Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01607 and MPMX20_01608 are separated by 354 nucleotides MPMX20_01608 and MPMX20_01609 are separated by 163 nucleotides MPMX20_01609 and MPMX20_01610 overlap by 44 nucleotides
MPMX20_01607: MPMX20_01607 - Outer membrane protein A, at 1,699,326 to 1,700,381
_01607
MPMX20_01608: MPMX20_01608 - Cell division inhibitor SulA, at 1,700,736 to 1,701,299
_01608
MPMX20_01609: MPMX20_01609 - Protein Sxy, at 1,701,463 to 1,702,089
_01609
MPMX20_01610: MPMX20_01610 - Inner membrane protein YccS, at 1,702,046 to 1,704,208
_01610
Position (kb)
1700
1701
1702 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1699.986 kb on + strand, within MPMX20_01607 at 1700.011 kb on - strand, within MPMX20_01607 at 1700.031 kb on - strand, within MPMX20_01607 at 1700.058 kb on - strand, within MPMX20_01607 at 1700.087 kb on - strand, within MPMX20_01607 at 1700.137 kb on - strand, within MPMX20_01607 at 1700.139 kb on + strand, within MPMX20_01607 at 1700.147 kb on - strand, within MPMX20_01607 at 1700.175 kb on - strand, within MPMX20_01607 at 1700.200 kb on - strand, within MPMX20_01607 at 1700.227 kb on + strand, within MPMX20_01607 at 1700.265 kb on - strand, within MPMX20_01607 at 1700.327 kb on - strand at 1700.338 kb on + strand at 1700.346 kb on - strand at 1700.452 kb on - strand at 1700.485 kb on + strand at 1700.491 kb on + strand at 1700.498 kb on + strand at 1700.522 kb on + strand at 1700.530 kb on - strand at 1700.530 kb on - strand at 1700.530 kb on - strand at 1700.530 kb on - strand at 1700.530 kb on - strand at 1700.532 kb on - strand at 1700.548 kb on + strand at 1700.556 kb on - strand at 1700.556 kb on - strand at 1700.650 kb on + strand at 1700.650 kb on + strand at 1700.650 kb on + strand at 1700.658 kb on - strand at 1700.658 kb on - strand at 1700.774 kb on + strand at 1700.795 kb on - strand, within MPMX20_01608 at 1700.832 kb on + strand, within MPMX20_01608 at 1700.934 kb on + strand, within MPMX20_01608 at 1700.991 kb on - strand, within MPMX20_01608 at 1701.001 kb on + strand, within MPMX20_01608 at 1701.001 kb on + strand, within MPMX20_01608 at 1701.098 kb on + strand, within MPMX20_01608 at 1701.147 kb on + strand, within MPMX20_01608 at 1701.155 kb on - strand, within MPMX20_01608 at 1701.155 kb on - strand, within MPMX20_01608 at 1701.172 kb on + strand, within MPMX20_01608 at 1701.180 kb on - strand, within MPMX20_01608 at 1701.207 kb on + strand, within MPMX20_01608 at 1701.207 kb on - strand, within MPMX20_01608 at 1701.221 kb on + strand, within MPMX20_01608 at 1701.240 kb on - strand, within MPMX20_01608 at 1701.345 kb on + strand at 1701.515 kb on - strand at 1701.516 kb on - strand at 1701.533 kb on + strand, within MPMX20_01609 at 1701.534 kb on - strand, within MPMX20_01609 at 1701.541 kb on - strand, within MPMX20_01609 at 1701.541 kb on - strand, within MPMX20_01609 at 1701.541 kb on - strand, within MPMX20_01609 at 1701.543 kb on + strand, within MPMX20_01609 at 1701.551 kb on + strand, within MPMX20_01609 at 1701.561 kb on + strand, within MPMX20_01609 at 1701.610 kb on + strand, within MPMX20_01609 at 1701.610 kb on + strand, within MPMX20_01609 at 1701.612 kb on - strand, within MPMX20_01609 at 1701.680 kb on - strand, within MPMX20_01609 at 1701.686 kb on + strand, within MPMX20_01609 at 1701.722 kb on + strand, within MPMX20_01609 at 1701.740 kb on - strand, within MPMX20_01609 at 1701.747 kb on + strand, within MPMX20_01609 at 1701.861 kb on + strand, within MPMX20_01609 at 1701.861 kb on + strand, within MPMX20_01609 at 1701.961 kb on - strand, within MPMX20_01609 at 1701.961 kb on - strand, within MPMX20_01609 at 1701.961 kb on - strand, within MPMX20_01609 at 1701.971 kb on + strand, within MPMX20_01609 at 1701.975 kb on + strand, within MPMX20_01609 at 1701.983 kb on - strand, within MPMX20_01609 at 1701.986 kb on + strand, within MPMX20_01609 at 1701.986 kb on + strand, within MPMX20_01609 at 1702.002 kb on - strand, within MPMX20_01609 at 1702.011 kb on - strand, within MPMX20_01609 at 1702.039 kb on + strand at 1702.043 kb on + strand at 1702.051 kb on - strand at 1702.061 kb on + strand at 1702.064 kb on - strand at 1702.079 kb on + strand at 1702.253 kb on + strand at 1702.261 kb on - strand at 1702.284 kb on + strand, within MPMX20_01610
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 1,699,986 + MPMX20_01607 0.62 -1.4 1,700,011 - MPMX20_01607 0.65 -2.0 1,700,031 - MPMX20_01607 0.67 +0.3 1,700,058 - MPMX20_01607 0.69 -0.2 1,700,087 - MPMX20_01607 0.72 -2.0 1,700,137 - MPMX20_01607 0.77 -2.0 1,700,139 + MPMX20_01607 0.77 +0.8 1,700,147 - MPMX20_01607 0.78 -0.9 1,700,175 - MPMX20_01607 0.80 +0.1 1,700,200 - MPMX20_01607 0.83 -2.4 1,700,227 + MPMX20_01607 0.85 -1.3 1,700,265 - MPMX20_01607 0.89 -2.1 1,700,327 - -0.4 1,700,338 + +0.8 1,700,346 - -2.2 1,700,452 - -0.1 1,700,485 + +3.2 1,700,491 + -1.5 1,700,498 + -2.6 1,700,522 + -2.2 1,700,530 - -3.2 1,700,530 - -0.6 1,700,530 - +1.8 1,700,530 - -2.3 1,700,530 - +1.0 1,700,532 - -3.0 1,700,548 + -2.6 1,700,556 - +0.1 1,700,556 - +1.0 1,700,650 + -3.2 1,700,650 + -2.0 1,700,650 + -0.4 1,700,658 - +0.7 1,700,658 - +0.2 1,700,774 + +0.1 1,700,795 - MPMX20_01608 0.10 +2.1 1,700,832 + MPMX20_01608 0.17 -2.2 1,700,934 + MPMX20_01608 0.35 +0.1 1,700,991 - MPMX20_01608 0.45 +3.1 1,701,001 + MPMX20_01608 0.47 +1.5 1,701,001 + MPMX20_01608 0.47 +1.5 1,701,098 + MPMX20_01608 0.64 -2.2 1,701,147 + MPMX20_01608 0.73 +1.0 1,701,155 - MPMX20_01608 0.74 +1.0 1,701,155 - MPMX20_01608 0.74 -0.4 1,701,172 + MPMX20_01608 0.77 +0.3 1,701,180 - MPMX20_01608 0.79 -1.8 1,701,207 + MPMX20_01608 0.84 +0.8 1,701,207 - MPMX20_01608 0.84 -3.1 1,701,221 + MPMX20_01608 0.86 +3.2 1,701,240 - MPMX20_01608 0.89 +0.5 1,701,345 + -0.2 1,701,515 - -3.4 1,701,516 - -0.6 1,701,533 + MPMX20_01609 0.11 +1.3 1,701,534 - MPMX20_01609 0.11 +2.2 1,701,541 - MPMX20_01609 0.12 +0.4 1,701,541 - MPMX20_01609 0.12 -3.9 1,701,541 - MPMX20_01609 0.12 -3.4 1,701,543 + MPMX20_01609 0.13 +0.4 1,701,551 + MPMX20_01609 0.14 -3.0 1,701,561 + MPMX20_01609 0.16 +1.3 1,701,610 + MPMX20_01609 0.23 -2.2 1,701,610 + MPMX20_01609 0.23 -4.2 1,701,612 - MPMX20_01609 0.24 +1.1 1,701,680 - MPMX20_01609 0.35 -0.5 1,701,686 + MPMX20_01609 0.36 +2.3 1,701,722 + MPMX20_01609 0.41 +1.2 1,701,740 - MPMX20_01609 0.44 +1.5 1,701,747 + MPMX20_01609 0.45 +2.7 1,701,861 + MPMX20_01609 0.63 -0.1 1,701,861 + MPMX20_01609 0.63 -0.8 1,701,961 - MPMX20_01609 0.79 -0.4 1,701,961 - MPMX20_01609 0.79 -3.0 1,701,961 - MPMX20_01609 0.79 +0.4 1,701,971 + MPMX20_01609 0.81 -1.8 1,701,975 + MPMX20_01609 0.82 -2.8 1,701,983 - MPMX20_01609 0.83 +2.4 1,701,986 + MPMX20_01609 0.83 -0.6 1,701,986 + MPMX20_01609 0.83 -2.6 1,702,002 - MPMX20_01609 0.86 -0.9 1,702,011 - MPMX20_01609 0.87 +0.4 1,702,039 + -2.2 1,702,043 + -1.0 1,702,051 - +1.8 1,702,061 + +0.7 1,702,064 - +1.9 1,702,079 + +0.8 1,702,253 + +0.3 1,702,261 - +0.6 1,702,284 + MPMX20_01610 0.11 +2.0
Or see this region's nucleotide sequence