Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01673

Experiment: octanoate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01672 and MPMX20_01673 overlap by 4 nucleotidesMPMX20_01673 and MPMX20_01674 overlap by 4 nucleotides MPMX20_01672: MPMX20_01672 - (S)-ureidoglycine--glyoxylate transaminase, at 1,769,637 to 1,770,878 _01672 MPMX20_01673: MPMX20_01673 - N-carbamoyl-L-amino acid hydrolase, at 1,770,875 to 1,772,116 _01673 MPMX20_01674: MPMX20_01674 - Maltose/maltodextrin import ATP-binding protein MalK, at 1,772,113 to 1,773,228 _01674 Position (kb) 1770 1771 1772 1773Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1769.943 kb on - strand, within MPMX20_01672at 1769.975 kb on + strand, within MPMX20_01672at 1769.975 kb on + strand, within MPMX20_01672at 1769.975 kb on + strand, within MPMX20_01672at 1770.023 kb on + strand, within MPMX20_01672at 1770.059 kb on + strand, within MPMX20_01672at 1770.059 kb on + strand, within MPMX20_01672at 1770.059 kb on + strand, within MPMX20_01672at 1770.059 kb on + strand, within MPMX20_01672at 1770.077 kb on - strand, within MPMX20_01672at 1770.113 kb on + strand, within MPMX20_01672at 1770.121 kb on - strand, within MPMX20_01672at 1770.141 kb on + strand, within MPMX20_01672at 1770.160 kb on + strand, within MPMX20_01672at 1770.193 kb on - strand, within MPMX20_01672at 1770.259 kb on - strand, within MPMX20_01672at 1770.273 kb on - strand, within MPMX20_01672at 1770.283 kb on + strand, within MPMX20_01672at 1770.407 kb on + strand, within MPMX20_01672at 1770.463 kb on - strand, within MPMX20_01672at 1770.532 kb on + strand, within MPMX20_01672at 1770.532 kb on + strand, within MPMX20_01672at 1770.533 kb on - strand, within MPMX20_01672at 1770.535 kb on - strand, within MPMX20_01672at 1770.542 kb on + strand, within MPMX20_01672at 1770.542 kb on + strand, within MPMX20_01672at 1770.550 kb on + strand, within MPMX20_01672at 1770.596 kb on + strand, within MPMX20_01672at 1770.758 kb on - strandat 1770.762 kb on + strandat 1770.772 kb on + strandat 1770.792 kb on + strandat 1770.792 kb on + strandat 1770.800 kb on - strandat 1770.824 kb on + strandat 1770.832 kb on - strandat 1770.924 kb on + strandat 1771.020 kb on + strand, within MPMX20_01673at 1771.028 kb on - strand, within MPMX20_01673at 1771.054 kb on - strand, within MPMX20_01673at 1771.109 kb on + strand, within MPMX20_01673at 1771.109 kb on + strand, within MPMX20_01673at 1771.124 kb on + strand, within MPMX20_01673at 1771.124 kb on + strand, within MPMX20_01673at 1771.124 kb on + strand, within MPMX20_01673at 1771.124 kb on + strand, within MPMX20_01673at 1771.132 kb on - strand, within MPMX20_01673at 1771.132 kb on - strand, within MPMX20_01673at 1771.132 kb on - strand, within MPMX20_01673at 1771.299 kb on - strand, within MPMX20_01673at 1771.385 kb on + strand, within MPMX20_01673at 1771.386 kb on + strand, within MPMX20_01673at 1771.386 kb on + strand, within MPMX20_01673at 1771.393 kb on - strand, within MPMX20_01673at 1771.473 kb on + strand, within MPMX20_01673at 1771.473 kb on + strand, within MPMX20_01673at 1771.481 kb on - strand, within MPMX20_01673at 1771.496 kb on - strand, within MPMX20_01673at 1771.498 kb on + strand, within MPMX20_01673at 1771.529 kb on + strand, within MPMX20_01673at 1771.564 kb on + strand, within MPMX20_01673at 1771.564 kb on + strand, within MPMX20_01673at 1771.572 kb on - strand, within MPMX20_01673at 1771.572 kb on - strand, within MPMX20_01673at 1771.696 kb on + strand, within MPMX20_01673at 1771.735 kb on + strand, within MPMX20_01673at 1771.792 kb on + strand, within MPMX20_01673at 1771.815 kb on - strand, within MPMX20_01673at 1771.871 kb on - strand, within MPMX20_01673at 1771.899 kb on - strand, within MPMX20_01673at 1771.903 kb on - strand, within MPMX20_01673at 1771.981 kb on + strand, within MPMX20_01673at 1771.983 kb on - strand, within MPMX20_01673at 1772.011 kb on + strandat 1772.011 kb on + strandat 1772.011 kb on + strandat 1772.011 kb on + strandat 1772.013 kb on + strandat 1772.142 kb on + strandat 1772.147 kb on + strandat 1772.156 kb on + strandat 1772.263 kb on + strand, within MPMX20_01674at 1772.270 kb on + strand, within MPMX20_01674at 1772.407 kb on + strand, within MPMX20_01674at 1772.415 kb on - strand, within MPMX20_01674at 1772.425 kb on - strand, within MPMX20_01674at 1772.427 kb on + strand, within MPMX20_01674at 1772.433 kb on + strand, within MPMX20_01674at 1772.433 kb on + strand, within MPMX20_01674at 1772.435 kb on - strand, within MPMX20_01674at 1772.435 kb on - strand, within MPMX20_01674at 1772.441 kb on - strand, within MPMX20_01674at 1772.556 kb on + strand, within MPMX20_01674at 1772.649 kb on + strand, within MPMX20_01674at 1772.649 kb on + strand, within MPMX20_01674at 1772.668 kb on - strand, within MPMX20_01674at 1772.668 kb on - strand, within MPMX20_01674at 1772.668 kb on - strand, within MPMX20_01674at 1772.698 kb on + strand, within MPMX20_01674at 1772.787 kb on - strand, within MPMX20_01674at 1772.815 kb on - strand, within MPMX20_01674at 1772.845 kb on - strand, within MPMX20_01674at 1772.882 kb on + strand, within MPMX20_01674at 1772.890 kb on - strand, within MPMX20_01674at 1772.940 kb on - strand, within MPMX20_01674at 1772.989 kb on + strand, within MPMX20_01674at 1773.007 kb on + strand, within MPMX20_01674at 1773.033 kb on + strand, within MPMX20_01674at 1773.112 kb on + strand, within MPMX20_01674

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
remove
1,769,943 - MPMX20_01672 0.25 -0.5
1,769,975 + MPMX20_01672 0.27 -2.8
1,769,975 + MPMX20_01672 0.27 +1.7
1,769,975 + MPMX20_01672 0.27 -3.1
1,770,023 + MPMX20_01672 0.31 -2.0
1,770,059 + MPMX20_01672 0.34 +2.4
1,770,059 + MPMX20_01672 0.34 -3.0
1,770,059 + MPMX20_01672 0.34 +0.0
1,770,059 + MPMX20_01672 0.34 +1.4
1,770,077 - MPMX20_01672 0.35 +2.5
1,770,113 + MPMX20_01672 0.38 +2.0
1,770,121 - MPMX20_01672 0.39 -2.0
1,770,141 + MPMX20_01672 0.41 +3.2
1,770,160 + MPMX20_01672 0.42 -1.6
1,770,193 - MPMX20_01672 0.45 -2.1
1,770,259 - MPMX20_01672 0.50 +0.8
1,770,273 - MPMX20_01672 0.51 -0.6
1,770,283 + MPMX20_01672 0.52 +1.3
1,770,407 + MPMX20_01672 0.62 +1.2
1,770,463 - MPMX20_01672 0.67 -3.1
1,770,532 + MPMX20_01672 0.72 +0.7
1,770,532 + MPMX20_01672 0.72 +1.1
1,770,533 - MPMX20_01672 0.72 +1.2
1,770,535 - MPMX20_01672 0.72 -1.0
1,770,542 + MPMX20_01672 0.73 -2.2
1,770,542 + MPMX20_01672 0.73 +1.4
1,770,550 + MPMX20_01672 0.74 +0.0
1,770,596 + MPMX20_01672 0.77 +0.5
1,770,758 - -1.9
1,770,762 + -0.6
1,770,772 + +0.2
1,770,792 + +2.4
1,770,792 + +1.0
1,770,800 - +1.4
1,770,824 + -2.9
1,770,832 - -0.2
1,770,924 + +0.5
1,771,020 + MPMX20_01673 0.12 -0.5
1,771,028 - MPMX20_01673 0.12 +2.7
1,771,054 - MPMX20_01673 0.14 +2.6
1,771,109 + MPMX20_01673 0.19 +1.5
1,771,109 + MPMX20_01673 0.19 +0.7
1,771,124 + MPMX20_01673 0.20 -3.0
1,771,124 + MPMX20_01673 0.20 +1.6
1,771,124 + MPMX20_01673 0.20 +1.5
1,771,124 + MPMX20_01673 0.20 +0.2
1,771,132 - MPMX20_01673 0.21 +2.4
1,771,132 - MPMX20_01673 0.21 +2.4
1,771,132 - MPMX20_01673 0.21 +1.1
1,771,299 - MPMX20_01673 0.34 -1.7
1,771,385 + MPMX20_01673 0.41 -0.2
1,771,386 + MPMX20_01673 0.41 -0.1
1,771,386 + MPMX20_01673 0.41 +0.3
1,771,393 - MPMX20_01673 0.42 +2.8
1,771,473 + MPMX20_01673 0.48 +3.5
1,771,473 + MPMX20_01673 0.48 +2.5
1,771,481 - MPMX20_01673 0.49 -3.0
1,771,496 - MPMX20_01673 0.50 +3.4
1,771,498 + MPMX20_01673 0.50 +1.2
1,771,529 + MPMX20_01673 0.53 +0.1
1,771,564 + MPMX20_01673 0.55 -2.9
1,771,564 + MPMX20_01673 0.55 +1.3
1,771,572 - MPMX20_01673 0.56 -0.2
1,771,572 - MPMX20_01673 0.56 -0.2
1,771,696 + MPMX20_01673 0.66 +0.0
1,771,735 + MPMX20_01673 0.69 +3.0
1,771,792 + MPMX20_01673 0.74 +1.9
1,771,815 - MPMX20_01673 0.76 -1.2
1,771,871 - MPMX20_01673 0.80 -4.0
1,771,899 - MPMX20_01673 0.82 -2.6
1,771,903 - MPMX20_01673 0.83 -2.7
1,771,981 + MPMX20_01673 0.89 +3.3
1,771,983 - MPMX20_01673 0.89 -3.6
1,772,011 + +1.9
1,772,011 + -1.9
1,772,011 + -0.9
1,772,011 + -3.8
1,772,013 + +0.7
1,772,142 + +3.2
1,772,147 + -2.5
1,772,156 + -3.0
1,772,263 + MPMX20_01674 0.13 -2.3
1,772,270 + MPMX20_01674 0.14 +1.7
1,772,407 + MPMX20_01674 0.26 -0.8
1,772,415 - MPMX20_01674 0.27 -0.2
1,772,425 - MPMX20_01674 0.28 +0.9
1,772,427 + MPMX20_01674 0.28 -2.6
1,772,433 + MPMX20_01674 0.29 -2.3
1,772,433 + MPMX20_01674 0.29 +2.1
1,772,435 - MPMX20_01674 0.29 -0.6
1,772,435 - MPMX20_01674 0.29 +1.1
1,772,441 - MPMX20_01674 0.29 -2.5
1,772,556 + MPMX20_01674 0.40 +1.0
1,772,649 + MPMX20_01674 0.48 -0.8
1,772,649 + MPMX20_01674 0.48 -1.1
1,772,668 - MPMX20_01674 0.50 -1.7
1,772,668 - MPMX20_01674 0.50 +0.7
1,772,668 - MPMX20_01674 0.50 -2.7
1,772,698 + MPMX20_01674 0.52 -2.0
1,772,787 - MPMX20_01674 0.60 +0.8
1,772,815 - MPMX20_01674 0.63 -2.3
1,772,845 - MPMX20_01674 0.66 +1.1
1,772,882 + MPMX20_01674 0.69 +1.5
1,772,890 - MPMX20_01674 0.70 -3.8
1,772,940 - MPMX20_01674 0.74 +1.6
1,772,989 + MPMX20_01674 0.78 -3.3
1,773,007 + MPMX20_01674 0.80 -2.2
1,773,033 + MPMX20_01674 0.82 -2.5
1,773,112 + MPMX20_01674 0.90 +0.8

Or see this region's nucleotide sequence