Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01411 and MPMX20_01412 are separated by 3 nucleotides MPMX20_01412 and MPMX20_01413 overlap by 8 nucleotides MPMX20_01413 and MPMX20_01414 are separated by 1 nucleotides MPMX20_01414 and MPMX20_01415 are separated by 58 nucleotides
MPMX20_01411: MPMX20_01411 - Molybdenum cofactor biosynthesis protein B, at 1,476,075 to 1,476,587
_01411
MPMX20_01412: MPMX20_01412 - Cyclic pyranopterin monophosphate synthase, at 1,476,591 to 1,477,076
_01412
MPMX20_01413: MPMX20_01413 - Molybdopterin synthase sulfur carrier subunit, at 1,477,069 to 1,477,314
_01413
MPMX20_01414: MPMX20_01414 - Molybdopterin synthase catalytic subunit, at 1,477,316 to 1,477,768
_01414
MPMX20_01415: MPMX20_01415 - Inner membrane protein YbhL, at 1,477,827 to 1,478,534
_01415
Position (kb)
1477
1478 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1476.086 kb on - strand at 1476.112 kb on + strand at 1476.117 kb on + strand at 1476.149 kb on + strand, within MPMX20_01411 at 1476.157 kb on - strand, within MPMX20_01411 at 1476.171 kb on - strand, within MPMX20_01411 at 1476.290 kb on - strand, within MPMX20_01411 at 1476.364 kb on - strand, within MPMX20_01411 at 1476.389 kb on + strand, within MPMX20_01411 at 1476.547 kb on + strand at 1476.608 kb on + strand at 1476.608 kb on + strand at 1476.608 kb on + strand at 1476.608 kb on + strand at 1476.608 kb on + strand at 1476.616 kb on - strand at 1476.616 kb on - strand at 1476.616 kb on - strand at 1476.702 kb on + strand, within MPMX20_01412 at 1476.776 kb on + strand, within MPMX20_01412 at 1476.784 kb on - strand, within MPMX20_01412 at 1476.844 kb on + strand, within MPMX20_01412 at 1476.867 kb on + strand, within MPMX20_01412 at 1476.867 kb on + strand, within MPMX20_01412 at 1476.877 kb on - strand, within MPMX20_01412 at 1476.893 kb on + strand, within MPMX20_01412 at 1476.934 kb on + strand, within MPMX20_01412 at 1476.977 kb on + strand, within MPMX20_01412 at 1477.078 kb on - strand at 1477.137 kb on - strand, within MPMX20_01413 at 1477.138 kb on + strand, within MPMX20_01413 at 1477.206 kb on + strand, within MPMX20_01413 at 1477.214 kb on - strand, within MPMX20_01413 at 1477.229 kb on + strand, within MPMX20_01413 at 1477.300 kb on + strand at 1477.349 kb on - strand at 1477.367 kb on + strand, within MPMX20_01414 at 1477.367 kb on + strand, within MPMX20_01414 at 1477.367 kb on + strand, within MPMX20_01414 at 1477.367 kb on + strand, within MPMX20_01414 at 1477.367 kb on + strand, within MPMX20_01414 at 1477.377 kb on + strand, within MPMX20_01414 at 1477.406 kb on + strand, within MPMX20_01414 at 1477.414 kb on - strand, within MPMX20_01414 at 1477.434 kb on + strand, within MPMX20_01414 at 1477.434 kb on + strand, within MPMX20_01414 at 1477.452 kb on + strand, within MPMX20_01414 at 1477.452 kb on + strand, within MPMX20_01414 at 1477.452 kb on + strand, within MPMX20_01414 at 1477.460 kb on - strand, within MPMX20_01414 at 1477.467 kb on + strand, within MPMX20_01414 at 1477.512 kb on + strand, within MPMX20_01414 at 1477.554 kb on + strand, within MPMX20_01414 at 1477.562 kb on - strand, within MPMX20_01414 at 1477.666 kb on + strand, within MPMX20_01414 at 1477.722 kb on + strand, within MPMX20_01414 at 1477.776 kb on + strand at 1477.776 kb on + strand at 1477.792 kb on - strand at 1477.798 kb on - strand at 1477.870 kb on + strand at 1477.878 kb on - strand at 1477.898 kb on + strand, within MPMX20_01415 at 1478.093 kb on + strand, within MPMX20_01415 at 1478.110 kb on - strand, within MPMX20_01415 at 1478.112 kb on - strand, within MPMX20_01415 at 1478.145 kb on + strand, within MPMX20_01415 at 1478.145 kb on + strand, within MPMX20_01415 at 1478.153 kb on - strand, within MPMX20_01415 at 1478.220 kb on - strand, within MPMX20_01415 at 1478.233 kb on - strand, within MPMX20_01415 at 1478.235 kb on + strand, within MPMX20_01415 at 1478.273 kb on + strand, within MPMX20_01415 at 1478.309 kb on + strand, within MPMX20_01415
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 1,476,086 - -2.3 1,476,112 + +1.1 1,476,117 + -2.0 1,476,149 + MPMX20_01411 0.14 -2.6 1,476,157 - MPMX20_01411 0.16 +0.6 1,476,171 - MPMX20_01411 0.19 +1.7 1,476,290 - MPMX20_01411 0.42 +0.3 1,476,364 - MPMX20_01411 0.56 -1.6 1,476,389 + MPMX20_01411 0.61 -3.4 1,476,547 + +0.2 1,476,608 + +2.9 1,476,608 + +1.9 1,476,608 + -2.3 1,476,608 + +0.9 1,476,608 + -1.4 1,476,616 - -0.7 1,476,616 - +0.7 1,476,616 - +2.5 1,476,702 + MPMX20_01412 0.23 -0.1 1,476,776 + MPMX20_01412 0.38 -2.8 1,476,784 - MPMX20_01412 0.40 +0.9 1,476,844 + MPMX20_01412 0.52 -2.7 1,476,867 + MPMX20_01412 0.57 +0.9 1,476,867 + MPMX20_01412 0.57 -1.9 1,476,877 - MPMX20_01412 0.59 -1.9 1,476,893 + MPMX20_01412 0.62 +0.5 1,476,934 + MPMX20_01412 0.71 +3.3 1,476,977 + MPMX20_01412 0.79 -2.3 1,477,078 - +2.1 1,477,137 - MPMX20_01413 0.28 -1.1 1,477,138 + MPMX20_01413 0.28 -0.2 1,477,206 + MPMX20_01413 0.56 +0.1 1,477,214 - MPMX20_01413 0.59 -1.2 1,477,229 + MPMX20_01413 0.65 -3.4 1,477,300 + -2.4 1,477,349 - -3.0 1,477,367 + MPMX20_01414 0.11 -0.4 1,477,367 + MPMX20_01414 0.11 +1.0 1,477,367 + MPMX20_01414 0.11 -1.0 1,477,367 + MPMX20_01414 0.11 +0.1 1,477,367 + MPMX20_01414 0.11 +3.1 1,477,377 + MPMX20_01414 0.13 -2.7 1,477,406 + MPMX20_01414 0.20 +1.3 1,477,414 - MPMX20_01414 0.22 +0.7 1,477,434 + MPMX20_01414 0.26 +1.2 1,477,434 + MPMX20_01414 0.26 -0.3 1,477,452 + MPMX20_01414 0.30 -3.0 1,477,452 + MPMX20_01414 0.30 -2.4 1,477,452 + MPMX20_01414 0.30 +0.7 1,477,460 - MPMX20_01414 0.32 -3.1 1,477,467 + MPMX20_01414 0.33 +1.7 1,477,512 + MPMX20_01414 0.43 +1.4 1,477,554 + MPMX20_01414 0.53 +2.3 1,477,562 - MPMX20_01414 0.54 -1.9 1,477,666 + MPMX20_01414 0.77 +2.5 1,477,722 + MPMX20_01414 0.90 +2.3 1,477,776 + -1.2 1,477,776 + -2.6 1,477,792 - +1.7 1,477,798 - +1.0 1,477,870 + +1.1 1,477,878 - +0.6 1,477,898 + MPMX20_01415 0.10 -1.8 1,478,093 + MPMX20_01415 0.38 -2.9 1,478,110 - MPMX20_01415 0.40 +1.5 1,478,112 - MPMX20_01415 0.40 +1.7 1,478,145 + MPMX20_01415 0.45 +0.6 1,478,145 + MPMX20_01415 0.45 +1.4 1,478,153 - MPMX20_01415 0.46 -1.7 1,478,220 - MPMX20_01415 0.56 +2.5 1,478,233 - MPMX20_01415 0.57 +0.1 1,478,235 + MPMX20_01415 0.58 -2.3 1,478,273 + MPMX20_01415 0.63 -3.7 1,478,309 + MPMX20_01415 0.68 -2.2
Or see this region's nucleotide sequence