Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00395

Experiment: octanoate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00393 and MPMX20_00394 overlap by 4 nucleotidesMPMX20_00394 and MPMX20_00395 overlap by 56 nucleotidesMPMX20_00395 and MPMX20_00396 are separated by 17 nucleotides MPMX20_00393: MPMX20_00393 - hypothetical protein, at 408,918 to 409,469 _00393 MPMX20_00394: MPMX20_00394 - hypothetical protein, at 409,466 to 410,035 _00394 MPMX20_00395: MPMX20_00395 - hypothetical protein, at 409,980 to 410,216 _00395 MPMX20_00396: MPMX20_00396 - putative cyclic di-GMP phosphodiesterase PdeG, at 410,234 to 411,202 _00396 Position (kb) 409 410 411Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 409.032 kb on + strand, within MPMX20_00393at 409.063 kb on - strand, within MPMX20_00393at 409.063 kb on - strand, within MPMX20_00393at 409.064 kb on - strand, within MPMX20_00393at 409.074 kb on + strand, within MPMX20_00393at 409.082 kb on - strand, within MPMX20_00393at 409.138 kb on - strand, within MPMX20_00393at 409.169 kb on + strand, within MPMX20_00393at 409.265 kb on - strand, within MPMX20_00393at 409.274 kb on + strand, within MPMX20_00393at 409.276 kb on + strand, within MPMX20_00393at 409.329 kb on + strand, within MPMX20_00393at 409.409 kb on - strand, within MPMX20_00393at 409.485 kb on + strandat 409.493 kb on - strandat 409.498 kb on - strandat 409.564 kb on + strand, within MPMX20_00394at 409.564 kb on + strand, within MPMX20_00394at 409.564 kb on + strand, within MPMX20_00394at 409.576 kb on + strand, within MPMX20_00394at 409.611 kb on + strand, within MPMX20_00394at 409.617 kb on - strand, within MPMX20_00394at 409.642 kb on - strand, within MPMX20_00394at 409.652 kb on - strand, within MPMX20_00394at 409.691 kb on + strand, within MPMX20_00394at 409.809 kb on + strand, within MPMX20_00394at 409.809 kb on - strand, within MPMX20_00394at 409.817 kb on - strand, within MPMX20_00394at 409.829 kb on - strand, within MPMX20_00394at 409.831 kb on + strand, within MPMX20_00394at 409.844 kb on + strand, within MPMX20_00394at 409.885 kb on + strand, within MPMX20_00394at 409.885 kb on + strand, within MPMX20_00394at 409.919 kb on - strand, within MPMX20_00394at 409.953 kb on + strand, within MPMX20_00394at 410.018 kb on + strandat 410.026 kb on - strandat 410.076 kb on + strand, within MPMX20_00395at 410.099 kb on + strand, within MPMX20_00395at 410.099 kb on + strand, within MPMX20_00395at 410.114 kb on + strand, within MPMX20_00395at 410.116 kb on + strand, within MPMX20_00395at 410.151 kb on + strand, within MPMX20_00395at 410.193 kb on + strandat 410.201 kb on - strandat 410.313 kb on - strandat 410.321 kb on - strandat 410.330 kb on - strandat 410.350 kb on + strand, within MPMX20_00396at 410.371 kb on + strand, within MPMX20_00396at 410.406 kb on + strand, within MPMX20_00396at 410.409 kb on - strand, within MPMX20_00396at 410.414 kb on - strand, within MPMX20_00396at 410.418 kb on - strand, within MPMX20_00396at 410.428 kb on + strand, within MPMX20_00396at 410.428 kb on + strand, within MPMX20_00396at 410.513 kb on + strand, within MPMX20_00396at 410.521 kb on - strand, within MPMX20_00396at 410.534 kb on + strand, within MPMX20_00396at 410.537 kb on - strand, within MPMX20_00396at 410.591 kb on - strand, within MPMX20_00396at 410.610 kb on + strand, within MPMX20_00396at 410.668 kb on + strand, within MPMX20_00396at 410.668 kb on + strand, within MPMX20_00396at 410.674 kb on + strand, within MPMX20_00396at 410.674 kb on + strand, within MPMX20_00396at 410.710 kb on + strand, within MPMX20_00396at 410.711 kb on - strand, within MPMX20_00396at 410.786 kb on + strand, within MPMX20_00396at 410.794 kb on - strand, within MPMX20_00396at 410.796 kb on + strand, within MPMX20_00396at 410.869 kb on + strand, within MPMX20_00396at 410.936 kb on - strand, within MPMX20_00396at 411.036 kb on - strand, within MPMX20_00396at 411.040 kb on - strand, within MPMX20_00396at 411.042 kb on + strand, within MPMX20_00396at 411.105 kb on + strand, within MPMX20_00396at 411.105 kb on + strand, within MPMX20_00396at 411.203 kb on + strandat 411.211 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
remove
409,032 + MPMX20_00393 0.21 -0.8
409,063 - MPMX20_00393 0.26 +0.8
409,063 - MPMX20_00393 0.26 -2.1
409,064 - MPMX20_00393 0.26 +0.4
409,074 + MPMX20_00393 0.28 -3.0
409,082 - MPMX20_00393 0.30 +1.7
409,138 - MPMX20_00393 0.40 -0.2
409,169 + MPMX20_00393 0.45 +0.7
409,265 - MPMX20_00393 0.63 -1.8
409,274 + MPMX20_00393 0.64 +1.1
409,276 + MPMX20_00393 0.65 -1.7
409,329 + MPMX20_00393 0.74 +1.5
409,409 - MPMX20_00393 0.89 -2.9
409,485 + -2.6
409,493 - +4.3
409,498 - -1.6
409,564 + MPMX20_00394 0.17 +0.1
409,564 + MPMX20_00394 0.17 -3.1
409,564 + MPMX20_00394 0.17 -0.7
409,576 + MPMX20_00394 0.19 -2.6
409,611 + MPMX20_00394 0.25 -3.1
409,617 - MPMX20_00394 0.26 +0.3
409,642 - MPMX20_00394 0.31 -1.8
409,652 - MPMX20_00394 0.33 +1.9
409,691 + MPMX20_00394 0.39 +3.4
409,809 + MPMX20_00394 0.60 -2.7
409,809 - MPMX20_00394 0.60 -3.9
409,817 - MPMX20_00394 0.62 -1.0
409,829 - MPMX20_00394 0.64 -1.2
409,831 + MPMX20_00394 0.64 -3.5
409,844 + MPMX20_00394 0.66 -2.2
409,885 + MPMX20_00394 0.74 +1.6
409,885 + MPMX20_00394 0.74 -3.2
409,919 - MPMX20_00394 0.79 +2.0
409,953 + MPMX20_00394 0.85 +2.1
410,018 + -1.2
410,026 - -2.7
410,076 + MPMX20_00395 0.41 -2.0
410,099 + MPMX20_00395 0.50 -3.4
410,099 + MPMX20_00395 0.50 -0.6
410,114 + MPMX20_00395 0.57 -0.6
410,116 + MPMX20_00395 0.57 -0.1
410,151 + MPMX20_00395 0.72 -1.6
410,193 + +2.0
410,201 - -1.1
410,313 - +0.9
410,321 - +2.4
410,330 - +0.5
410,350 + MPMX20_00396 0.12 -2.8
410,371 + MPMX20_00396 0.14 +3.1
410,406 + MPMX20_00396 0.18 +1.6
410,409 - MPMX20_00396 0.18 +0.4
410,414 - MPMX20_00396 0.19 -3.1
410,418 - MPMX20_00396 0.19 +1.8
410,428 + MPMX20_00396 0.20 +1.2
410,428 + MPMX20_00396 0.20 +0.5
410,513 + MPMX20_00396 0.29 +0.0
410,521 - MPMX20_00396 0.30 -1.9
410,534 + MPMX20_00396 0.31 -1.2
410,537 - MPMX20_00396 0.31 -1.1
410,591 - MPMX20_00396 0.37 +2.5
410,610 + MPMX20_00396 0.39 -1.1
410,668 + MPMX20_00396 0.45 -2.2
410,668 + MPMX20_00396 0.45 -1.9
410,674 + MPMX20_00396 0.45 +3.5
410,674 + MPMX20_00396 0.45 +0.5
410,710 + MPMX20_00396 0.49 -0.2
410,711 - MPMX20_00396 0.49 -2.3
410,786 + MPMX20_00396 0.57 +0.4
410,794 - MPMX20_00396 0.58 -0.2
410,796 + MPMX20_00396 0.58 +2.4
410,869 + MPMX20_00396 0.66 +0.2
410,936 - MPMX20_00396 0.72 -0.7
411,036 - MPMX20_00396 0.83 +0.4
411,040 - MPMX20_00396 0.83 -2.1
411,042 + MPMX20_00396 0.83 +4.7
411,105 + MPMX20_00396 0.90 +0.5
411,105 + MPMX20_00396 0.90 -0.9
411,203 + -2.6
411,211 - +1.1

Or see this region's nucleotide sequence