand at 1772.011 kb on + strand at 1772.011 kb on + strand at 1772.011 kb on + strand at 1772.013 kb on + strand at 1772.142 kb on + strand at 1772.147 kb on + strand at 1772.156 kb on + strand at 1772.263 kb on + strand, within MPMX20_01674 at 1772.270 kb on + strand, within MPMX20_01674 at 1772.407 kb on + strand, within MPMX20_01674 at 1772.415 kb on - strand, within MPMX20_01674 at 1772.425 kb on - strand, within MPMX20_01674 at 1772.427 kb on + strand, within MPMX20_01674 at 1772.433 kb on + strand, within MPMX20_01674 at 1772.433 kb on + strand, within MPMX20_01674 at 1772.435 kb on - strand, within MPMX20_01674 at 1772.435 kb on - strand, within MPMX20_01674 at 1772.441 kb on - strand, within MPMX20_01674 at 1772.556 kb on + strand, within MPMX20_01674 at 1772.649 kb on + strand, within MPMX20_01674 at 1772.649 kb on + strand, within MPMX20_01674 at 1772.668 kb on - strand, within MPMX20_01674 at 1772.668 kb on - strand, within MPMX20_01674 at 1772.668 kb on - strand, within MPMX20_01674 at 1772.698 kb on + strand, within MPMX20_01674 at 1772.787 kb on - strand, within MPMX20_01674 at 1772.815 kb on - strand, within MPMX20_01674 at 1772.845 kb on - strand, within MPMX20_01674 at 1772.882 kb on + strand, within MPMX20_01674 at 1772.890 kb on - strand, within MPMX20_01674 at 1772.940 kb on - strand, within MPMX20_01674 at 1772.989 kb on + strand, within MPMX20_01674 at 1773.007 kb on + strand, within MPMX20_01674 at 1773.033 kb on + strand, within MPMX20_01674 at 1773.112 kb on + strand, within MPMX20_01674
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 1,769,943 - MPMX20_01672 0.25 -0.5 1,769,975 + MPMX20_01672 0.27 -2.8 1,769,975 + MPMX20_01672 0.27 +1.7 1,769,975 + MPMX20_01672 0.27 -3.1 1,770,023 + MPMX20_01672 0.31 -2.0 1,770,059 + MPMX20_01672 0.34 +2.4 1,770,059 + MPMX20_01672 0.34 -3.0 1,770,059 + MPMX20_01672 0.34 +0.0 1,770,059 + MPMX20_01672 0.34 +1.4 1,770,077 - MPMX20_01672 0.35 +2.5 1,770,113 + MPMX20_01672 0.38 +2.0 1,770,121 - MPMX20_01672 0.39 -2.0 1,770,141 + MPMX20_01672 0.41 +3.2 1,770,160 + MPMX20_01672 0.42 -1.6 1,770,193 - MPMX20_01672 0.45 -2.1 1,770,259 - MPMX20_01672 0.50 +0.8 1,770,273 - MPMX20_01672 0.51 -0.6 1,770,283 + MPMX20_01672 0.52 +1.3 1,770,407 + MPMX20_01672 0.62 +1.2 1,770,463 - MPMX20_01672 0.67 -3.1 1,770,532 + MPMX20_01672 0.72 +0.7 1,770,532 + MPMX20_01672 0.72 +1.1 1,770,533 - MPMX20_01672 0.72 +1.2 1,770,535 - MPMX20_01672 0.72 -1.0 1,770,542 + MPMX20_01672 0.73 -2.2 1,770,542 + MPMX20_01672 0.73 +1.4 1,770,550 + MPMX20_01672 0.74 +0.0 1,770,596 + MPMX20_01672 0.77 +0.5 1,770,758 - -1.9 1,770,762 + -0.6 1,770,772 + +0.2 1,770,792 + +2.4 1,770,792 + +1.0 1,770,800 - +1.4 1,770,824 + -2.9 1,770,832 - -0.2 1,770,924 + +0.5 1,771,020 + MPMX20_01673 0.12 -0.5 1,771,028 - MPMX20_01673 0.12 +2.7 1,771,054 - MPMX20_01673 0.14 +2.6 1,771,109 + MPMX20_01673 0.19 +1.5 1,771,109 + MPMX20_01673 0.19 +0.7 1,771,124 + MPMX20_01673 0.20 -3.0 1,771,124 + MPMX20_01673 0.20 +1.6 1,771,124 + MPMX20_01673 0.20 +1.5 1,771,124 + MPMX20_01673 0.20 +0.2 1,771,132 - MPMX20_01673 0.21 +2.4 1,771,132 - MPMX20_01673 0.21 +2.4 1,771,132 - MPMX20_01673 0.21 +1.1 1,771,299 - MPMX20_01673 0.34 -1.7 1,771,385 + MPMX20_01673 0.41 -0.2 1,771,386 + MPMX20_01673 0.41 -0.1 1,771,386 + MPMX20_01673 0.41 +0.3 1,771,393 - MPMX20_01673 0.42 +2.8 1,771,473 + MPMX20_01673 0.48 +3.5 1,771,473 + MPMX20_01673 0.48 +2.5 1,771,481 - MPMX20_01673 0.49 -3.0 1,771,496 - MPMX20_01673 0.50 +3.4 1,771,498 + MPMX20_01673 0.50 +1.2 1,771,529 + MPMX20_01673 0.53 +0.1 1,771,564 + MPMX20_01673 0.55 -2.9 1,771,564 + MPMX20_01673 0.55 +1.3 1,771,572 - MPMX20_01673 0.56 -0.2 1,771,572 - MPMX20_01673 0.56 -0.2 1,771,696 + MPMX20_01673 0.66 +0.0 1,771,735 + MPMX20_01673 0.69 +3.0 1,771,792 + MPMX20_01673 0.74 +1.9 1,771,815 - MPMX20_01673 0.76 -1.2 1,771,871 - MPMX20_01673 0.80 -4.0 1,771,899 - MPMX20_01673 0.82 -2.6 1,771,903 - MPMX20_01673 0.83 -2.7 1,771,981 + MPMX20_01673 0.89 +3.3 1,771,983 - MPMX20_01673 0.89 -3.6 1,772,011 + +1.9 1,772,011 + -1.9 1,772,011 + -0.9 1,772,011 + -3.8 1,772,013 + +0.7 1,772,142 + +3.2 1,772,147 + -2.5 1,772,156 + -3.0 1,772,263 + MPMX20_01674 0.13 -2.3 1,772,270 + MPMX20_01674 0.14 +1.7 1,772,407 + MPMX20_01674 0.26 -0.8 1,772,415 - MPMX20_01674 0.27 -0.2 1,772,425 - MPMX20_01674 0.28 +0.9 1,772,427 + MPMX20_01674 0.28 -2.6 1,772,433 + MPMX20_01674 0.29 -2.3 1,772,433 + MPMX20_01674 0.29 +2.1 1,772,435 - MPMX20_01674 0.29 -0.6 1,772,435 - MPMX20_01674 0.29 +1.1 1,772,441 - MPMX20_01674 0.29 -2.5 1,772,556 + MPMX20_01674 0.40 +1.0 1,772,649 + MPMX20_01674 0.48 -0.8 1,772,649 + MPMX20_01674 0.48 -1.1 1,772,668 - MPMX20_01674 0.50 -1.7 1,772,668 - MPMX20_01674 0.50 +0.7 1,772,668 - MPMX20_01674 0.50 -2.7 1,772,698 + MPMX20_01674 0.52 -2.0 1,772,787 - MPMX20_01674 0.60 +0.8 1,772,815 - MPMX20_01674 0.63 -2.3 1,772,845 - MPMX20_01674 0.66 +1.1 1,772,882 + MPMX20_01674 0.69 +1.5 1,772,890 - MPMX20_01674 0.70 -3.8 1,772,940 - MPMX20_01674 0.74 +1.6 1,772,989 + MPMX20_01674 0.78 -3.3 1,773,007 + MPMX20_01674 0.80 -2.2 1,773,033 + MPMX20_01674 0.82 -2.5 1,773,112 + MPMX20_01674 0.90 +0.8
Or see this region's nucleotide sequence