Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00425

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00423 and MPMX20_00424 are separated by 137 nucleotidesMPMX20_00424 and MPMX20_00425 are separated by 63 nucleotidesMPMX20_00425 and MPMX20_00426 are separated by 40 nucleotidesMPMX20_00426 and MPMX20_00427 are separated by 55 nucleotidesMPMX20_00427 and MPMX20_00428 are separated by 108 nucleotides MPMX20_00423: MPMX20_00423 - 60 kDa chaperonin, at 439,244 to 440,887 _00423 MPMX20_00424: MPMX20_00424 - hypothetical protein, at 441,025 to 441,378 _00424 MPMX20_00425: MPMX20_00425 - L-lysine 2,3-aminomutase, at 441,442 to 442,470 _00425 MPMX20_00426: MPMX20_00426 - Elongation factor P, at 442,511 to 443,077 _00426 MPMX20_00427: MPMX20_00427 - hypothetical protein, at 443,133 to 443,267 _00427 MPMX20_00428: MPMX20_00428 - hypothetical protein, at 443,376 to 443,522 _00428 Position (kb) 441 442 443Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 440.972 kb on + strandat 440.980 kb on - strandat 440.980 kb on - strandat 440.980 kb on - strandat 440.980 kb on - strandat 440.984 kb on + strandat 440.997 kb on + strandat 441.049 kb on - strandat 441.056 kb on - strandat 441.069 kb on - strand, within MPMX20_00424at 441.069 kb on - strand, within MPMX20_00424at 441.069 kb on - strand, within MPMX20_00424at 441.069 kb on - strand, within MPMX20_00424at 441.085 kb on - strand, within MPMX20_00424at 441.097 kb on - strand, within MPMX20_00424at 441.104 kb on + strand, within MPMX20_00424at 441.107 kb on - strand, within MPMX20_00424at 441.109 kb on + strand, within MPMX20_00424at 441.117 kb on - strand, within MPMX20_00424at 441.117 kb on - strand, within MPMX20_00424at 441.117 kb on - strand, within MPMX20_00424at 441.117 kb on - strand, within MPMX20_00424at 441.117 kb on - strand, within MPMX20_00424at 441.117 kb on - strand, within MPMX20_00424at 441.117 kb on - strand, within MPMX20_00424at 441.142 kb on + strand, within MPMX20_00424at 441.216 kb on + strand, within MPMX20_00424at 441.224 kb on - strand, within MPMX20_00424at 441.236 kb on + strand, within MPMX20_00424at 441.290 kb on - strand, within MPMX20_00424at 441.326 kb on - strand, within MPMX20_00424at 441.358 kb on + strandat 441.366 kb on - strandat 441.366 kb on - strandat 441.377 kb on + strandat 441.419 kb on + strandat 441.419 kb on + strandat 441.424 kb on + strandat 441.427 kb on - strandat 441.427 kb on - strandat 441.432 kb on - strandat 441.664 kb on - strand, within MPMX20_00425at 442.032 kb on - strand, within MPMX20_00425at 442.032 kb on - strand, within MPMX20_00425at 442.185 kb on - strand, within MPMX20_00425at 443.164 kb on + strand, within MPMX20_00427at 443.169 kb on + strand, within MPMX20_00427at 443.174 kb on + strand, within MPMX20_00427at 443.174 kb on + strand, within MPMX20_00427at 443.174 kb on + strand, within MPMX20_00427at 443.174 kb on + strand, within MPMX20_00427at 443.174 kb on + strand, within MPMX20_00427at 443.174 kb on + strand, within MPMX20_00427at 443.174 kb on + strand, within MPMX20_00427at 443.182 kb on - strand, within MPMX20_00427at 443.182 kb on - strand, within MPMX20_00427at 443.182 kb on - strand, within MPMX20_00427at 443.182 kb on - strand, within MPMX20_00427at 443.182 kb on - strand, within MPMX20_00427at 443.195 kb on + strand, within MPMX20_00427at 443.197 kb on + strand, within MPMX20_00427at 443.203 kb on - strand, within MPMX20_00427at 443.262 kb on + strandat 443.262 kb on + strandat 443.341 kb on + strandat 443.344 kb on - strandat 443.349 kb on - strandat 443.371 kb on + strandat 443.409 kb on + strand, within MPMX20_00428at 443.436 kb on + strand, within MPMX20_00428at 443.446 kb on - strand, within MPMX20_00428at 443.446 kb on - strand, within MPMX20_00428at 443.446 kb on - strand, within MPMX20_00428at 443.463 kb on - strand, within MPMX20_00428

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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440,972 + -2.8
440,980 - -1.9
440,980 - +0.1
440,980 - +1.4
440,980 - +0.2
440,984 + +3.2
440,997 + +2.4
441,049 - -0.4
441,056 - +2.8
441,069 - MPMX20_00424 0.12 -3.0
441,069 - MPMX20_00424 0.12 -1.3
441,069 - MPMX20_00424 0.12 -2.4
441,069 - MPMX20_00424 0.12 -2.5
441,085 - MPMX20_00424 0.17 -2.9
441,097 - MPMX20_00424 0.20 +2.0
441,104 + MPMX20_00424 0.22 -0.7
441,107 - MPMX20_00424 0.23 +1.4
441,109 + MPMX20_00424 0.24 +0.5
441,117 - MPMX20_00424 0.26 +2.1
441,117 - MPMX20_00424 0.26 +1.6
441,117 - MPMX20_00424 0.26 +1.2
441,117 - MPMX20_00424 0.26 +1.1
441,117 - MPMX20_00424 0.26 +0.9
441,117 - MPMX20_00424 0.26 +0.5
441,117 - MPMX20_00424 0.26 -3.8
441,142 + MPMX20_00424 0.33 +1.3
441,216 + MPMX20_00424 0.54 -1.3
441,224 - MPMX20_00424 0.56 -3.2
441,236 + MPMX20_00424 0.60 -0.5
441,290 - MPMX20_00424 0.75 -2.2
441,326 - MPMX20_00424 0.85 +0.3
441,358 + -2.3
441,366 - -2.0
441,366 - -2.7
441,377 + +6.0
441,419 + -3.1
441,419 + -2.1
441,424 + -0.2
441,427 - -3.6
441,427 - +0.2
441,432 - -1.7
441,664 - MPMX20_00425 0.22 -0.1
442,032 - MPMX20_00425 0.57 +0.3
442,032 - MPMX20_00425 0.57 +0.3
442,185 - MPMX20_00425 0.72 +1.1
443,164 + MPMX20_00427 0.23 -3.8
443,169 + MPMX20_00427 0.27 +0.4
443,174 + MPMX20_00427 0.30 +0.5
443,174 + MPMX20_00427 0.30 +1.4
443,174 + MPMX20_00427 0.30 +3.4
443,174 + MPMX20_00427 0.30 +1.4
443,174 + MPMX20_00427 0.30 -3.4
443,174 + MPMX20_00427 0.30 -1.4
443,174 + MPMX20_00427 0.30 +0.5
443,182 - MPMX20_00427 0.36 -2.5
443,182 - MPMX20_00427 0.36 -0.5
443,182 - MPMX20_00427 0.36 +0.8
443,182 - MPMX20_00427 0.36 -0.2
443,182 - MPMX20_00427 0.36 -1.2
443,195 + MPMX20_00427 0.46 +0.2
443,197 + MPMX20_00427 0.47 +1.2
443,203 - MPMX20_00427 0.52 -1.5
443,262 + -0.3
443,262 + +2.6
443,341 + -0.5
443,344 - +0.5
443,349 - +2.1
443,371 + +2.2
443,409 + MPMX20_00428 0.22 -2.2
443,436 + MPMX20_00428 0.41 -1.3
443,446 - MPMX20_00428 0.48 -2.0
443,446 - MPMX20_00428 0.48 -0.1
443,446 - MPMX20_00428 0.48 -1.2
443,463 - MPMX20_00428 0.59 -3.6

Or see this region's nucleotide sequence