Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00487 and MPMX20_00488 are separated by 75 nucleotides MPMX20_00488 and MPMX20_00489 are separated by 66 nucleotides MPMX20_00489 and MPMX20_00490 are separated by 84 nucleotides
MPMX20_00487: MPMX20_00487 - Inner membrane protein YtfF, at 500,430 to 501,395
_00487
MPMX20_00488: MPMX20_00488 - HTH-type transcriptional activator RhaS, at 501,471 to 502,310
_00488
MPMX20_00489: MPMX20_00489 - Quinone oxidoreductase 2, at 502,377 to 503,225
_00489
MPMX20_00490: MPMX20_00490 - hypothetical protein, at 503,310 to 503,696
_00490
Position (kb)
501
502
503 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 500.492 kb on + strand at 500.560 kb on + strand, within MPMX20_00487 at 500.560 kb on + strand, within MPMX20_00487 at 500.560 kb on + strand, within MPMX20_00487 at 500.568 kb on - strand, within MPMX20_00487 at 500.568 kb on - strand, within MPMX20_00487 at 500.568 kb on - strand, within MPMX20_00487 at 500.568 kb on - strand, within MPMX20_00487 at 500.568 kb on - strand, within MPMX20_00487 at 500.568 kb on - strand, within MPMX20_00487 at 500.568 kb on - strand, within MPMX20_00487 at 500.638 kb on + strand, within MPMX20_00487 at 500.638 kb on + strand, within MPMX20_00487 at 500.646 kb on - strand, within MPMX20_00487 at 500.657 kb on + strand, within MPMX20_00487 at 500.657 kb on + strand, within MPMX20_00487 at 500.657 kb on + strand, within MPMX20_00487 at 500.665 kb on - strand, within MPMX20_00487 at 500.708 kb on + strand, within MPMX20_00487 at 500.716 kb on - strand, within MPMX20_00487 at 500.750 kb on - strand, within MPMX20_00487 at 500.753 kb on + strand, within MPMX20_00487 at 500.773 kb on - strand, within MPMX20_00487 at 500.775 kb on + strand, within MPMX20_00487 at 500.873 kb on + strand, within MPMX20_00487 at 500.873 kb on + strand, within MPMX20_00487 at 500.873 kb on + strand, within MPMX20_00487 at 500.876 kb on - strand, within MPMX20_00487 at 500.876 kb on - strand, within MPMX20_00487 at 500.948 kb on + strand, within MPMX20_00487 at 500.962 kb on - strand, within MPMX20_00487 at 500.993 kb on - strand, within MPMX20_00487 at 500.998 kb on + strand, within MPMX20_00487 at 500.998 kb on - strand, within MPMX20_00487 at 501.001 kb on + strand, within MPMX20_00487 at 501.001 kb on + strand, within MPMX20_00487 at 501.006 kb on + strand, within MPMX20_00487 at 501.006 kb on - strand, within MPMX20_00487 at 501.055 kb on + strand, within MPMX20_00487 at 501.065 kb on + strand, within MPMX20_00487 at 501.079 kb on + strand, within MPMX20_00487 at 501.122 kb on + strand, within MPMX20_00487 at 501.142 kb on + strand, within MPMX20_00487 at 501.252 kb on - strand, within MPMX20_00487 at 501.286 kb on + strand, within MPMX20_00487 at 501.354 kb on + strand at 501.357 kb on - strand at 501.372 kb on + strand at 501.388 kb on - strand at 501.436 kb on - strand at 501.436 kb on - strand at 501.436 kb on - strand at 501.436 kb on - strand at 501.436 kb on - strand at 501.436 kb on - strand at 501.436 kb on - strand at 501.488 kb on + strand at 501.496 kb on - strand at 501.496 kb on - strand at 501.509 kb on - strand at 501.532 kb on - strand at 501.532 kb on - strand at 501.532 kb on - strand at 501.731 kb on + strand, within MPMX20_00488 at 501.731 kb on + strand, within MPMX20_00488 at 501.731 kb on + strand, within MPMX20_00488 at 501.731 kb on + strand, within MPMX20_00488 at 501.739 kb on - strand, within MPMX20_00488 at 501.739 kb on - strand, within MPMX20_00488 at 501.739 kb on - strand, within MPMX20_00488 at 501.739 kb on - strand, within MPMX20_00488 at 501.742 kb on + strand, within MPMX20_00488 at 501.843 kb on - strand, within MPMX20_00488 at 501.912 kb on + strand, within MPMX20_00488 at 501.965 kb on + strand, within MPMX20_00488 at 501.980 kb on - strand, within MPMX20_00488 at 501.981 kb on - strand, within MPMX20_00488 at 501.990 kb on - strand, within MPMX20_00488 at 502.018 kb on - strand, within MPMX20_00488 at 502.059 kb on - strand, within MPMX20_00488 at 502.133 kb on - strand, within MPMX20_00488 at 502.137 kb on + strand, within MPMX20_00488 at 502.147 kb on - strand, within MPMX20_00488 at 502.161 kb on + strand, within MPMX20_00488 at 502.161 kb on + strand, within MPMX20_00488 at 502.177 kb on + strand, within MPMX20_00488 at 502.214 kb on + strand, within MPMX20_00488 at 502.214 kb on + strand, within MPMX20_00488 at 502.242 kb on + strand at 502.275 kb on - strand at 502.282 kb on + strand at 502.287 kb on + strand at 502.287 kb on + strand at 502.295 kb on - strand at 502.295 kb on - strand at 502.303 kb on - strand at 502.338 kb on + strand at 502.395 kb on - strand at 502.395 kb on - strand at 502.396 kb on - strand at 502.447 kb on - strand at 502.447 kb on - strand at 502.447 kb on - strand at 502.465 kb on + strand, within MPMX20_00489 at 502.494 kb on - strand, within MPMX20_00489 at 502.520 kb on + strand, within MPMX20_00489 at 502.520 kb on + strand, within MPMX20_00489 at 502.520 kb on + strand, within MPMX20_00489 at 502.528 kb on - strand, within MPMX20_00489 at 502.530 kb on + strand, within MPMX20_00489 at 502.538 kb on - strand, within MPMX20_00489 at 502.538 kb on - strand, within MPMX20_00489 at 502.622 kb on + strand, within MPMX20_00489 at 502.622 kb on + strand, within MPMX20_00489 at 502.622 kb on + strand, within MPMX20_00489 at 502.646 kb on + strand, within MPMX20_00489 at 502.649 kb on + strand, within MPMX20_00489 at 502.806 kb on + strand, within MPMX20_00489 at 502.870 kb on - strand, within MPMX20_00489 at 502.920 kb on + strand, within MPMX20_00489 at 502.920 kb on + strand, within MPMX20_00489 at 502.928 kb on - strand, within MPMX20_00489 at 502.976 kb on + strand, within MPMX20_00489 at 502.995 kb on - strand, within MPMX20_00489 at 503.055 kb on + strand, within MPMX20_00489 at 503.092 kb on - strand, within MPMX20_00489 at 503.108 kb on - strand, within MPMX20_00489 at 503.161 kb on + strand at 503.161 kb on + strand at 503.171 kb on - strand at 503.234 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 500,492 + -1.1 500,560 + MPMX20_00487 0.13 +0.9 500,560 + MPMX20_00487 0.13 +2.3 500,560 + MPMX20_00487 0.13 +0.2 500,568 - MPMX20_00487 0.14 +2.0 500,568 - MPMX20_00487 0.14 +2.1 500,568 - MPMX20_00487 0.14 +0.1 500,568 - MPMX20_00487 0.14 -1.7 500,568 - MPMX20_00487 0.14 -3.3 500,568 - MPMX20_00487 0.14 -0.4 500,568 - MPMX20_00487 0.14 +1.3 500,638 + MPMX20_00487 0.22 +2.0 500,638 + MPMX20_00487 0.22 +1.0 500,646 - MPMX20_00487 0.22 +1.5 500,657 + MPMX20_00487 0.23 +0.1 500,657 + MPMX20_00487 0.23 -0.5 500,657 + MPMX20_00487 0.23 -1.5 500,665 - MPMX20_00487 0.24 -0.1 500,708 + MPMX20_00487 0.29 -0.8 500,716 - MPMX20_00487 0.30 -0.4 500,750 - MPMX20_00487 0.33 -3.3 500,753 + MPMX20_00487 0.33 +3.3 500,773 - MPMX20_00487 0.36 -1.9 500,775 + MPMX20_00487 0.36 -1.9 500,873 + MPMX20_00487 0.46 +3.1 500,873 + MPMX20_00487 0.46 +2.2 500,873 + MPMX20_00487 0.46 -0.6 500,876 - MPMX20_00487 0.46 -0.2 500,876 - MPMX20_00487 0.46 -2.4 500,948 + MPMX20_00487 0.54 +0.7 500,962 - MPMX20_00487 0.55 -2.8 500,993 - MPMX20_00487 0.58 -0.7 500,998 + MPMX20_00487 0.59 -1.2 500,998 - MPMX20_00487 0.59 +0.5 501,001 + MPMX20_00487 0.59 -3.5 501,001 + MPMX20_00487 0.59 -1.5 501,006 + MPMX20_00487 0.60 +1.7 501,006 - MPMX20_00487 0.60 -2.1 501,055 + MPMX20_00487 0.65 -1.5 501,065 + MPMX20_00487 0.66 +0.8 501,079 + MPMX20_00487 0.67 -1.6 501,122 + MPMX20_00487 0.72 +1.3 501,142 + MPMX20_00487 0.74 -1.5 501,252 - MPMX20_00487 0.85 +1.1 501,286 + MPMX20_00487 0.89 -2.9 501,354 + -0.6 501,357 - -0.5 501,372 + -2.9 501,388 - -2.1 501,436 - +0.1 501,436 - -4.0 501,436 - +0.6 501,436 - +0.2 501,436 - +0.3 501,436 - -2.5 501,436 - -0.6 501,488 + -0.2 501,496 - +0.3 501,496 - -0.5 501,509 - +0.5 501,532 - -3.9 501,532 - -2.0 501,532 - -0.6 501,731 + MPMX20_00488 0.31 +0.5 501,731 + MPMX20_00488 0.31 +4.0 501,731 + MPMX20_00488 0.31 +1.1 501,731 + MPMX20_00488 0.31 +1.1 501,739 - MPMX20_00488 0.32 +1.7 501,739 - MPMX20_00488 0.32 +0.9 501,739 - MPMX20_00488 0.32 +1.1 501,739 - MPMX20_00488 0.32 +1.5 501,742 + MPMX20_00488 0.32 -2.5 501,843 - MPMX20_00488 0.44 -2.5 501,912 + MPMX20_00488 0.53 +5.2 501,965 + MPMX20_00488 0.59 +2.6 501,980 - MPMX20_00488 0.61 +0.3 501,981 - MPMX20_00488 0.61 +0.3 501,990 - MPMX20_00488 0.62 +1.2 502,018 - MPMX20_00488 0.65 +0.4 502,059 - MPMX20_00488 0.70 -0.5 502,133 - MPMX20_00488 0.79 -0.4 502,137 + MPMX20_00488 0.79 +2.0 502,147 - MPMX20_00488 0.80 -1.0 502,161 + MPMX20_00488 0.82 -2.3 502,161 + MPMX20_00488 0.82 +1.6 502,177 + MPMX20_00488 0.84 -0.5 502,214 + MPMX20_00488 0.88 +3.7 502,214 + MPMX20_00488 0.88 +0.8 502,242 + +3.4 502,275 - +2.7 502,282 + +0.1 502,287 + +3.9 502,287 + -1.2 502,295 - +1.8 502,295 - +0.5 502,303 - +3.7 502,338 + +2.4 502,395 - +2.6 502,395 - +0.4 502,396 - -1.5 502,447 - +0.9 502,447 - +1.4 502,447 - -1.9 502,465 + MPMX20_00489 0.10 +1.2 502,494 - MPMX20_00489 0.14 +1.4 502,520 + MPMX20_00489 0.17 +1.9 502,520 + MPMX20_00489 0.17 -2.0 502,520 + MPMX20_00489 0.17 -2.3 502,528 - MPMX20_00489 0.18 +0.3 502,530 + MPMX20_00489 0.18 +0.4 502,538 - MPMX20_00489 0.19 -2.2 502,538 - MPMX20_00489 0.19 +1.0 502,622 + MPMX20_00489 0.29 -1.3 502,622 + MPMX20_00489 0.29 -3.3 502,622 + MPMX20_00489 0.29 +1.5 502,646 + MPMX20_00489 0.32 -4.0 502,649 + MPMX20_00489 0.32 +3.4 502,806 + MPMX20_00489 0.51 -0.1 502,870 - MPMX20_00489 0.58 -3.3 502,920 + MPMX20_00489 0.64 +2.9 502,920 + MPMX20_00489 0.64 -2.3 502,928 - MPMX20_00489 0.65 +1.5 502,976 + MPMX20_00489 0.71 +2.3 502,995 - MPMX20_00489 0.73 +3.6 503,055 + MPMX20_00489 0.80 -2.3 503,092 - MPMX20_00489 0.84 +0.3 503,108 - MPMX20_00489 0.86 -1.1 503,161 + -1.7 503,161 + -3.3 503,171 - -1.9 503,234 + -3.1
Or see this region's nucleotide sequence