Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00488

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00487 and MPMX20_00488 are separated by 75 nucleotidesMPMX20_00488 and MPMX20_00489 are separated by 66 nucleotidesMPMX20_00489 and MPMX20_00490 are separated by 84 nucleotides MPMX20_00487: MPMX20_00487 - Inner membrane protein YtfF, at 500,430 to 501,395 _00487 MPMX20_00488: MPMX20_00488 - HTH-type transcriptional activator RhaS, at 501,471 to 502,310 _00488 MPMX20_00489: MPMX20_00489 - Quinone oxidoreductase 2, at 502,377 to 503,225 _00489 MPMX20_00490: MPMX20_00490 - hypothetical protein, at 503,310 to 503,696 _00490 Position (kb) 501 502 503Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 500.492 kb on + strandat 500.560 kb on + strand, within MPMX20_00487at 500.560 kb on + strand, within MPMX20_00487at 500.560 kb on + strand, within MPMX20_00487at 500.568 kb on - strand, within MPMX20_00487at 500.568 kb on - strand, within MPMX20_00487at 500.568 kb on - strand, within MPMX20_00487at 500.568 kb on - strand, within MPMX20_00487at 500.568 kb on - strand, within MPMX20_00487at 500.568 kb on - strand, within MPMX20_00487at 500.568 kb on - strand, within MPMX20_00487at 500.638 kb on + strand, within MPMX20_00487at 500.638 kb on + strand, within MPMX20_00487at 500.646 kb on - strand, within MPMX20_00487at 500.657 kb on + strand, within MPMX20_00487at 500.657 kb on + strand, within MPMX20_00487at 500.657 kb on + strand, within MPMX20_00487at 500.665 kb on - strand, within MPMX20_00487at 500.708 kb on + strand, within MPMX20_00487at 500.716 kb on - strand, within MPMX20_00487at 500.750 kb on - strand, within MPMX20_00487at 500.753 kb on + strand, within MPMX20_00487at 500.773 kb on - strand, within MPMX20_00487at 500.775 kb on + strand, within MPMX20_00487at 500.873 kb on + strand, within MPMX20_00487at 500.873 kb on + strand, within MPMX20_00487at 500.873 kb on + strand, within MPMX20_00487at 500.876 kb on - strand, within MPMX20_00487at 500.876 kb on - strand, within MPMX20_00487at 500.948 kb on + strand, within MPMX20_00487at 500.962 kb on - strand, within MPMX20_00487at 500.993 kb on - strand, within MPMX20_00487at 500.998 kb on + strand, within MPMX20_00487at 500.998 kb on - strand, within MPMX20_00487at 501.001 kb on + strand, within MPMX20_00487at 501.001 kb on + strand, within MPMX20_00487at 501.006 kb on + strand, within MPMX20_00487at 501.006 kb on - strand, within MPMX20_00487at 501.055 kb on + strand, within MPMX20_00487at 501.065 kb on + strand, within MPMX20_00487at 501.079 kb on + strand, within MPMX20_00487at 501.122 kb on + strand, within MPMX20_00487at 501.142 kb on + strand, within MPMX20_00487at 501.252 kb on - strand, within MPMX20_00487at 501.286 kb on + strand, within MPMX20_00487at 501.354 kb on + strandat 501.357 kb on - strandat 501.372 kb on + strandat 501.388 kb on - strandat 501.436 kb on - strandat 501.436 kb on - strandat 501.436 kb on - strandat 501.436 kb on - strandat 501.436 kb on - strandat 501.436 kb on - strandat 501.436 kb on - strandat 501.488 kb on + strandat 501.496 kb on - strandat 501.496 kb on - strandat 501.509 kb on - strandat 501.532 kb on - strandat 501.532 kb on - strandat 501.532 kb on - strandat 501.731 kb on + strand, within MPMX20_00488at 501.731 kb on + strand, within MPMX20_00488at 501.731 kb on + strand, within MPMX20_00488at 501.731 kb on + strand, within MPMX20_00488at 501.739 kb on - strand, within MPMX20_00488at 501.739 kb on - strand, within MPMX20_00488at 501.739 kb on - strand, within MPMX20_00488at 501.739 kb on - strand, within MPMX20_00488at 501.742 kb on + strand, within MPMX20_00488at 501.843 kb on - strand, within MPMX20_00488at 501.912 kb on + strand, within MPMX20_00488at 501.965 kb on + strand, within MPMX20_00488at 501.980 kb on - strand, within MPMX20_00488at 501.981 kb on - strand, within MPMX20_00488at 501.990 kb on - strand, within MPMX20_00488at 502.018 kb on - strand, within MPMX20_00488at 502.059 kb on - strand, within MPMX20_00488at 502.133 kb on - strand, within MPMX20_00488at 502.137 kb on + strand, within MPMX20_00488at 502.147 kb on - strand, within MPMX20_00488at 502.161 kb on + strand, within MPMX20_00488at 502.161 kb on + strand, within MPMX20_00488at 502.177 kb on + strand, within MPMX20_00488at 502.214 kb on + strand, within MPMX20_00488at 502.214 kb on + strand, within MPMX20_00488at 502.242 kb on + strandat 502.275 kb on - strandat 502.282 kb on + strandat 502.287 kb on + strandat 502.287 kb on + strandat 502.295 kb on - strandat 502.295 kb on - strandat 502.303 kb on - strandat 502.338 kb on + strandat 502.395 kb on - strandat 502.395 kb on - strandat 502.396 kb on - strandat 502.447 kb on - strandat 502.447 kb on - strandat 502.447 kb on - strandat 502.465 kb on + strand, within MPMX20_00489at 502.494 kb on - strand, within MPMX20_00489at 502.520 kb on + strand, within MPMX20_00489at 502.520 kb on + strand, within MPMX20_00489at 502.520 kb on + strand, within MPMX20_00489at 502.528 kb on - strand, within MPMX20_00489at 502.530 kb on + strand, within MPMX20_00489at 502.538 kb on - strand, within MPMX20_00489at 502.538 kb on - strand, within MPMX20_00489at 502.622 kb on + strand, within MPMX20_00489at 502.622 kb on + strand, within MPMX20_00489at 502.622 kb on + strand, within MPMX20_00489at 502.646 kb on + strand, within MPMX20_00489at 502.649 kb on + strand, within MPMX20_00489at 502.806 kb on + strand, within MPMX20_00489at 502.870 kb on - strand, within MPMX20_00489at 502.920 kb on + strand, within MPMX20_00489at 502.920 kb on + strand, within MPMX20_00489at 502.928 kb on - strand, within MPMX20_00489at 502.976 kb on + strand, within MPMX20_00489at 502.995 kb on - strand, within MPMX20_00489at 503.055 kb on + strand, within MPMX20_00489at 503.092 kb on - strand, within MPMX20_00489at 503.108 kb on - strand, within MPMX20_00489at 503.161 kb on + strandat 503.161 kb on + strandat 503.171 kb on - strandat 503.234 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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500,492 + -1.1
500,560 + MPMX20_00487 0.13 +0.9
500,560 + MPMX20_00487 0.13 +2.3
500,560 + MPMX20_00487 0.13 +0.2
500,568 - MPMX20_00487 0.14 +2.0
500,568 - MPMX20_00487 0.14 +2.1
500,568 - MPMX20_00487 0.14 +0.1
500,568 - MPMX20_00487 0.14 -1.7
500,568 - MPMX20_00487 0.14 -3.3
500,568 - MPMX20_00487 0.14 -0.4
500,568 - MPMX20_00487 0.14 +1.3
500,638 + MPMX20_00487 0.22 +2.0
500,638 + MPMX20_00487 0.22 +1.0
500,646 - MPMX20_00487 0.22 +1.5
500,657 + MPMX20_00487 0.23 +0.1
500,657 + MPMX20_00487 0.23 -0.5
500,657 + MPMX20_00487 0.23 -1.5
500,665 - MPMX20_00487 0.24 -0.1
500,708 + MPMX20_00487 0.29 -0.8
500,716 - MPMX20_00487 0.30 -0.4
500,750 - MPMX20_00487 0.33 -3.3
500,753 + MPMX20_00487 0.33 +3.3
500,773 - MPMX20_00487 0.36 -1.9
500,775 + MPMX20_00487 0.36 -1.9
500,873 + MPMX20_00487 0.46 +3.1
500,873 + MPMX20_00487 0.46 +2.2
500,873 + MPMX20_00487 0.46 -0.6
500,876 - MPMX20_00487 0.46 -0.2
500,876 - MPMX20_00487 0.46 -2.4
500,948 + MPMX20_00487 0.54 +0.7
500,962 - MPMX20_00487 0.55 -2.8
500,993 - MPMX20_00487 0.58 -0.7
500,998 + MPMX20_00487 0.59 -1.2
500,998 - MPMX20_00487 0.59 +0.5
501,001 + MPMX20_00487 0.59 -3.5
501,001 + MPMX20_00487 0.59 -1.5
501,006 + MPMX20_00487 0.60 +1.7
501,006 - MPMX20_00487 0.60 -2.1
501,055 + MPMX20_00487 0.65 -1.5
501,065 + MPMX20_00487 0.66 +0.8
501,079 + MPMX20_00487 0.67 -1.6
501,122 + MPMX20_00487 0.72 +1.3
501,142 + MPMX20_00487 0.74 -1.5
501,252 - MPMX20_00487 0.85 +1.1
501,286 + MPMX20_00487 0.89 -2.9
501,354 + -0.6
501,357 - -0.5
501,372 + -2.9
501,388 - -2.1
501,436 - +0.1
501,436 - -4.0
501,436 - +0.6
501,436 - +0.2
501,436 - +0.3
501,436 - -2.5
501,436 - -0.6
501,488 + -0.2
501,496 - +0.3
501,496 - -0.5
501,509 - +0.5
501,532 - -3.9
501,532 - -2.0
501,532 - -0.6
501,731 + MPMX20_00488 0.31 +0.5
501,731 + MPMX20_00488 0.31 +4.0
501,731 + MPMX20_00488 0.31 +1.1
501,731 + MPMX20_00488 0.31 +1.1
501,739 - MPMX20_00488 0.32 +1.7
501,739 - MPMX20_00488 0.32 +0.9
501,739 - MPMX20_00488 0.32 +1.1
501,739 - MPMX20_00488 0.32 +1.5
501,742 + MPMX20_00488 0.32 -2.5
501,843 - MPMX20_00488 0.44 -2.5
501,912 + MPMX20_00488 0.53 +5.2
501,965 + MPMX20_00488 0.59 +2.6
501,980 - MPMX20_00488 0.61 +0.3
501,981 - MPMX20_00488 0.61 +0.3
501,990 - MPMX20_00488 0.62 +1.2
502,018 - MPMX20_00488 0.65 +0.4
502,059 - MPMX20_00488 0.70 -0.5
502,133 - MPMX20_00488 0.79 -0.4
502,137 + MPMX20_00488 0.79 +2.0
502,147 - MPMX20_00488 0.80 -1.0
502,161 + MPMX20_00488 0.82 -2.3
502,161 + MPMX20_00488 0.82 +1.6
502,177 + MPMX20_00488 0.84 -0.5
502,214 + MPMX20_00488 0.88 +3.7
502,214 + MPMX20_00488 0.88 +0.8
502,242 + +3.4
502,275 - +2.7
502,282 + +0.1
502,287 + +3.9
502,287 + -1.2
502,295 - +1.8
502,295 - +0.5
502,303 - +3.7
502,338 + +2.4
502,395 - +2.6
502,395 - +0.4
502,396 - -1.5
502,447 - +0.9
502,447 - +1.4
502,447 - -1.9
502,465 + MPMX20_00489 0.10 +1.2
502,494 - MPMX20_00489 0.14 +1.4
502,520 + MPMX20_00489 0.17 +1.9
502,520 + MPMX20_00489 0.17 -2.0
502,520 + MPMX20_00489 0.17 -2.3
502,528 - MPMX20_00489 0.18 +0.3
502,530 + MPMX20_00489 0.18 +0.4
502,538 - MPMX20_00489 0.19 -2.2
502,538 - MPMX20_00489 0.19 +1.0
502,622 + MPMX20_00489 0.29 -1.3
502,622 + MPMX20_00489 0.29 -3.3
502,622 + MPMX20_00489 0.29 +1.5
502,646 + MPMX20_00489 0.32 -4.0
502,649 + MPMX20_00489 0.32 +3.4
502,806 + MPMX20_00489 0.51 -0.1
502,870 - MPMX20_00489 0.58 -3.3
502,920 + MPMX20_00489 0.64 +2.9
502,920 + MPMX20_00489 0.64 -2.3
502,928 - MPMX20_00489 0.65 +1.5
502,976 + MPMX20_00489 0.71 +2.3
502,995 - MPMX20_00489 0.73 +3.6
503,055 + MPMX20_00489 0.80 -2.3
503,092 - MPMX20_00489 0.84 +0.3
503,108 - MPMX20_00489 0.86 -1.1
503,161 + -1.7
503,161 + -3.3
503,171 - -1.9
503,234 + -3.1

Or see this region's nucleotide sequence