Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00821 and MPMX20_00822 overlap by 4 nucleotides MPMX20_00822 and MPMX20_00823 are separated by 105 nucleotides MPMX20_00823 and MPMX20_00824 are separated by 63 nucleotides
MPMX20_00821: MPMX20_00821 - putative ABC transporter ATP-binding protein YadG, at 864,459 to 865,385
_00821
MPMX20_00822: MPMX20_00822 - Inner membrane transport permease YadH, at 865,382 to 866,152
_00822
MPMX20_00823: MPMX20_00823 - hypothetical protein, at 866,258 to 866,698
_00823
MPMX20_00824: MPMX20_00824 - hypothetical protein, at 866,762 to 868,009
_00824
Position (kb)
865
866
867 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 864.391 kb on + strand at 864.391 kb on + strand at 864.399 kb on - strand at 864.399 kb on - strand at 864.425 kb on - strand at 864.450 kb on + strand at 864.475 kb on + strand at 864.475 kb on + strand at 864.483 kb on - strand at 864.483 kb on - strand at 864.685 kb on - strand, within MPMX20_00821 at 864.721 kb on + strand, within MPMX20_00821 at 864.729 kb on - strand, within MPMX20_00821 at 864.739 kb on - strand, within MPMX20_00821 at 864.927 kb on - strand, within MPMX20_00821 at 864.942 kb on - strand, within MPMX20_00821 at 864.981 kb on + strand, within MPMX20_00821 at 864.981 kb on + strand, within MPMX20_00821 at 864.989 kb on - strand, within MPMX20_00821 at 865.042 kb on + strand, within MPMX20_00821 at 865.042 kb on + strand, within MPMX20_00821 at 865.050 kb on - strand, within MPMX20_00821 at 865.119 kb on - strand, within MPMX20_00821 at 865.280 kb on + strand, within MPMX20_00821 at 865.288 kb on - strand, within MPMX20_00821 at 865.302 kb on - strand at 865.348 kb on + strand at 865.379 kb on + strand at 865.429 kb on + strand at 865.461 kb on + strand, within MPMX20_00822 at 865.461 kb on + strand, within MPMX20_00822 at 865.513 kb on + strand, within MPMX20_00822 at 865.545 kb on + strand, within MPMX20_00822 at 865.553 kb on - strand, within MPMX20_00822 at 865.553 kb on - strand, within MPMX20_00822 at 865.587 kb on - strand, within MPMX20_00822 at 865.600 kb on - strand, within MPMX20_00822 at 865.653 kb on + strand, within MPMX20_00822 at 865.661 kb on - strand, within MPMX20_00822 at 865.671 kb on - strand, within MPMX20_00822 at 865.799 kb on - strand, within MPMX20_00822 at 865.855 kb on + strand, within MPMX20_00822 at 865.887 kb on + strand, within MPMX20_00822 at 865.887 kb on + strand, within MPMX20_00822 at 865.927 kb on - strand, within MPMX20_00822 at 865.927 kb on - strand, within MPMX20_00822 at 865.940 kb on + strand, within MPMX20_00822 at 865.947 kb on + strand, within MPMX20_00822 at 865.950 kb on + strand, within MPMX20_00822 at 865.950 kb on - strand, within MPMX20_00822 at 865.958 kb on - strand, within MPMX20_00822 at 865.969 kb on + strand, within MPMX20_00822 at 866.054 kb on + strand, within MPMX20_00822 at 866.136 kb on - strand at 866.148 kb on + strand at 866.243 kb on + strand at 866.248 kb on + strand at 866.256 kb on - strand at 866.307 kb on - strand, within MPMX20_00823 at 866.333 kb on - strand, within MPMX20_00823 at 866.339 kb on + strand, within MPMX20_00823 at 866.362 kb on - strand, within MPMX20_00823 at 866.403 kb on + strand, within MPMX20_00823 at 866.411 kb on - strand, within MPMX20_00823 at 866.520 kb on - strand, within MPMX20_00823 at 866.530 kb on + strand, within MPMX20_00823 at 866.562 kb on - strand, within MPMX20_00823 at 866.573 kb on + strand, within MPMX20_00823 at 866.573 kb on + strand, within MPMX20_00823 at 866.573 kb on + strand, within MPMX20_00823 at 866.574 kb on + strand, within MPMX20_00823 at 866.581 kb on - strand, within MPMX20_00823 at 866.581 kb on - strand, within MPMX20_00823 at 866.581 kb on - strand, within MPMX20_00823 at 866.581 kb on - strand, within MPMX20_00823 at 866.624 kb on + strand, within MPMX20_00823 at 866.839 kb on - strand at 866.863 kb on - strand at 866.928 kb on - strand, within MPMX20_00824 at 867.091 kb on - strand, within MPMX20_00824
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 864,391 + -1.5 864,391 + -1.2 864,399 - +2.3 864,399 - -0.8 864,425 - +0.7 864,450 + -0.6 864,475 + -2.3 864,475 + -2.1 864,483 - +0.6 864,483 - -3.5 864,685 - MPMX20_00821 0.24 -2.9 864,721 + MPMX20_00821 0.28 +1.8 864,729 - MPMX20_00821 0.29 +2.0 864,739 - MPMX20_00821 0.30 +1.1 864,927 - MPMX20_00821 0.50 -2.3 864,942 - MPMX20_00821 0.52 +0.7 864,981 + MPMX20_00821 0.56 +0.2 864,981 + MPMX20_00821 0.56 +0.5 864,989 - MPMX20_00821 0.57 -2.9 865,042 + MPMX20_00821 0.63 +3.3 865,042 + MPMX20_00821 0.63 +2.2 865,050 - MPMX20_00821 0.64 -3.0 865,119 - MPMX20_00821 0.71 +0.9 865,280 + MPMX20_00821 0.89 -3.0 865,288 - MPMX20_00821 0.89 +3.9 865,302 - -1.9 865,348 + +1.4 865,379 + +1.3 865,429 + -2.5 865,461 + MPMX20_00822 0.10 +0.2 865,461 + MPMX20_00822 0.10 +1.8 865,513 + MPMX20_00822 0.17 +2.8 865,545 + MPMX20_00822 0.21 -1.6 865,553 - MPMX20_00822 0.22 +1.4 865,553 - MPMX20_00822 0.22 +2.1 865,587 - MPMX20_00822 0.27 -3.1 865,600 - MPMX20_00822 0.28 +1.4 865,653 + MPMX20_00822 0.35 -2.1 865,661 - MPMX20_00822 0.36 +2.4 865,671 - MPMX20_00822 0.37 +0.8 865,799 - MPMX20_00822 0.54 +0.6 865,855 + MPMX20_00822 0.61 +2.7 865,887 + MPMX20_00822 0.65 +2.9 865,887 + MPMX20_00822 0.65 -0.5 865,927 - MPMX20_00822 0.71 +0.5 865,927 - MPMX20_00822 0.71 -3.2 865,940 + MPMX20_00822 0.72 -1.7 865,947 + MPMX20_00822 0.73 +0.4 865,950 + MPMX20_00822 0.74 -1.5 865,950 - MPMX20_00822 0.74 +0.9 865,958 - MPMX20_00822 0.75 +1.0 865,969 + MPMX20_00822 0.76 -0.9 866,054 + MPMX20_00822 0.87 +0.0 866,136 - -3.5 866,148 + +0.9 866,243 + +1.2 866,248 + +1.5 866,256 - -0.1 866,307 - MPMX20_00823 0.11 +2.5 866,333 - MPMX20_00823 0.17 +2.8 866,339 + MPMX20_00823 0.18 -1.6 866,362 - MPMX20_00823 0.24 -3.2 866,403 + MPMX20_00823 0.33 +0.8 866,411 - MPMX20_00823 0.35 -2.8 866,520 - MPMX20_00823 0.59 -1.6 866,530 + MPMX20_00823 0.62 +0.0 866,562 - MPMX20_00823 0.69 -2.0 866,573 + MPMX20_00823 0.71 +0.0 866,573 + MPMX20_00823 0.71 +0.2 866,573 + MPMX20_00823 0.71 +1.9 866,574 + MPMX20_00823 0.72 -3.0 866,581 - MPMX20_00823 0.73 +2.8 866,581 - MPMX20_00823 0.73 -0.3 866,581 - MPMX20_00823 0.73 +0.7 866,581 - MPMX20_00823 0.73 +2.8 866,624 + MPMX20_00823 0.83 -2.7 866,839 - +1.3 866,863 - +1.7 866,928 - MPMX20_00824 0.13 +0.8 867,091 - MPMX20_00824 0.26 -0.5
Or see this region's nucleotide sequence