Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00880

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00878 and MPMX20_00879 are separated by 112 nucleotidesMPMX20_00879 and MPMX20_00880 overlap by 4 nucleotidesMPMX20_00880 and MPMX20_00881 are separated by 106 nucleotidesMPMX20_00881 and MPMX20_00882 are separated by 40 nucleotides MPMX20_00878: MPMX20_00878 - Proline--tRNA ligase, at 927,606 to 929,324 _00878 MPMX20_00879: MPMX20_00879 - tRNA (adenine(37)-N6)-methyltransferase, at 929,437 to 930,141 _00879 MPMX20_00880: MPMX20_00880 - Outer membrane lipoprotein RcsF, at 930,138 to 930,542 _00880 MPMX20_00881: MPMX20_00881 - D-methionine-binding lipoprotein MetQ, at 930,649 to 931,464 _00881 MPMX20_00882: MPMX20_00882 - D-methionine transport system permease protein MetI, at 931,505 to 932,158 _00882 Position (kb) 930 931Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 929.427 kb on - strandat 929.598 kb on + strand, within MPMX20_00879at 929.612 kb on + strand, within MPMX20_00879at 929.633 kb on + strand, within MPMX20_00879at 929.653 kb on - strand, within MPMX20_00879at 929.701 kb on + strand, within MPMX20_00879at 929.713 kb on + strand, within MPMX20_00879at 929.769 kb on + strand, within MPMX20_00879at 929.769 kb on + strand, within MPMX20_00879at 929.769 kb on + strand, within MPMX20_00879at 929.777 kb on - strand, within MPMX20_00879at 929.777 kb on - strand, within MPMX20_00879at 929.777 kb on - strand, within MPMX20_00879at 929.777 kb on - strand, within MPMX20_00879at 929.777 kb on - strand, within MPMX20_00879at 929.777 kb on - strand, within MPMX20_00879at 929.810 kb on - strand, within MPMX20_00879at 929.839 kb on + strand, within MPMX20_00879at 929.907 kb on + strand, within MPMX20_00879at 929.932 kb on - strand, within MPMX20_00879at 929.977 kb on - strand, within MPMX20_00879at 930.005 kb on + strand, within MPMX20_00879at 930.018 kb on - strand, within MPMX20_00879at 930.055 kb on + strand, within MPMX20_00879at 930.060 kb on + strand, within MPMX20_00879at 930.148 kb on + strandat 930.161 kb on - strandat 930.212 kb on + strand, within MPMX20_00880at 930.212 kb on + strand, within MPMX20_00880at 930.220 kb on - strand, within MPMX20_00880at 930.256 kb on + strand, within MPMX20_00880at 930.291 kb on + strand, within MPMX20_00880at 930.303 kb on + strand, within MPMX20_00880at 930.308 kb on + strand, within MPMX20_00880at 930.311 kb on - strand, within MPMX20_00880at 930.363 kb on + strand, within MPMX20_00880at 930.446 kb on + strand, within MPMX20_00880at 930.464 kb on - strand, within MPMX20_00880at 930.464 kb on - strand, within MPMX20_00880at 930.483 kb on + strand, within MPMX20_00880at 930.488 kb on + strand, within MPMX20_00880at 930.488 kb on + strand, within MPMX20_00880at 930.488 kb on + strand, within MPMX20_00880at 930.488 kb on + strand, within MPMX20_00880at 930.491 kb on - strand, within MPMX20_00880at 930.496 kb on - strand, within MPMX20_00880at 930.589 kb on - strandat 930.614 kb on - strandat 930.619 kb on - strandat 930.630 kb on + strandat 930.638 kb on - strandat 930.655 kb on + strandat 930.655 kb on + strandat 930.655 kb on + strandat 930.655 kb on + strandat 930.655 kb on + strandat 930.655 kb on + strandat 930.655 kb on + strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.721 kb on - strandat 930.837 kb on - strand, within MPMX20_00881at 930.868 kb on + strand, within MPMX20_00881at 930.889 kb on + strand, within MPMX20_00881at 930.906 kb on + strand, within MPMX20_00881at 930.906 kb on + strand, within MPMX20_00881at 930.978 kb on + strand, within MPMX20_00881at 931.005 kb on + strand, within MPMX20_00881at 931.013 kb on - strand, within MPMX20_00881at 931.035 kb on + strand, within MPMX20_00881at 931.068 kb on + strand, within MPMX20_00881at 931.076 kb on - strand, within MPMX20_00881at 931.117 kb on + strand, within MPMX20_00881at 931.117 kb on + strand, within MPMX20_00881at 931.138 kb on + strand, within MPMX20_00881at 931.139 kb on + strand, within MPMX20_00881at 931.139 kb on + strand, within MPMX20_00881at 931.139 kb on + strand, within MPMX20_00881at 931.147 kb on - strand, within MPMX20_00881at 931.147 kb on - strand, within MPMX20_00881at 931.158 kb on + strand, within MPMX20_00881at 931.166 kb on - strand, within MPMX20_00881at 931.191 kb on + strand, within MPMX20_00881at 931.199 kb on - strand, within MPMX20_00881at 931.204 kb on - strand, within MPMX20_00881at 931.229 kb on + strand, within MPMX20_00881at 931.230 kb on - strand, within MPMX20_00881at 931.297 kb on + strand, within MPMX20_00881at 931.338 kb on + strand, within MPMX20_00881at 931.350 kb on + strand, within MPMX20_00881at 931.369 kb on - strand, within MPMX20_00881at 931.397 kb on + strandat 931.415 kb on - strandat 931.434 kb on + strandat 931.465 kb on + strandat 931.473 kb on - strandat 931.473 kb on - strandat 931.493 kb on - strandat 931.497 kb on + strandat 931.520 kb on + strandat 931.521 kb on + strandat 931.539 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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929,427 - +1.2
929,598 + MPMX20_00879 0.23 +1.5
929,612 + MPMX20_00879 0.25 +0.8
929,633 + MPMX20_00879 0.28 +0.5
929,653 - MPMX20_00879 0.31 +0.7
929,701 + MPMX20_00879 0.37 +3.3
929,713 + MPMX20_00879 0.39 -0.8
929,769 + MPMX20_00879 0.47 -0.8
929,769 + MPMX20_00879 0.47 -1.5
929,769 + MPMX20_00879 0.47 +3.2
929,777 - MPMX20_00879 0.48 -0.5
929,777 - MPMX20_00879 0.48 +1.5
929,777 - MPMX20_00879 0.48 -1.6
929,777 - MPMX20_00879 0.48 -3.0
929,777 - MPMX20_00879 0.48 -2.1
929,777 - MPMX20_00879 0.48 +2.0
929,810 - MPMX20_00879 0.53 -3.9
929,839 + MPMX20_00879 0.57 -1.2
929,907 + MPMX20_00879 0.67 -2.7
929,932 - MPMX20_00879 0.70 +1.3
929,977 - MPMX20_00879 0.77 -3.7
930,005 + MPMX20_00879 0.81 +2.1
930,018 - MPMX20_00879 0.82 -2.8
930,055 + MPMX20_00879 0.88 -0.8
930,060 + MPMX20_00879 0.88 -2.0
930,148 + -0.8
930,161 - -2.8
930,212 + MPMX20_00880 0.18 +2.2
930,212 + MPMX20_00880 0.18 +0.0
930,220 - MPMX20_00880 0.20 -0.5
930,256 + MPMX20_00880 0.29 +1.0
930,291 + MPMX20_00880 0.38 -2.1
930,303 + MPMX20_00880 0.41 -2.5
930,308 + MPMX20_00880 0.42 +2.8
930,311 - MPMX20_00880 0.43 +3.0
930,363 + MPMX20_00880 0.56 -1.2
930,446 + MPMX20_00880 0.76 +0.5
930,464 - MPMX20_00880 0.80 -2.2
930,464 - MPMX20_00880 0.80 -1.8
930,483 + MPMX20_00880 0.85 -2.6
930,488 + MPMX20_00880 0.86 +2.1
930,488 + MPMX20_00880 0.86 +3.2
930,488 + MPMX20_00880 0.86 +2.2
930,488 + MPMX20_00880 0.86 +1.8
930,491 - MPMX20_00880 0.87 -0.2
930,496 - MPMX20_00880 0.88 +0.6
930,589 - +2.4
930,614 - +1.0
930,619 - +3.8
930,630 + +1.0
930,638 - -0.6
930,655 + +2.1
930,655 + +2.3
930,655 + -2.4
930,655 + -2.6
930,655 + -2.0
930,655 + -1.3
930,655 + +0.8
930,663 - +0.2
930,663 - +0.2
930,663 - -0.0
930,663 - +0.9
930,663 - +0.5
930,663 - -3.3
930,663 - -0.3
930,663 - +2.5
930,663 - -2.6
930,663 - -2.3
930,663 - -1.0
930,663 - -2.7
930,721 - -1.7
930,837 - MPMX20_00881 0.23 -2.3
930,868 + MPMX20_00881 0.27 -0.2
930,889 + MPMX20_00881 0.29 +0.9
930,906 + MPMX20_00881 0.31 +2.1
930,906 + MPMX20_00881 0.31 +1.3
930,978 + MPMX20_00881 0.40 -3.5
931,005 + MPMX20_00881 0.44 -0.5
931,013 - MPMX20_00881 0.45 +0.7
931,035 + MPMX20_00881 0.47 +1.8
931,068 + MPMX20_00881 0.51 -2.2
931,076 - MPMX20_00881 0.52 -3.8
931,117 + MPMX20_00881 0.57 +2.0
931,117 + MPMX20_00881 0.57 +1.0
931,138 + MPMX20_00881 0.60 -3.1
931,139 + MPMX20_00881 0.60 +0.4
931,139 + MPMX20_00881 0.60 +2.0
931,139 + MPMX20_00881 0.60 -2.8
931,147 - MPMX20_00881 0.61 +0.9
931,147 - MPMX20_00881 0.61 -2.4
931,158 + MPMX20_00881 0.62 +0.3
931,166 - MPMX20_00881 0.63 +1.3
931,191 + MPMX20_00881 0.66 -0.7
931,199 - MPMX20_00881 0.67 +1.4
931,204 - MPMX20_00881 0.68 -2.7
931,229 + MPMX20_00881 0.71 +1.2
931,230 - MPMX20_00881 0.71 -2.0
931,297 + MPMX20_00881 0.79 +0.8
931,338 + MPMX20_00881 0.84 -0.9
931,350 + MPMX20_00881 0.86 -3.5
931,369 - MPMX20_00881 0.88 +0.3
931,397 + -0.5
931,415 - +0.8
931,434 + +1.8
931,465 + +0.5
931,473 - -2.6
931,473 - -2.9
931,493 - +2.1
931,497 + +2.4
931,520 + +0.8
931,521 + -2.0
931,539 + +0.5

Or see this region's nucleotide sequence