Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00870 and MPMX20_00871 are separated by 65 nucleotides MPMX20_00871 and MPMX20_00872 are separated by 57 nucleotides
MPMX20_00870: MPMX20_00870 - Constitutive lysine decarboxylase, at 921,252 to 923,384
_00870
MPMX20_00871: MPMX20_00871 - hypothetical protein, at 923,450 to 923,839
_00871
MPMX20_00872: MPMX20_00872 - tRNA(Ile)-lysidine synthase, at 923,897 to 925,183
_00872
Position (kb) 923
924 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 922.458 kb on - strand, within MPMX20_00870 at 922.582 kb on - strand, within MPMX20_00870 at 922.648 kb on - strand, within MPMX20_00870 at 922.875 kb on + strand, within MPMX20_00870 at 922.875 kb on + strand, within MPMX20_00870 at 922.875 kb on + strand, within MPMX20_00870 at 922.893 kb on + strand, within MPMX20_00870 at 922.901 kb on - strand, within MPMX20_00870 at 922.933 kb on + strand, within MPMX20_00870 at 922.941 kb on - strand, within MPMX20_00870 at 923.016 kb on - strand, within MPMX20_00870 at 923.186 kb on + strand at 923.195 kb on + strand at 923.195 kb on + strand at 923.265 kb on - strand at 923.290 kb on + strand at 923.298 kb on - strand at 923.298 kb on - strand at 923.311 kb on - strand at 923.349 kb on + strand at 923.356 kb on + strand at 923.357 kb on + strand at 923.455 kb on + strand at 923.506 kb on + strand, within MPMX20_00871 at 923.523 kb on + strand, within MPMX20_00871 at 923.528 kb on + strand, within MPMX20_00871 at 923.528 kb on + strand, within MPMX20_00871 at 923.531 kb on - strand, within MPMX20_00871 at 923.536 kb on - strand, within MPMX20_00871 at 923.536 kb on - strand, within MPMX20_00871 at 923.559 kb on + strand, within MPMX20_00871 at 923.567 kb on - strand, within MPMX20_00871 at 923.567 kb on - strand, within MPMX20_00871 at 923.567 kb on - strand, within MPMX20_00871 at 923.620 kb on + strand, within MPMX20_00871 at 923.623 kb on + strand, within MPMX20_00871 at 923.831 kb on - strand at 923.840 kb on + strand at 923.840 kb on + strand at 923.840 kb on + strand at 923.848 kb on - strand at 923.848 kb on - strand at 923.850 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 922,458 - MPMX20_00870 0.57 -0.2 922,582 - MPMX20_00870 0.62 -2.1 922,648 - MPMX20_00870 0.65 +2.7 922,875 + MPMX20_00870 0.76 +1.5 922,875 + MPMX20_00870 0.76 -2.2 922,875 + MPMX20_00870 0.76 +1.0 922,893 + MPMX20_00870 0.77 -2.5 922,901 - MPMX20_00870 0.77 -1.6 922,933 + MPMX20_00870 0.79 +2.4 922,941 - MPMX20_00870 0.79 -2.0 923,016 - MPMX20_00870 0.83 +0.2 923,186 + +1.3 923,195 + +2.4 923,195 + +1.5 923,265 - +1.2 923,290 + -2.6 923,298 - +0.6 923,298 - +2.2 923,311 - -0.5 923,349 + -4.0 923,356 + +3.0 923,357 + +1.2 923,455 + +0.1 923,506 + MPMX20_00871 0.14 +4.8 923,523 + MPMX20_00871 0.19 +1.1 923,528 + MPMX20_00871 0.20 -0.1 923,528 + MPMX20_00871 0.20 +2.3 923,531 - MPMX20_00871 0.21 +1.8 923,536 - MPMX20_00871 0.22 +2.2 923,536 - MPMX20_00871 0.22 +0.6 923,559 + MPMX20_00871 0.28 +0.8 923,567 - MPMX20_00871 0.30 +0.2 923,567 - MPMX20_00871 0.30 -1.0 923,567 - MPMX20_00871 0.30 -1.1 923,620 + MPMX20_00871 0.44 +1.8 923,623 + MPMX20_00871 0.44 +2.3 923,831 - -1.9 923,840 + +1.4 923,840 + +1.0 923,840 + -0.8 923,848 - +2.3 923,848 - +3.4 923,850 + +0.7
Or see this region's nucleotide sequence