Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01474

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01473 and MPMX20_01474 are separated by 216 nucleotidesMPMX20_01474 and MPMX20_01475 are separated by 106 nucleotides MPMX20_01473: MPMX20_01473 - Ribosomal protein S12 methylthiotransferase RimO, at 1,544,044 to 1,545,369 _01473 MPMX20_01474: MPMX20_01474 - hypothetical protein, at 1,545,586 to 1,545,969 _01474 MPMX20_01475: MPMX20_01475 - Aldose sugar dehydrogenase YliI, at 1,546,076 to 1,547,194 _01475 Position (kb) 1545 1546Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1544.633 kb on + strand, within MPMX20_01473at 1544.740 kb on + strand, within MPMX20_01473at 1544.806 kb on - strand, within MPMX20_01473at 1544.816 kb on - strand, within MPMX20_01473at 1544.825 kb on + strand, within MPMX20_01473at 1544.842 kb on + strand, within MPMX20_01473at 1544.856 kb on - strand, within MPMX20_01473at 1544.892 kb on + strand, within MPMX20_01473at 1544.892 kb on + strand, within MPMX20_01473at 1544.900 kb on - strand, within MPMX20_01473at 1544.906 kb on + strand, within MPMX20_01473at 1544.914 kb on - strand, within MPMX20_01473at 1545.006 kb on + strand, within MPMX20_01473at 1545.011 kb on + strand, within MPMX20_01473at 1545.048 kb on + strand, within MPMX20_01473at 1545.181 kb on - strand, within MPMX20_01473at 1545.184 kb on + strand, within MPMX20_01473at 1545.184 kb on + strand, within MPMX20_01473at 1545.184 kb on + strand, within MPMX20_01473at 1545.192 kb on - strand, within MPMX20_01473at 1545.192 kb on - strand, within MPMX20_01473at 1545.192 kb on - strand, within MPMX20_01473at 1545.192 kb on - strand, within MPMX20_01473at 1545.192 kb on - strand, within MPMX20_01473at 1545.192 kb on - strand, within MPMX20_01473at 1545.192 kb on - strand, within MPMX20_01473at 1545.192 kb on - strand, within MPMX20_01473at 1545.207 kb on + strand, within MPMX20_01473at 1545.215 kb on - strand, within MPMX20_01473at 1545.215 kb on - strand, within MPMX20_01473at 1545.241 kb on + strandat 1545.292 kb on - strandat 1545.577 kb on + strandat 1545.679 kb on + strand, within MPMX20_01474at 1545.681 kb on + strand, within MPMX20_01474at 1545.688 kb on - strand, within MPMX20_01474at 1545.689 kb on - strand, within MPMX20_01474at 1545.796 kb on + strand, within MPMX20_01474at 1545.801 kb on + strand, within MPMX20_01474at 1545.824 kb on + strand, within MPMX20_01474at 1545.861 kb on - strand, within MPMX20_01474at 1545.961 kb on - strandat 1545.978 kb on - strandat 1545.990 kb on - strandat 1546.045 kb on - strandat 1546.051 kb on - strandat 1546.051 kb on - strandat 1546.067 kb on - strandat 1546.183 kb on + strandat 1546.222 kb on + strand, within MPMX20_01475at 1546.230 kb on + strand, within MPMX20_01475at 1546.230 kb on + strand, within MPMX20_01475at 1546.238 kb on - strand, within MPMX20_01475at 1546.238 kb on - strand, within MPMX20_01475at 1546.239 kb on - strand, within MPMX20_01475at 1546.239 kb on - strand, within MPMX20_01475at 1546.306 kb on - strand, within MPMX20_01475at 1546.306 kb on - strand, within MPMX20_01475at 1546.324 kb on - strand, within MPMX20_01475at 1546.394 kb on - strand, within MPMX20_01475at 1546.435 kb on - strand, within MPMX20_01475at 1546.499 kb on - strand, within MPMX20_01475at 1546.563 kb on + strand, within MPMX20_01475at 1546.615 kb on + strand, within MPMX20_01475at 1546.623 kb on - strand, within MPMX20_01475at 1546.749 kb on - strand, within MPMX20_01475at 1546.763 kb on - strand, within MPMX20_01475at 1546.769 kb on - strand, within MPMX20_01475at 1546.795 kb on + strand, within MPMX20_01475at 1546.860 kb on - strand, within MPMX20_01475at 1546.880 kb on + strand, within MPMX20_01475at 1546.894 kb on + strand, within MPMX20_01475at 1546.902 kb on - strand, within MPMX20_01475at 1546.965 kb on + strand, within MPMX20_01475

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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1,544,633 + MPMX20_01473 0.44 -3.3
1,544,740 + MPMX20_01473 0.52 -1.9
1,544,806 - MPMX20_01473 0.57 +2.2
1,544,816 - MPMX20_01473 0.58 -1.4
1,544,825 + MPMX20_01473 0.59 -1.1
1,544,842 + MPMX20_01473 0.60 +2.6
1,544,856 - MPMX20_01473 0.61 +1.3
1,544,892 + MPMX20_01473 0.64 -2.1
1,544,892 + MPMX20_01473 0.64 +1.1
1,544,900 - MPMX20_01473 0.65 -1.7
1,544,906 + MPMX20_01473 0.65 -2.7
1,544,914 - MPMX20_01473 0.66 -1.8
1,545,006 + MPMX20_01473 0.73 -0.4
1,545,011 + MPMX20_01473 0.73 -2.6
1,545,048 + MPMX20_01473 0.76 +0.1
1,545,181 - MPMX20_01473 0.86 -3.4
1,545,184 + MPMX20_01473 0.86 +1.8
1,545,184 + MPMX20_01473 0.86 +0.8
1,545,184 + MPMX20_01473 0.86 -0.3
1,545,192 - MPMX20_01473 0.87 +0.1
1,545,192 - MPMX20_01473 0.87 +1.3
1,545,192 - MPMX20_01473 0.87 -2.7
1,545,192 - MPMX20_01473 0.87 -0.7
1,545,192 - MPMX20_01473 0.87 -2.5
1,545,192 - MPMX20_01473 0.87 +0.4
1,545,192 - MPMX20_01473 0.87 -2.5
1,545,192 - MPMX20_01473 0.87 +0.6
1,545,207 + MPMX20_01473 0.88 -2.5
1,545,215 - MPMX20_01473 0.88 -1.1
1,545,215 - MPMX20_01473 0.88 +1.4
1,545,241 + +0.9
1,545,292 - +0.7
1,545,577 + +1.6
1,545,679 + MPMX20_01474 0.24 -0.5
1,545,681 + MPMX20_01474 0.25 -0.4
1,545,688 - MPMX20_01474 0.27 -1.7
1,545,689 - MPMX20_01474 0.27 +1.2
1,545,796 + MPMX20_01474 0.55 -0.4
1,545,801 + MPMX20_01474 0.56 +4.0
1,545,824 + MPMX20_01474 0.62 +1.6
1,545,861 - MPMX20_01474 0.72 +1.5
1,545,961 - +1.6
1,545,978 - -3.0
1,545,990 - -1.6
1,546,045 - +0.1
1,546,051 - -0.5
1,546,051 - +2.2
1,546,067 - -1.4
1,546,183 + +2.2
1,546,222 + MPMX20_01475 0.13 +0.9
1,546,230 + MPMX20_01475 0.14 -1.9
1,546,230 + MPMX20_01475 0.14 +1.0
1,546,238 - MPMX20_01475 0.14 -3.4
1,546,238 - MPMX20_01475 0.14 +0.1
1,546,239 - MPMX20_01475 0.15 +1.4
1,546,239 - MPMX20_01475 0.15 +4.0
1,546,306 - MPMX20_01475 0.21 -1.6
1,546,306 - MPMX20_01475 0.21 +0.4
1,546,324 - MPMX20_01475 0.22 +3.4
1,546,394 - MPMX20_01475 0.28 -1.5
1,546,435 - MPMX20_01475 0.32 -2.9
1,546,499 - MPMX20_01475 0.38 +1.6
1,546,563 + MPMX20_01475 0.44 +1.4
1,546,615 + MPMX20_01475 0.48 -1.9
1,546,623 - MPMX20_01475 0.49 +0.4
1,546,749 - MPMX20_01475 0.60 -1.6
1,546,763 - MPMX20_01475 0.61 -2.5
1,546,769 - MPMX20_01475 0.62 -2.2
1,546,795 + MPMX20_01475 0.64 -1.6
1,546,860 - MPMX20_01475 0.70 +0.3
1,546,880 + MPMX20_01475 0.72 -2.5
1,546,894 + MPMX20_01475 0.73 -1.4
1,546,902 - MPMX20_01475 0.74 +1.2
1,546,965 + MPMX20_01475 0.79 -1.3

Or see this region's nucleotide sequence