Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01473 and MPMX20_01474 are separated by 216 nucleotides MPMX20_01474 and MPMX20_01475 are separated by 106 nucleotides
MPMX20_01473: MPMX20_01473 - Ribosomal protein S12 methylthiotransferase RimO, at 1,544,044 to 1,545,369
_01473
MPMX20_01474: MPMX20_01474 - hypothetical protein, at 1,545,586 to 1,545,969
_01474
MPMX20_01475: MPMX20_01475 - Aldose sugar dehydrogenase YliI, at 1,546,076 to 1,547,194
_01475
Position (kb)
1545
1546 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1544.633 kb on + strand, within MPMX20_01473 at 1544.740 kb on + strand, within MPMX20_01473 at 1544.806 kb on - strand, within MPMX20_01473 at 1544.816 kb on - strand, within MPMX20_01473 at 1544.825 kb on + strand, within MPMX20_01473 at 1544.842 kb on + strand, within MPMX20_01473 at 1544.856 kb on - strand, within MPMX20_01473 at 1544.892 kb on + strand, within MPMX20_01473 at 1544.892 kb on + strand, within MPMX20_01473 at 1544.900 kb on - strand, within MPMX20_01473 at 1544.906 kb on + strand, within MPMX20_01473 at 1544.914 kb on - strand, within MPMX20_01473 at 1545.006 kb on + strand, within MPMX20_01473 at 1545.011 kb on + strand, within MPMX20_01473 at 1545.048 kb on + strand, within MPMX20_01473 at 1545.181 kb on - strand, within MPMX20_01473 at 1545.184 kb on + strand, within MPMX20_01473 at 1545.184 kb on + strand, within MPMX20_01473 at 1545.184 kb on + strand, within MPMX20_01473 at 1545.192 kb on - strand, within MPMX20_01473 at 1545.192 kb on - strand, within MPMX20_01473 at 1545.192 kb on - strand, within MPMX20_01473 at 1545.192 kb on - strand, within MPMX20_01473 at 1545.192 kb on - strand, within MPMX20_01473 at 1545.192 kb on - strand, within MPMX20_01473 at 1545.192 kb on - strand, within MPMX20_01473 at 1545.192 kb on - strand, within MPMX20_01473 at 1545.207 kb on + strand, within MPMX20_01473 at 1545.215 kb on - strand, within MPMX20_01473 at 1545.215 kb on - strand, within MPMX20_01473 at 1545.241 kb on + strand at 1545.292 kb on - strand at 1545.577 kb on + strand at 1545.679 kb on + strand, within MPMX20_01474 at 1545.681 kb on + strand, within MPMX20_01474 at 1545.688 kb on - strand, within MPMX20_01474 at 1545.689 kb on - strand, within MPMX20_01474 at 1545.796 kb on + strand, within MPMX20_01474 at 1545.801 kb on + strand, within MPMX20_01474 at 1545.824 kb on + strand, within MPMX20_01474 at 1545.861 kb on - strand, within MPMX20_01474 at 1545.961 kb on - strand at 1545.978 kb on - strand at 1545.990 kb on - strand at 1546.045 kb on - strand at 1546.051 kb on - strand at 1546.051 kb on - strand at 1546.067 kb on - strand at 1546.183 kb on + strand at 1546.222 kb on + strand, within MPMX20_01475 at 1546.230 kb on + strand, within MPMX20_01475 at 1546.230 kb on + strand, within MPMX20_01475 at 1546.238 kb on - strand, within MPMX20_01475 at 1546.238 kb on - strand, within MPMX20_01475 at 1546.239 kb on - strand, within MPMX20_01475 at 1546.239 kb on - strand, within MPMX20_01475 at 1546.306 kb on - strand, within MPMX20_01475 at 1546.306 kb on - strand, within MPMX20_01475 at 1546.324 kb on - strand, within MPMX20_01475 at 1546.394 kb on - strand, within MPMX20_01475 at 1546.435 kb on - strand, within MPMX20_01475 at 1546.499 kb on - strand, within MPMX20_01475 at 1546.563 kb on + strand, within MPMX20_01475 at 1546.615 kb on + strand, within MPMX20_01475 at 1546.623 kb on - strand, within MPMX20_01475 at 1546.749 kb on - strand, within MPMX20_01475 at 1546.763 kb on - strand, within MPMX20_01475 at 1546.769 kb on - strand, within MPMX20_01475 at 1546.795 kb on + strand, within MPMX20_01475 at 1546.860 kb on - strand, within MPMX20_01475 at 1546.880 kb on + strand, within MPMX20_01475 at 1546.894 kb on + strand, within MPMX20_01475 at 1546.902 kb on - strand, within MPMX20_01475 at 1546.965 kb on + strand, within MPMX20_01475
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 1,544,633 + MPMX20_01473 0.44 -3.3 1,544,740 + MPMX20_01473 0.52 -1.9 1,544,806 - MPMX20_01473 0.57 +2.2 1,544,816 - MPMX20_01473 0.58 -1.4 1,544,825 + MPMX20_01473 0.59 -1.1 1,544,842 + MPMX20_01473 0.60 +2.6 1,544,856 - MPMX20_01473 0.61 +1.3 1,544,892 + MPMX20_01473 0.64 -2.1 1,544,892 + MPMX20_01473 0.64 +1.1 1,544,900 - MPMX20_01473 0.65 -1.7 1,544,906 + MPMX20_01473 0.65 -2.7 1,544,914 - MPMX20_01473 0.66 -1.8 1,545,006 + MPMX20_01473 0.73 -0.4 1,545,011 + MPMX20_01473 0.73 -2.6 1,545,048 + MPMX20_01473 0.76 +0.1 1,545,181 - MPMX20_01473 0.86 -3.4 1,545,184 + MPMX20_01473 0.86 +1.8 1,545,184 + MPMX20_01473 0.86 +0.8 1,545,184 + MPMX20_01473 0.86 -0.3 1,545,192 - MPMX20_01473 0.87 +0.1 1,545,192 - MPMX20_01473 0.87 +1.3 1,545,192 - MPMX20_01473 0.87 -2.7 1,545,192 - MPMX20_01473 0.87 -0.7 1,545,192 - MPMX20_01473 0.87 -2.5 1,545,192 - MPMX20_01473 0.87 +0.4 1,545,192 - MPMX20_01473 0.87 -2.5 1,545,192 - MPMX20_01473 0.87 +0.6 1,545,207 + MPMX20_01473 0.88 -2.5 1,545,215 - MPMX20_01473 0.88 -1.1 1,545,215 - MPMX20_01473 0.88 +1.4 1,545,241 + +0.9 1,545,292 - +0.7 1,545,577 + +1.6 1,545,679 + MPMX20_01474 0.24 -0.5 1,545,681 + MPMX20_01474 0.25 -0.4 1,545,688 - MPMX20_01474 0.27 -1.7 1,545,689 - MPMX20_01474 0.27 +1.2 1,545,796 + MPMX20_01474 0.55 -0.4 1,545,801 + MPMX20_01474 0.56 +4.0 1,545,824 + MPMX20_01474 0.62 +1.6 1,545,861 - MPMX20_01474 0.72 +1.5 1,545,961 - +1.6 1,545,978 - -3.0 1,545,990 - -1.6 1,546,045 - +0.1 1,546,051 - -0.5 1,546,051 - +2.2 1,546,067 - -1.4 1,546,183 + +2.2 1,546,222 + MPMX20_01475 0.13 +0.9 1,546,230 + MPMX20_01475 0.14 -1.9 1,546,230 + MPMX20_01475 0.14 +1.0 1,546,238 - MPMX20_01475 0.14 -3.4 1,546,238 - MPMX20_01475 0.14 +0.1 1,546,239 - MPMX20_01475 0.15 +1.4 1,546,239 - MPMX20_01475 0.15 +4.0 1,546,306 - MPMX20_01475 0.21 -1.6 1,546,306 - MPMX20_01475 0.21 +0.4 1,546,324 - MPMX20_01475 0.22 +3.4 1,546,394 - MPMX20_01475 0.28 -1.5 1,546,435 - MPMX20_01475 0.32 -2.9 1,546,499 - MPMX20_01475 0.38 +1.6 1,546,563 + MPMX20_01475 0.44 +1.4 1,546,615 + MPMX20_01475 0.48 -1.9 1,546,623 - MPMX20_01475 0.49 +0.4 1,546,749 - MPMX20_01475 0.60 -1.6 1,546,763 - MPMX20_01475 0.61 -2.5 1,546,769 - MPMX20_01475 0.62 -2.2 1,546,795 + MPMX20_01475 0.64 -1.6 1,546,860 - MPMX20_01475 0.70 +0.3 1,546,880 + MPMX20_01475 0.72 -2.5 1,546,894 + MPMX20_01475 0.73 -1.4 1,546,902 - MPMX20_01475 0.74 +1.2 1,546,965 + MPMX20_01475 0.79 -1.3
Or see this region's nucleotide sequence