Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01329 and MPMX20_01330 are separated by 288 nucleotides MPMX20_01330 and MPMX20_01331 are separated by 155 nucleotides MPMX20_01331 and MPMX20_01332 are separated by 128 nucleotides
MPMX20_01329: MPMX20_01329 - Ferric uptake regulation protein, at 1,388,483 to 1,388,929
_01329
MPMX20_01330: MPMX20_01330 - Flavodoxin 1, at 1,389,218 to 1,389,748
_01330
MPMX20_01331: MPMX20_01331 - putative protein YbfE, at 1,389,904 to 1,390,191
_01331
MPMX20_01332: MPMX20_01332 - Esterase YbfF, at 1,390,320 to 1,391,093
_01332
Position (kb)
1389
1390
1391 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1388.906 kb on - strand at 1389.009 kb on - strand at 1389.122 kb on + strand at 1389.122 kb on + strand at 1389.122 kb on + strand at 1389.122 kb on + strand at 1389.122 kb on + strand at 1389.122 kb on + strand at 1389.130 kb on - strand at 1389.130 kb on - strand at 1389.130 kb on - strand at 1389.130 kb on - strand at 1389.130 kb on - strand at 1389.130 kb on - strand at 1389.135 kb on - strand at 1389.192 kb on + strand at 1389.250 kb on - strand at 1389.809 kb on - strand at 1389.822 kb on + strand at 1389.854 kb on + strand at 1389.854 kb on + strand at 1389.854 kb on + strand at 1389.854 kb on + strand at 1389.854 kb on + strand at 1389.854 kb on + strand at 1389.854 kb on + strand at 1389.854 kb on + strand at 1389.854 kb on + strand at 1389.854 kb on + strand at 1389.854 kb on + strand at 1389.862 kb on - strand at 1389.862 kb on - strand at 1389.862 kb on - strand at 1389.862 kb on - strand at 1389.862 kb on - strand at 1389.862 kb on - strand at 1389.864 kb on - strand at 1389.869 kb on - strand at 1389.880 kb on + strand at 1389.923 kb on + strand at 1389.931 kb on - strand at 1389.946 kb on - strand, within MPMX20_01331 at 1389.960 kb on + strand, within MPMX20_01331 at 1390.016 kb on + strand, within MPMX20_01331 at 1390.029 kb on + strand, within MPMX20_01331 at 1390.061 kb on + strand, within MPMX20_01331 at 1390.069 kb on - strand, within MPMX20_01331 at 1390.092 kb on + strand, within MPMX20_01331 at 1390.155 kb on + strand, within MPMX20_01331 at 1390.155 kb on + strand, within MPMX20_01331 at 1390.225 kb on + strand at 1390.469 kb on + strand, within MPMX20_01332 at 1390.499 kb on + strand, within MPMX20_01332 at 1390.523 kb on + strand, within MPMX20_01332 at 1390.548 kb on + strand, within MPMX20_01332 at 1390.553 kb on - strand, within MPMX20_01332 at 1390.647 kb on + strand, within MPMX20_01332 at 1390.654 kb on + strand, within MPMX20_01332 at 1390.655 kb on - strand, within MPMX20_01332 at 1390.671 kb on + strand, within MPMX20_01332 at 1390.687 kb on - strand, within MPMX20_01332 at 1390.743 kb on - strand, within MPMX20_01332 at 1390.772 kb on - strand, within MPMX20_01332 at 1390.790 kb on - strand, within MPMX20_01332 at 1390.994 kb on + strand, within MPMX20_01332 at 1390.994 kb on + strand, within MPMX20_01332 at 1390.994 kb on + strand, within MPMX20_01332 at 1391.002 kb on - strand, within MPMX20_01332 at 1391.007 kb on - strand, within MPMX20_01332 at 1391.013 kb on + strand, within MPMX20_01332 at 1391.122 kb on - strand at 1391.126 kb on + strand at 1391.127 kb on + strand at 1391.127 kb on + strand at 1391.129 kb on - strand at 1391.129 kb on - strand at 1391.163 kb on + strand at 1391.163 kb on - strand at 1391.171 kb on - strand at 1391.171 kb on - strand at 1391.171 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 1,388,906 - +0.3 1,389,009 - +0.8 1,389,122 + +1.9 1,389,122 + -0.4 1,389,122 + -1.3 1,389,122 + -2.0 1,389,122 + +0.5 1,389,122 + +2.4 1,389,130 - -3.3 1,389,130 - -1.8 1,389,130 - -2.2 1,389,130 - -0.2 1,389,130 - +2.4 1,389,130 - +2.5 1,389,135 - +1.2 1,389,192 + -0.2 1,389,250 - +2.1 1,389,809 - +0.3 1,389,822 + -0.8 1,389,854 + -3.0 1,389,854 + -1.1 1,389,854 + +0.3 1,389,854 + +3.0 1,389,854 + +0.0 1,389,854 + +1.8 1,389,854 + +1.3 1,389,854 + -2.1 1,389,854 + -3.8 1,389,854 + +1.7 1,389,854 + +1.9 1,389,862 - -2.3 1,389,862 - -3.2 1,389,862 - +2.0 1,389,862 - +1.0 1,389,862 - +0.9 1,389,862 - -2.0 1,389,864 - +1.2 1,389,869 - +1.1 1,389,880 + -1.6 1,389,923 + -1.6 1,389,931 - -2.1 1,389,946 - MPMX20_01331 0.15 +0.4 1,389,960 + MPMX20_01331 0.19 +1.5 1,390,016 + MPMX20_01331 0.39 +0.0 1,390,029 + MPMX20_01331 0.43 +2.8 1,390,061 + MPMX20_01331 0.55 -1.1 1,390,069 - MPMX20_01331 0.57 +1.4 1,390,092 + MPMX20_01331 0.65 +2.6 1,390,155 + MPMX20_01331 0.87 -4.0 1,390,155 + MPMX20_01331 0.87 -0.2 1,390,225 + +1.4 1,390,469 + MPMX20_01332 0.19 +0.3 1,390,499 + MPMX20_01332 0.23 -0.4 1,390,523 + MPMX20_01332 0.26 +0.3 1,390,548 + MPMX20_01332 0.29 +0.4 1,390,553 - MPMX20_01332 0.30 +3.2 1,390,647 + MPMX20_01332 0.42 +1.6 1,390,654 + MPMX20_01332 0.43 -2.6 1,390,655 - MPMX20_01332 0.43 +2.8 1,390,671 + MPMX20_01332 0.45 -0.2 1,390,687 - MPMX20_01332 0.47 -1.3 1,390,743 - MPMX20_01332 0.55 -0.7 1,390,772 - MPMX20_01332 0.58 +1.3 1,390,790 - MPMX20_01332 0.61 -2.1 1,390,994 + MPMX20_01332 0.87 +3.0 1,390,994 + MPMX20_01332 0.87 -0.2 1,390,994 + MPMX20_01332 0.87 -1.6 1,391,002 - MPMX20_01332 0.88 -0.1 1,391,007 - MPMX20_01332 0.89 +3.5 1,391,013 + MPMX20_01332 0.90 +1.4 1,391,122 - -1.0 1,391,126 + -0.4 1,391,127 + +1.1 1,391,127 + +4.6 1,391,129 - -1.4 1,391,129 - +0.9 1,391,163 + +1.0 1,391,163 - -0.2 1,391,171 - -2.4 1,391,171 - -0.2 1,391,171 - +1.4
Or see this region's nucleotide sequence