Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00822

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00821 and MPMX20_00822 overlap by 4 nucleotidesMPMX20_00822 and MPMX20_00823 are separated by 105 nucleotidesMPMX20_00823 and MPMX20_00824 are separated by 63 nucleotides MPMX20_00821: MPMX20_00821 - putative ABC transporter ATP-binding protein YadG, at 864,459 to 865,385 _00821 MPMX20_00822: MPMX20_00822 - Inner membrane transport permease YadH, at 865,382 to 866,152 _00822 MPMX20_00823: MPMX20_00823 - hypothetical protein, at 866,258 to 866,698 _00823 MPMX20_00824: MPMX20_00824 - hypothetical protein, at 866,762 to 868,009 _00824 Position (kb) 865 866 867Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 864.391 kb on + strandat 864.391 kb on + strandat 864.399 kb on - strandat 864.399 kb on - strandat 864.425 kb on - strandat 864.450 kb on + strandat 864.475 kb on + strandat 864.475 kb on + strandat 864.483 kb on - strandat 864.483 kb on - strandat 864.685 kb on - strand, within MPMX20_00821at 864.721 kb on + strand, within MPMX20_00821at 864.729 kb on - strand, within MPMX20_00821at 864.739 kb on - strand, within MPMX20_00821at 864.927 kb on - strand, within MPMX20_00821at 864.942 kb on - strand, within MPMX20_00821at 864.981 kb on + strand, within MPMX20_00821at 864.981 kb on + strand, within MPMX20_00821at 864.989 kb on - strand, within MPMX20_00821at 865.042 kb on + strand, within MPMX20_00821at 865.042 kb on + strand, within MPMX20_00821at 865.050 kb on - strand, within MPMX20_00821at 865.119 kb on - strand, within MPMX20_00821at 865.280 kb on + strand, within MPMX20_00821at 865.288 kb on - strand, within MPMX20_00821at 865.302 kb on - strandat 865.348 kb on + strandat 865.379 kb on + strandat 865.429 kb on + strandat 865.461 kb on + strand, within MPMX20_00822at 865.461 kb on + strand, within MPMX20_00822at 865.513 kb on + strand, within MPMX20_00822at 865.545 kb on + strand, within MPMX20_00822at 865.553 kb on - strand, within MPMX20_00822at 865.553 kb on - strand, within MPMX20_00822at 865.587 kb on - strand, within MPMX20_00822at 865.600 kb on - strand, within MPMX20_00822at 865.653 kb on + strand, within MPMX20_00822at 865.661 kb on - strand, within MPMX20_00822at 865.671 kb on - strand, within MPMX20_00822at 865.799 kb on - strand, within MPMX20_00822at 865.855 kb on + strand, within MPMX20_00822at 865.887 kb on + strand, within MPMX20_00822at 865.887 kb on + strand, within MPMX20_00822at 865.927 kb on - strand, within MPMX20_00822at 865.927 kb on - strand, within MPMX20_00822at 865.940 kb on + strand, within MPMX20_00822at 865.947 kb on + strand, within MPMX20_00822at 865.950 kb on + strand, within MPMX20_00822at 865.950 kb on - strand, within MPMX20_00822at 865.958 kb on - strand, within MPMX20_00822at 865.969 kb on + strand, within MPMX20_00822at 866.054 kb on + strand, within MPMX20_00822at 866.136 kb on - strandat 866.148 kb on + strandat 866.243 kb on + strandat 866.248 kb on + strandat 866.256 kb on - strandat 866.307 kb on - strand, within MPMX20_00823at 866.333 kb on - strand, within MPMX20_00823at 866.339 kb on + strand, within MPMX20_00823at 866.362 kb on - strand, within MPMX20_00823at 866.403 kb on + strand, within MPMX20_00823at 866.411 kb on - strand, within MPMX20_00823at 866.520 kb on - strand, within MPMX20_00823at 866.530 kb on + strand, within MPMX20_00823at 866.562 kb on - strand, within MPMX20_00823at 866.573 kb on + strand, within MPMX20_00823at 866.573 kb on + strand, within MPMX20_00823at 866.573 kb on + strand, within MPMX20_00823at 866.574 kb on + strand, within MPMX20_00823at 866.581 kb on - strand, within MPMX20_00823at 866.581 kb on - strand, within MPMX20_00823at 866.581 kb on - strand, within MPMX20_00823at 866.581 kb on - strand, within MPMX20_00823at 866.624 kb on + strand, within MPMX20_00823at 866.839 kb on - strandat 866.863 kb on - strandat 866.928 kb on - strand, within MPMX20_00824at 867.091 kb on - strand, within MPMX20_00824

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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864,391 + -1.5
864,391 + -1.2
864,399 - +2.3
864,399 - -0.8
864,425 - +0.7
864,450 + -0.6
864,475 + -2.3
864,475 + -2.1
864,483 - +0.6
864,483 - -3.5
864,685 - MPMX20_00821 0.24 -2.9
864,721 + MPMX20_00821 0.28 +1.8
864,729 - MPMX20_00821 0.29 +2.0
864,739 - MPMX20_00821 0.30 +1.1
864,927 - MPMX20_00821 0.50 -2.3
864,942 - MPMX20_00821 0.52 +0.7
864,981 + MPMX20_00821 0.56 +0.2
864,981 + MPMX20_00821 0.56 +0.5
864,989 - MPMX20_00821 0.57 -2.9
865,042 + MPMX20_00821 0.63 +3.3
865,042 + MPMX20_00821 0.63 +2.2
865,050 - MPMX20_00821 0.64 -3.0
865,119 - MPMX20_00821 0.71 +0.9
865,280 + MPMX20_00821 0.89 -3.0
865,288 - MPMX20_00821 0.89 +3.9
865,302 - -1.9
865,348 + +1.4
865,379 + +1.3
865,429 + -2.5
865,461 + MPMX20_00822 0.10 +0.2
865,461 + MPMX20_00822 0.10 +1.8
865,513 + MPMX20_00822 0.17 +2.8
865,545 + MPMX20_00822 0.21 -1.6
865,553 - MPMX20_00822 0.22 +1.4
865,553 - MPMX20_00822 0.22 +2.1
865,587 - MPMX20_00822 0.27 -3.1
865,600 - MPMX20_00822 0.28 +1.4
865,653 + MPMX20_00822 0.35 -2.1
865,661 - MPMX20_00822 0.36 +2.4
865,671 - MPMX20_00822 0.37 +0.8
865,799 - MPMX20_00822 0.54 +0.6
865,855 + MPMX20_00822 0.61 +2.7
865,887 + MPMX20_00822 0.65 +2.9
865,887 + MPMX20_00822 0.65 -0.5
865,927 - MPMX20_00822 0.71 +0.5
865,927 - MPMX20_00822 0.71 -3.2
865,940 + MPMX20_00822 0.72 -1.7
865,947 + MPMX20_00822 0.73 +0.4
865,950 + MPMX20_00822 0.74 -1.5
865,950 - MPMX20_00822 0.74 +0.9
865,958 - MPMX20_00822 0.75 +1.0
865,969 + MPMX20_00822 0.76 -0.9
866,054 + MPMX20_00822 0.87 +0.0
866,136 - -3.5
866,148 + +0.9
866,243 + +1.2
866,248 + +1.5
866,256 - -0.1
866,307 - MPMX20_00823 0.11 +2.5
866,333 - MPMX20_00823 0.17 +2.8
866,339 + MPMX20_00823 0.18 -1.6
866,362 - MPMX20_00823 0.24 -3.2
866,403 + MPMX20_00823 0.33 +0.8
866,411 - MPMX20_00823 0.35 -2.8
866,520 - MPMX20_00823 0.59 -1.6
866,530 + MPMX20_00823 0.62 +0.0
866,562 - MPMX20_00823 0.69 -2.0
866,573 + MPMX20_00823 0.71 +0.0
866,573 + MPMX20_00823 0.71 +0.2
866,573 + MPMX20_00823 0.71 +1.9
866,574 + MPMX20_00823 0.72 -3.0
866,581 - MPMX20_00823 0.73 +2.8
866,581 - MPMX20_00823 0.73 -0.3
866,581 - MPMX20_00823 0.73 +0.7
866,581 - MPMX20_00823 0.73 +2.8
866,624 + MPMX20_00823 0.83 -2.7
866,839 - +1.3
866,863 - +1.7
866,928 - MPMX20_00824 0.13 +0.8
867,091 - MPMX20_00824 0.26 -0.5

Or see this region's nucleotide sequence