Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01534

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01532 and MPMX20_01533 are separated by 151 nucleotidesMPMX20_01533 and MPMX20_01534 are separated by 45 nucleotidesMPMX20_01534 and MPMX20_01535 are separated by 10 nucleotides MPMX20_01532: MPMX20_01532 - Pyruvate dehydrogenase [ubiquinone], at 1,601,439 to 1,603,157 _01532 MPMX20_01533: MPMX20_01533 - hypothetical protein, at 1,603,309 to 1,603,743 _01533 MPMX20_01534: MPMX20_01534 - NADH oxidoreductase HCR, at 1,603,789 to 1,604,757 _01534 MPMX20_01535: MPMX20_01535 - Hydroxylamine reductase, at 1,604,768 to 1,606,420 _01535 Position (kb) 1603 1604 1605Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1602.808 kb on - strand, within MPMX20_01532at 1602.905 kb on - strand, within MPMX20_01532at 1602.905 kb on - strand, within MPMX20_01532at 1602.917 kb on + strand, within MPMX20_01532at 1602.932 kb on + strand, within MPMX20_01532at 1602.941 kb on + strand, within MPMX20_01532at 1602.964 kb on + strand, within MPMX20_01532at 1602.972 kb on - strand, within MPMX20_01532at 1602.972 kb on - strand, within MPMX20_01532at 1603.024 kb on - strandat 1603.060 kb on - strandat 1603.076 kb on - strandat 1603.090 kb on + strandat 1603.098 kb on - strandat 1603.109 kb on - strandat 1603.186 kb on + strandat 1603.438 kb on + strand, within MPMX20_01533at 1603.446 kb on - strand, within MPMX20_01533at 1603.446 kb on - strand, within MPMX20_01533at 1603.487 kb on + strand, within MPMX20_01533at 1603.558 kb on + strand, within MPMX20_01533at 1603.609 kb on + strand, within MPMX20_01533at 1603.609 kb on + strand, within MPMX20_01533at 1603.637 kb on + strand, within MPMX20_01533at 1603.637 kb on + strand, within MPMX20_01533at 1603.637 kb on + strand, within MPMX20_01533at 1603.744 kb on - strandat 1603.751 kb on + strandat 1603.818 kb on + strandat 1603.866 kb on + strandat 1603.883 kb on + strandat 1603.888 kb on + strand, within MPMX20_01534at 1603.895 kb on + strand, within MPMX20_01534at 1603.929 kb on + strand, within MPMX20_01534at 1603.937 kb on - strand, within MPMX20_01534at 1603.976 kb on + strand, within MPMX20_01534at 1603.976 kb on + strand, within MPMX20_01534at 1603.999 kb on - strand, within MPMX20_01534at 1603.999 kb on - strand, within MPMX20_01534at 1603.999 kb on - strand, within MPMX20_01534at 1604.019 kb on - strand, within MPMX20_01534at 1604.124 kb on + strand, within MPMX20_01534at 1604.202 kb on + strand, within MPMX20_01534at 1604.209 kb on + strand, within MPMX20_01534at 1604.210 kb on - strand, within MPMX20_01534at 1604.217 kb on - strand, within MPMX20_01534at 1604.217 kb on - strand, within MPMX20_01534at 1604.240 kb on + strand, within MPMX20_01534at 1604.301 kb on - strand, within MPMX20_01534at 1604.443 kb on + strand, within MPMX20_01534at 1604.517 kb on - strand, within MPMX20_01534at 1604.571 kb on + strand, within MPMX20_01534at 1604.626 kb on - strand, within MPMX20_01534at 1604.631 kb on - strand, within MPMX20_01534at 1604.632 kb on + strand, within MPMX20_01534at 1604.640 kb on - strand, within MPMX20_01534at 1604.640 kb on - strand, within MPMX20_01534at 1604.645 kb on - strand, within MPMX20_01534at 1604.650 kb on - strand, within MPMX20_01534at 1604.659 kb on - strand, within MPMX20_01534at 1604.761 kb on - strandat 1604.772 kb on - strandat 1604.883 kb on - strandat 1604.894 kb on - strandat 1604.910 kb on - strandat 1604.910 kb on - strandat 1604.949 kb on + strand, within MPMX20_01535at 1604.949 kb on + strand, within MPMX20_01535at 1605.042 kb on + strand, within MPMX20_01535at 1605.042 kb on + strand, within MPMX20_01535at 1605.042 kb on + strand, within MPMX20_01535at 1605.042 kb on + strand, within MPMX20_01535at 1605.050 kb on - strand, within MPMX20_01535at 1605.050 kb on - strand, within MPMX20_01535at 1605.050 kb on - strand, within MPMX20_01535at 1605.060 kb on - strand, within MPMX20_01535at 1605.065 kb on - strand, within MPMX20_01535at 1605.078 kb on + strand, within MPMX20_01535at 1605.078 kb on + strand, within MPMX20_01535at 1605.086 kb on - strand, within MPMX20_01535at 1605.283 kb on + strand, within MPMX20_01535at 1605.283 kb on + strand, within MPMX20_01535at 1605.308 kb on + strand, within MPMX20_01535at 1605.368 kb on - strand, within MPMX20_01535at 1605.395 kb on + strand, within MPMX20_01535at 1605.395 kb on + strand, within MPMX20_01535at 1605.395 kb on + strand, within MPMX20_01535at 1605.425 kb on + strand, within MPMX20_01535at 1605.437 kb on + strand, within MPMX20_01535at 1605.472 kb on + strand, within MPMX20_01535at 1605.473 kb on + strand, within MPMX20_01535at 1605.480 kb on - strand, within MPMX20_01535at 1605.574 kb on + strand, within MPMX20_01535at 1605.574 kb on + strand, within MPMX20_01535at 1605.574 kb on + strand, within MPMX20_01535at 1605.574 kb on + strand, within MPMX20_01535at 1605.574 kb on + strand, within MPMX20_01535at 1605.574 kb on + strand, within MPMX20_01535at 1605.582 kb on - strand, within MPMX20_01535at 1605.582 kb on - strand, within MPMX20_01535at 1605.582 kb on - strand, within MPMX20_01535at 1605.610 kb on + strand, within MPMX20_01535at 1605.618 kb on - strand, within MPMX20_01535at 1605.620 kb on - strand, within MPMX20_01535at 1605.620 kb on - strand, within MPMX20_01535at 1605.670 kb on + strand, within MPMX20_01535at 1605.722 kb on - strand, within MPMX20_01535at 1605.722 kb on - strand, within MPMX20_01535

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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1,602,808 - MPMX20_01532 0.80 +1.8
1,602,905 - MPMX20_01532 0.85 -2.2
1,602,905 - MPMX20_01532 0.85 -0.9
1,602,917 + MPMX20_01532 0.86 -2.4
1,602,932 + MPMX20_01532 0.87 +1.0
1,602,941 + MPMX20_01532 0.87 +2.7
1,602,964 + MPMX20_01532 0.89 -1.7
1,602,972 - MPMX20_01532 0.89 -0.6
1,602,972 - MPMX20_01532 0.89 +0.5
1,603,024 - -0.3
1,603,060 - +0.1
1,603,076 - +3.7
1,603,090 + +0.4
1,603,098 - +0.6
1,603,109 - +2.3
1,603,186 + -0.7
1,603,438 + MPMX20_01533 0.30 -1.3
1,603,446 - MPMX20_01533 0.31 +1.5
1,603,446 - MPMX20_01533 0.31 -3.3
1,603,487 + MPMX20_01533 0.41 +1.6
1,603,558 + MPMX20_01533 0.57 -2.8
1,603,609 + MPMX20_01533 0.69 -0.7
1,603,609 + MPMX20_01533 0.69 +0.2
1,603,637 + MPMX20_01533 0.75 -1.3
1,603,637 + MPMX20_01533 0.75 +1.2
1,603,637 + MPMX20_01533 0.75 -2.2
1,603,744 - -1.7
1,603,751 + +0.1
1,603,818 + -0.9
1,603,866 + +1.2
1,603,883 + -4.2
1,603,888 + MPMX20_01534 0.10 +0.6
1,603,895 + MPMX20_01534 0.11 -0.9
1,603,929 + MPMX20_01534 0.14 +0.2
1,603,937 - MPMX20_01534 0.15 -1.6
1,603,976 + MPMX20_01534 0.19 +0.4
1,603,976 + MPMX20_01534 0.19 -2.9
1,603,999 - MPMX20_01534 0.22 +2.5
1,603,999 - MPMX20_01534 0.22 +0.3
1,603,999 - MPMX20_01534 0.22 -3.4
1,604,019 - MPMX20_01534 0.24 +4.4
1,604,124 + MPMX20_01534 0.35 +2.4
1,604,202 + MPMX20_01534 0.43 +1.9
1,604,209 + MPMX20_01534 0.43 +1.7
1,604,210 - MPMX20_01534 0.43 +0.1
1,604,217 - MPMX20_01534 0.44 +0.1
1,604,217 - MPMX20_01534 0.44 +0.6
1,604,240 + MPMX20_01534 0.47 +0.4
1,604,301 - MPMX20_01534 0.53 -1.4
1,604,443 + MPMX20_01534 0.67 +2.9
1,604,517 - MPMX20_01534 0.75 -2.0
1,604,571 + MPMX20_01534 0.81 +0.8
1,604,626 - MPMX20_01534 0.86 +1.4
1,604,631 - MPMX20_01534 0.87 +2.2
1,604,632 + MPMX20_01534 0.87 +1.8
1,604,640 - MPMX20_01534 0.88 +1.8
1,604,640 - MPMX20_01534 0.88 +1.5
1,604,645 - MPMX20_01534 0.88 -1.8
1,604,650 - MPMX20_01534 0.89 +1.1
1,604,659 - MPMX20_01534 0.90 +1.4
1,604,761 - -2.0
1,604,772 - +1.4
1,604,883 - +1.4
1,604,894 - -3.0
1,604,910 - +2.0
1,604,910 - +0.4
1,604,949 + MPMX20_01535 0.11 -1.5
1,604,949 + MPMX20_01535 0.11 +0.5
1,605,042 + MPMX20_01535 0.17 -2.8
1,605,042 + MPMX20_01535 0.17 -0.2
1,605,042 + MPMX20_01535 0.17 +0.1
1,605,042 + MPMX20_01535 0.17 -1.5
1,605,050 - MPMX20_01535 0.17 +0.5
1,605,050 - MPMX20_01535 0.17 -0.6
1,605,050 - MPMX20_01535 0.17 +0.4
1,605,060 - MPMX20_01535 0.18 -4.0
1,605,065 - MPMX20_01535 0.18 -3.3
1,605,078 + MPMX20_01535 0.19 +2.3
1,605,078 + MPMX20_01535 0.19 +1.5
1,605,086 - MPMX20_01535 0.19 -0.0
1,605,283 + MPMX20_01535 0.31 +2.8
1,605,283 + MPMX20_01535 0.31 +1.6
1,605,308 + MPMX20_01535 0.33 -3.1
1,605,368 - MPMX20_01535 0.36 +1.0
1,605,395 + MPMX20_01535 0.38 -1.9
1,605,395 + MPMX20_01535 0.38 -1.0
1,605,395 + MPMX20_01535 0.38 -1.4
1,605,425 + MPMX20_01535 0.40 +0.9
1,605,437 + MPMX20_01535 0.40 -2.8
1,605,472 + MPMX20_01535 0.43 +0.8
1,605,473 + MPMX20_01535 0.43 +0.4
1,605,480 - MPMX20_01535 0.43 +0.1
1,605,574 + MPMX20_01535 0.49 +0.2
1,605,574 + MPMX20_01535 0.49 -2.6
1,605,574 + MPMX20_01535 0.49 -0.9
1,605,574 + MPMX20_01535 0.49 -0.9
1,605,574 + MPMX20_01535 0.49 +1.5
1,605,574 + MPMX20_01535 0.49 -2.5
1,605,582 - MPMX20_01535 0.49 -2.3
1,605,582 - MPMX20_01535 0.49 -2.3
1,605,582 - MPMX20_01535 0.49 +3.3
1,605,610 + MPMX20_01535 0.51 +0.1
1,605,618 - MPMX20_01535 0.51 +0.8
1,605,620 - MPMX20_01535 0.52 +0.3
1,605,620 - MPMX20_01535 0.52 +2.9
1,605,670 + MPMX20_01535 0.55 -0.9
1,605,722 - MPMX20_01535 0.58 +1.2
1,605,722 - MPMX20_01535 0.58 +0.4

Or see this region's nucleotide sequence