Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01413

Experiment: octanoate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01411 and MPMX20_01412 are separated by 3 nucleotidesMPMX20_01412 and MPMX20_01413 overlap by 8 nucleotidesMPMX20_01413 and MPMX20_01414 are separated by 1 nucleotidesMPMX20_01414 and MPMX20_01415 are separated by 58 nucleotides MPMX20_01411: MPMX20_01411 - Molybdenum cofactor biosynthesis protein B, at 1,476,075 to 1,476,587 _01411 MPMX20_01412: MPMX20_01412 - Cyclic pyranopterin monophosphate synthase, at 1,476,591 to 1,477,076 _01412 MPMX20_01413: MPMX20_01413 - Molybdopterin synthase sulfur carrier subunit, at 1,477,069 to 1,477,314 _01413 MPMX20_01414: MPMX20_01414 - Molybdopterin synthase catalytic subunit, at 1,477,316 to 1,477,768 _01414 MPMX20_01415: MPMX20_01415 - Inner membrane protein YbhL, at 1,477,827 to 1,478,534 _01415 Position (kb) 1477 1478Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1476.086 kb on - strandat 1476.112 kb on + strandat 1476.117 kb on + strandat 1476.149 kb on + strand, within MPMX20_01411at 1476.157 kb on - strand, within MPMX20_01411at 1476.171 kb on - strand, within MPMX20_01411at 1476.290 kb on - strand, within MPMX20_01411at 1476.364 kb on - strand, within MPMX20_01411at 1476.389 kb on + strand, within MPMX20_01411at 1476.547 kb on + strandat 1476.608 kb on + strandat 1476.608 kb on + strandat 1476.608 kb on + strandat 1476.608 kb on + strandat 1476.608 kb on + strandat 1476.616 kb on - strandat 1476.616 kb on - strandat 1476.616 kb on - strandat 1476.702 kb on + strand, within MPMX20_01412at 1476.776 kb on + strand, within MPMX20_01412at 1476.784 kb on - strand, within MPMX20_01412at 1476.844 kb on + strand, within MPMX20_01412at 1476.867 kb on + strand, within MPMX20_01412at 1476.867 kb on + strand, within MPMX20_01412at 1476.877 kb on - strand, within MPMX20_01412at 1476.893 kb on + strand, within MPMX20_01412at 1476.934 kb on + strand, within MPMX20_01412at 1476.977 kb on + strand, within MPMX20_01412at 1477.078 kb on - strandat 1477.137 kb on - strand, within MPMX20_01413at 1477.138 kb on + strand, within MPMX20_01413at 1477.206 kb on + strand, within MPMX20_01413at 1477.214 kb on - strand, within MPMX20_01413at 1477.229 kb on + strand, within MPMX20_01413at 1477.300 kb on + strandat 1477.349 kb on - strandat 1477.367 kb on + strand, within MPMX20_01414at 1477.367 kb on + strand, within MPMX20_01414at 1477.367 kb on + strand, within MPMX20_01414at 1477.367 kb on + strand, within MPMX20_01414at 1477.367 kb on + strand, within MPMX20_01414at 1477.377 kb on + strand, within MPMX20_01414at 1477.406 kb on + strand, within MPMX20_01414at 1477.414 kb on - strand, within MPMX20_01414at 1477.434 kb on + strand, within MPMX20_01414at 1477.434 kb on + strand, within MPMX20_01414at 1477.452 kb on + strand, within MPMX20_01414at 1477.452 kb on + strand, within MPMX20_01414at 1477.452 kb on + strand, within MPMX20_01414at 1477.460 kb on - strand, within MPMX20_01414at 1477.467 kb on + strand, within MPMX20_01414at 1477.512 kb on + strand, within MPMX20_01414at 1477.554 kb on + strand, within MPMX20_01414at 1477.562 kb on - strand, within MPMX20_01414at 1477.666 kb on + strand, within MPMX20_01414at 1477.722 kb on + strand, within MPMX20_01414at 1477.776 kb on + strandat 1477.776 kb on + strandat 1477.792 kb on - strandat 1477.798 kb on - strandat 1477.870 kb on + strandat 1477.878 kb on - strandat 1477.898 kb on + strand, within MPMX20_01415at 1478.093 kb on + strand, within MPMX20_01415at 1478.110 kb on - strand, within MPMX20_01415at 1478.112 kb on - strand, within MPMX20_01415at 1478.145 kb on + strand, within MPMX20_01415at 1478.145 kb on + strand, within MPMX20_01415at 1478.153 kb on - strand, within MPMX20_01415at 1478.220 kb on - strand, within MPMX20_01415at 1478.233 kb on - strand, within MPMX20_01415at 1478.235 kb on + strand, within MPMX20_01415at 1478.273 kb on + strand, within MPMX20_01415at 1478.309 kb on + strand, within MPMX20_01415

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
remove
1,476,086 - -2.3
1,476,112 + +1.1
1,476,117 + -2.0
1,476,149 + MPMX20_01411 0.14 -2.6
1,476,157 - MPMX20_01411 0.16 +0.6
1,476,171 - MPMX20_01411 0.19 +1.7
1,476,290 - MPMX20_01411 0.42 +0.3
1,476,364 - MPMX20_01411 0.56 -1.6
1,476,389 + MPMX20_01411 0.61 -3.4
1,476,547 + +0.2
1,476,608 + +2.9
1,476,608 + +1.9
1,476,608 + -2.3
1,476,608 + +0.9
1,476,608 + -1.4
1,476,616 - -0.7
1,476,616 - +0.7
1,476,616 - +2.5
1,476,702 + MPMX20_01412 0.23 -0.1
1,476,776 + MPMX20_01412 0.38 -2.8
1,476,784 - MPMX20_01412 0.40 +0.9
1,476,844 + MPMX20_01412 0.52 -2.7
1,476,867 + MPMX20_01412 0.57 +0.9
1,476,867 + MPMX20_01412 0.57 -1.9
1,476,877 - MPMX20_01412 0.59 -1.9
1,476,893 + MPMX20_01412 0.62 +0.5
1,476,934 + MPMX20_01412 0.71 +3.3
1,476,977 + MPMX20_01412 0.79 -2.3
1,477,078 - +2.1
1,477,137 - MPMX20_01413 0.28 -1.1
1,477,138 + MPMX20_01413 0.28 -0.2
1,477,206 + MPMX20_01413 0.56 +0.1
1,477,214 - MPMX20_01413 0.59 -1.2
1,477,229 + MPMX20_01413 0.65 -3.4
1,477,300 + -2.4
1,477,349 - -3.0
1,477,367 + MPMX20_01414 0.11 -0.4
1,477,367 + MPMX20_01414 0.11 +1.0
1,477,367 + MPMX20_01414 0.11 -1.0
1,477,367 + MPMX20_01414 0.11 +0.1
1,477,367 + MPMX20_01414 0.11 +3.1
1,477,377 + MPMX20_01414 0.13 -2.7
1,477,406 + MPMX20_01414 0.20 +1.3
1,477,414 - MPMX20_01414 0.22 +0.7
1,477,434 + MPMX20_01414 0.26 +1.2
1,477,434 + MPMX20_01414 0.26 -0.3
1,477,452 + MPMX20_01414 0.30 -3.0
1,477,452 + MPMX20_01414 0.30 -2.4
1,477,452 + MPMX20_01414 0.30 +0.7
1,477,460 - MPMX20_01414 0.32 -3.1
1,477,467 + MPMX20_01414 0.33 +1.7
1,477,512 + MPMX20_01414 0.43 +1.4
1,477,554 + MPMX20_01414 0.53 +2.3
1,477,562 - MPMX20_01414 0.54 -1.9
1,477,666 + MPMX20_01414 0.77 +2.5
1,477,722 + MPMX20_01414 0.90 +2.3
1,477,776 + -1.2
1,477,776 + -2.6
1,477,792 - +1.7
1,477,798 - +1.0
1,477,870 + +1.1
1,477,878 - +0.6
1,477,898 + MPMX20_01415 0.10 -1.8
1,478,093 + MPMX20_01415 0.38 -2.9
1,478,110 - MPMX20_01415 0.40 +1.5
1,478,112 - MPMX20_01415 0.40 +1.7
1,478,145 + MPMX20_01415 0.45 +0.6
1,478,145 + MPMX20_01415 0.45 +1.4
1,478,153 - MPMX20_01415 0.46 -1.7
1,478,220 - MPMX20_01415 0.56 +2.5
1,478,233 - MPMX20_01415 0.57 +0.1
1,478,235 + MPMX20_01415 0.58 -2.3
1,478,273 + MPMX20_01415 0.63 -3.7
1,478,309 + MPMX20_01415 0.68 -2.2

Or see this region's nucleotide sequence