Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01532 and MPMX20_01533 are separated by 151 nucleotides MPMX20_01533 and MPMX20_01534 are separated by 45 nucleotides MPMX20_01534 and MPMX20_01535 are separated by 10 nucleotides
MPMX20_01532: MPMX20_01532 - Pyruvate dehydrogenase [ubiquinone], at 1,601,439 to 1,603,157
_01532
MPMX20_01533: MPMX20_01533 - hypothetical protein, at 1,603,309 to 1,603,743
_01533
MPMX20_01534: MPMX20_01534 - NADH oxidoreductase HCR, at 1,603,789 to 1,604,757
_01534
MPMX20_01535: MPMX20_01535 - Hydroxylamine reductase, at 1,604,768 to 1,606,420
_01535
Position (kb)
1603
1604
1605 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1602.808 kb on - strand, within MPMX20_01532 at 1602.905 kb on - strand, within MPMX20_01532 at 1602.905 kb on - strand, within MPMX20_01532 at 1602.917 kb on + strand, within MPMX20_01532 at 1602.932 kb on + strand, within MPMX20_01532 at 1602.941 kb on + strand, within MPMX20_01532 at 1602.964 kb on + strand, within MPMX20_01532 at 1602.972 kb on - strand, within MPMX20_01532 at 1602.972 kb on - strand, within MPMX20_01532 at 1603.024 kb on - strand at 1603.060 kb on - strand at 1603.076 kb on - strand at 1603.090 kb on + strand at 1603.098 kb on - strand at 1603.109 kb on - strand at 1603.186 kb on + strand at 1603.438 kb on + strand, within MPMX20_01533 at 1603.446 kb on - strand, within MPMX20_01533 at 1603.446 kb on - strand, within MPMX20_01533 at 1603.487 kb on + strand, within MPMX20_01533 at 1603.558 kb on + strand, within MPMX20_01533 at 1603.609 kb on + strand, within MPMX20_01533 at 1603.609 kb on + strand, within MPMX20_01533 at 1603.637 kb on + strand, within MPMX20_01533 at 1603.637 kb on + strand, within MPMX20_01533 at 1603.637 kb on + strand, within MPMX20_01533 at 1603.744 kb on - strand at 1603.751 kb on + strand at 1603.818 kb on + strand at 1603.866 kb on + strand at 1603.883 kb on + strand at 1603.888 kb on + strand, within MPMX20_01534 at 1603.895 kb on + strand, within MPMX20_01534 at 1603.929 kb on + strand, within MPMX20_01534 at 1603.937 kb on - strand, within MPMX20_01534 at 1603.976 kb on + strand, within MPMX20_01534 at 1603.976 kb on + strand, within MPMX20_01534 at 1603.999 kb on - strand, within MPMX20_01534 at 1603.999 kb on - strand, within MPMX20_01534 at 1603.999 kb on - strand, within MPMX20_01534 at 1604.019 kb on - strand, within MPMX20_01534 at 1604.124 kb on + strand, within MPMX20_01534 at 1604.202 kb on + strand, within MPMX20_01534 at 1604.209 kb on + strand, within MPMX20_01534 at 1604.210 kb on - strand, within MPMX20_01534 at 1604.217 kb on - strand, within MPMX20_01534 at 1604.217 kb on - strand, within MPMX20_01534 at 1604.240 kb on + strand, within MPMX20_01534 at 1604.301 kb on - strand, within MPMX20_01534 at 1604.443 kb on + strand, within MPMX20_01534 at 1604.517 kb on - strand, within MPMX20_01534 at 1604.571 kb on + strand, within MPMX20_01534 at 1604.626 kb on - strand, within MPMX20_01534 at 1604.631 kb on - strand, within MPMX20_01534 at 1604.632 kb on + strand, within MPMX20_01534 at 1604.640 kb on - strand, within MPMX20_01534 at 1604.640 kb on - strand, within MPMX20_01534 at 1604.645 kb on - strand, within MPMX20_01534 at 1604.650 kb on - strand, within MPMX20_01534 at 1604.659 kb on - strand, within MPMX20_01534 at 1604.761 kb on - strand at 1604.772 kb on - strand at 1604.883 kb on - strand at 1604.894 kb on - strand at 1604.910 kb on - strand at 1604.910 kb on - strand at 1604.949 kb on + strand, within MPMX20_01535 at 1604.949 kb on + strand, within MPMX20_01535 at 1605.042 kb on + strand, within MPMX20_01535 at 1605.042 kb on + strand, within MPMX20_01535 at 1605.042 kb on + strand, within MPMX20_01535 at 1605.042 kb on + strand, within MPMX20_01535 at 1605.050 kb on - strand, within MPMX20_01535 at 1605.050 kb on - strand, within MPMX20_01535 at 1605.050 kb on - strand, within MPMX20_01535 at 1605.060 kb on - strand, within MPMX20_01535 at 1605.065 kb on - strand, within MPMX20_01535 at 1605.078 kb on + strand, within MPMX20_01535 at 1605.078 kb on + strand, within MPMX20_01535 at 1605.086 kb on - strand, within MPMX20_01535 at 1605.283 kb on + strand, within MPMX20_01535 at 1605.283 kb on + strand, within MPMX20_01535 at 1605.308 kb on + strand, within MPMX20_01535 at 1605.368 kb on - strand, within MPMX20_01535 at 1605.395 kb on + strand, within MPMX20_01535 at 1605.395 kb on + strand, within MPMX20_01535 at 1605.395 kb on + strand, within MPMX20_01535 at 1605.425 kb on + strand, within MPMX20_01535 at 1605.437 kb on + strand, within MPMX20_01535 at 1605.472 kb on + strand, within MPMX20_01535 at 1605.473 kb on + strand, within MPMX20_01535 at 1605.480 kb on - strand, within MPMX20_01535 at 1605.574 kb on + strand, within MPMX20_01535 at 1605.574 kb on + strand, within MPMX20_01535 at 1605.574 kb on + strand, within MPMX20_01535 at 1605.574 kb on + strand, within MPMX20_01535 at 1605.574 kb on + strand, within MPMX20_01535 at 1605.574 kb on + strand, within MPMX20_01535 at 1605.582 kb on - strand, within MPMX20_01535 at 1605.582 kb on - strand, within MPMX20_01535 at 1605.582 kb on - strand, within MPMX20_01535 at 1605.610 kb on + strand, within MPMX20_01535 at 1605.618 kb on - strand, within MPMX20_01535 at 1605.620 kb on - strand, within MPMX20_01535 at 1605.620 kb on - strand, within MPMX20_01535 at 1605.670 kb on + strand, within MPMX20_01535 at 1605.722 kb on - strand, within MPMX20_01535 at 1605.722 kb on - strand, within MPMX20_01535
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 1,602,808 - MPMX20_01532 0.80 +1.8 1,602,905 - MPMX20_01532 0.85 -2.2 1,602,905 - MPMX20_01532 0.85 -0.9 1,602,917 + MPMX20_01532 0.86 -2.4 1,602,932 + MPMX20_01532 0.87 +1.0 1,602,941 + MPMX20_01532 0.87 +2.7 1,602,964 + MPMX20_01532 0.89 -1.7 1,602,972 - MPMX20_01532 0.89 -0.6 1,602,972 - MPMX20_01532 0.89 +0.5 1,603,024 - -0.3 1,603,060 - +0.1 1,603,076 - +3.7 1,603,090 + +0.4 1,603,098 - +0.6 1,603,109 - +2.3 1,603,186 + -0.7 1,603,438 + MPMX20_01533 0.30 -1.3 1,603,446 - MPMX20_01533 0.31 +1.5 1,603,446 - MPMX20_01533 0.31 -3.3 1,603,487 + MPMX20_01533 0.41 +1.6 1,603,558 + MPMX20_01533 0.57 -2.8 1,603,609 + MPMX20_01533 0.69 -0.7 1,603,609 + MPMX20_01533 0.69 +0.2 1,603,637 + MPMX20_01533 0.75 -1.3 1,603,637 + MPMX20_01533 0.75 +1.2 1,603,637 + MPMX20_01533 0.75 -2.2 1,603,744 - -1.7 1,603,751 + +0.1 1,603,818 + -0.9 1,603,866 + +1.2 1,603,883 + -4.2 1,603,888 + MPMX20_01534 0.10 +0.6 1,603,895 + MPMX20_01534 0.11 -0.9 1,603,929 + MPMX20_01534 0.14 +0.2 1,603,937 - MPMX20_01534 0.15 -1.6 1,603,976 + MPMX20_01534 0.19 +0.4 1,603,976 + MPMX20_01534 0.19 -2.9 1,603,999 - MPMX20_01534 0.22 +2.5 1,603,999 - MPMX20_01534 0.22 +0.3 1,603,999 - MPMX20_01534 0.22 -3.4 1,604,019 - MPMX20_01534 0.24 +4.4 1,604,124 + MPMX20_01534 0.35 +2.4 1,604,202 + MPMX20_01534 0.43 +1.9 1,604,209 + MPMX20_01534 0.43 +1.7 1,604,210 - MPMX20_01534 0.43 +0.1 1,604,217 - MPMX20_01534 0.44 +0.1 1,604,217 - MPMX20_01534 0.44 +0.6 1,604,240 + MPMX20_01534 0.47 +0.4 1,604,301 - MPMX20_01534 0.53 -1.4 1,604,443 + MPMX20_01534 0.67 +2.9 1,604,517 - MPMX20_01534 0.75 -2.0 1,604,571 + MPMX20_01534 0.81 +0.8 1,604,626 - MPMX20_01534 0.86 +1.4 1,604,631 - MPMX20_01534 0.87 +2.2 1,604,632 + MPMX20_01534 0.87 +1.8 1,604,640 - MPMX20_01534 0.88 +1.8 1,604,640 - MPMX20_01534 0.88 +1.5 1,604,645 - MPMX20_01534 0.88 -1.8 1,604,650 - MPMX20_01534 0.89 +1.1 1,604,659 - MPMX20_01534 0.90 +1.4 1,604,761 - -2.0 1,604,772 - +1.4 1,604,883 - +1.4 1,604,894 - -3.0 1,604,910 - +2.0 1,604,910 - +0.4 1,604,949 + MPMX20_01535 0.11 -1.5 1,604,949 + MPMX20_01535 0.11 +0.5 1,605,042 + MPMX20_01535 0.17 -2.8 1,605,042 + MPMX20_01535 0.17 -0.2 1,605,042 + MPMX20_01535 0.17 +0.1 1,605,042 + MPMX20_01535 0.17 -1.5 1,605,050 - MPMX20_01535 0.17 +0.5 1,605,050 - MPMX20_01535 0.17 -0.6 1,605,050 - MPMX20_01535 0.17 +0.4 1,605,060 - MPMX20_01535 0.18 -4.0 1,605,065 - MPMX20_01535 0.18 -3.3 1,605,078 + MPMX20_01535 0.19 +2.3 1,605,078 + MPMX20_01535 0.19 +1.5 1,605,086 - MPMX20_01535 0.19 -0.0 1,605,283 + MPMX20_01535 0.31 +2.8 1,605,283 + MPMX20_01535 0.31 +1.6 1,605,308 + MPMX20_01535 0.33 -3.1 1,605,368 - MPMX20_01535 0.36 +1.0 1,605,395 + MPMX20_01535 0.38 -1.9 1,605,395 + MPMX20_01535 0.38 -1.0 1,605,395 + MPMX20_01535 0.38 -1.4 1,605,425 + MPMX20_01535 0.40 +0.9 1,605,437 + MPMX20_01535 0.40 -2.8 1,605,472 + MPMX20_01535 0.43 +0.8 1,605,473 + MPMX20_01535 0.43 +0.4 1,605,480 - MPMX20_01535 0.43 +0.1 1,605,574 + MPMX20_01535 0.49 +0.2 1,605,574 + MPMX20_01535 0.49 -2.6 1,605,574 + MPMX20_01535 0.49 -0.9 1,605,574 + MPMX20_01535 0.49 -0.9 1,605,574 + MPMX20_01535 0.49 +1.5 1,605,574 + MPMX20_01535 0.49 -2.5 1,605,582 - MPMX20_01535 0.49 -2.3 1,605,582 - MPMX20_01535 0.49 -2.3 1,605,582 - MPMX20_01535 0.49 +3.3 1,605,610 + MPMX20_01535 0.51 +0.1 1,605,618 - MPMX20_01535 0.51 +0.8 1,605,620 - MPMX20_01535 0.52 +0.3 1,605,620 - MPMX20_01535 0.52 +2.9 1,605,670 + MPMX20_01535 0.55 -0.9 1,605,722 - MPMX20_01535 0.58 +1.2 1,605,722 - MPMX20_01535 0.58 +0.4
Or see this region's nucleotide sequence