Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01488

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01487 and MPMX20_01488 are separated by 36 nucleotidesMPMX20_01488 and MPMX20_01489 are separated by 250 nucleotides MPMX20_01487: MPMX20_01487 - Arsenical pump membrane protein, at 1,556,933 to 1,558,222 _01487 MPMX20_01488: MPMX20_01488 - hypothetical protein, at 1,558,259 to 1,558,579 _01488 MPMX20_01489: MPMX20_01489 - Aspartate/alanine antiporter, at 1,558,830 to 1,560,515 _01489 Position (kb) 1558 1559Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1557.260 kb on - strand, within MPMX20_01487at 1557.277 kb on - strand, within MPMX20_01487at 1557.304 kb on - strand, within MPMX20_01487at 1557.322 kb on + strand, within MPMX20_01487at 1557.335 kb on - strand, within MPMX20_01487at 1557.335 kb on - strand, within MPMX20_01487at 1557.335 kb on - strand, within MPMX20_01487at 1557.337 kb on + strand, within MPMX20_01487at 1557.346 kb on + strand, within MPMX20_01487at 1557.346 kb on - strand, within MPMX20_01487at 1557.471 kb on - strand, within MPMX20_01487at 1557.481 kb on + strand, within MPMX20_01487at 1557.554 kb on - strand, within MPMX20_01487at 1557.600 kb on - strand, within MPMX20_01487at 1557.683 kb on + strand, within MPMX20_01487at 1557.703 kb on + strand, within MPMX20_01487at 1557.712 kb on - strand, within MPMX20_01487at 1557.748 kb on + strand, within MPMX20_01487at 1557.748 kb on + strand, within MPMX20_01487at 1557.777 kb on - strand, within MPMX20_01487at 1557.958 kb on - strand, within MPMX20_01487at 1557.969 kb on - strand, within MPMX20_01487at 1558.070 kb on + strand, within MPMX20_01487at 1558.115 kb on - strandat 1558.115 kb on - strandat 1558.123 kb on + strandat 1558.128 kb on + strandat 1558.154 kb on + strandat 1558.179 kb on + strandat 1558.183 kb on + strandat 1558.298 kb on + strand, within MPMX20_01488at 1558.306 kb on - strand, within MPMX20_01488at 1558.454 kb on - strand, within MPMX20_01488at 1558.454 kb on - strand, within MPMX20_01488at 1558.511 kb on - strand, within MPMX20_01488at 1558.614 kb on + strandat 1558.709 kb on + strandat 1558.821 kb on + strandat 1558.821 kb on + strandat 1558.829 kb on - strandat 1558.829 kb on - strandat 1558.829 kb on - strandat 1558.838 kb on + strandat 1558.914 kb on + strandat 1558.917 kb on - strandat 1558.917 kb on - strandat 1558.922 kb on - strandat 1558.922 kb on - strandat 1559.035 kb on - strand, within MPMX20_01489at 1559.171 kb on + strand, within MPMX20_01489at 1559.179 kb on - strand, within MPMX20_01489at 1559.270 kb on + strand, within MPMX20_01489at 1559.440 kb on + strand, within MPMX20_01489at 1559.469 kb on - strand, within MPMX20_01489at 1559.469 kb on - strand, within MPMX20_01489at 1559.474 kb on - strand, within MPMX20_01489

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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1,557,260 - MPMX20_01487 0.25 +0.9
1,557,277 - MPMX20_01487 0.27 +1.0
1,557,304 - MPMX20_01487 0.29 +1.7
1,557,322 + MPMX20_01487 0.30 +3.1
1,557,335 - MPMX20_01487 0.31 -0.2
1,557,335 - MPMX20_01487 0.31 -0.1
1,557,335 - MPMX20_01487 0.31 +1.4
1,557,337 + MPMX20_01487 0.31 -3.3
1,557,346 + MPMX20_01487 0.32 +2.6
1,557,346 - MPMX20_01487 0.32 +1.4
1,557,471 - MPMX20_01487 0.42 -0.7
1,557,481 + MPMX20_01487 0.42 +1.8
1,557,554 - MPMX20_01487 0.48 -2.7
1,557,600 - MPMX20_01487 0.52 -3.2
1,557,683 + MPMX20_01487 0.58 -1.0
1,557,703 + MPMX20_01487 0.60 -0.9
1,557,712 - MPMX20_01487 0.60 -4.7
1,557,748 + MPMX20_01487 0.63 +0.6
1,557,748 + MPMX20_01487 0.63 +2.2
1,557,777 - MPMX20_01487 0.65 +1.5
1,557,958 - MPMX20_01487 0.79 -1.1
1,557,969 - MPMX20_01487 0.80 -0.2
1,558,070 + MPMX20_01487 0.88 +0.1
1,558,115 - -2.0
1,558,115 - -1.7
1,558,123 + -0.5
1,558,128 + -2.5
1,558,154 + +0.4
1,558,179 + +0.0
1,558,183 + -1.0
1,558,298 + MPMX20_01488 0.12 -2.1
1,558,306 - MPMX20_01488 0.15 -0.6
1,558,454 - MPMX20_01488 0.61 +0.1
1,558,454 - MPMX20_01488 0.61 -2.8
1,558,511 - MPMX20_01488 0.79 +3.3
1,558,614 + +0.1
1,558,709 + -0.1
1,558,821 + -3.8
1,558,821 + -2.7
1,558,829 - -0.6
1,558,829 - -2.4
1,558,829 - +0.3
1,558,838 + +0.9
1,558,914 + +1.0
1,558,917 - -1.9
1,558,917 - -2.7
1,558,922 - +0.1
1,558,922 - -0.9
1,559,035 - MPMX20_01489 0.12 -2.4
1,559,171 + MPMX20_01489 0.20 +1.7
1,559,179 - MPMX20_01489 0.21 -3.3
1,559,270 + MPMX20_01489 0.26 +1.4
1,559,440 + MPMX20_01489 0.36 -2.6
1,559,469 - MPMX20_01489 0.38 +0.9
1,559,469 - MPMX20_01489 0.38 +1.4
1,559,474 - MPMX20_01489 0.38 -2.2

Or see this region's nucleotide sequence