Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03395 and MPMX20_03396 are separated by 169 nucleotides MPMX20_03396 and MPMX20_03397 are separated by 156 nucleotides
MPMX20_03395: MPMX20_03395 - Dual-specificity RNA methyltransferase RlmN, at 3,576,082 to 3,577,248
_03395
MPMX20_03396: MPMX20_03396 - Nucleoside diphosphate kinase, at 3,577,418 to 3,577,849
_03396
MPMX20_03397: MPMX20_03397 - Penicillin-binding protein 1C, at 3,578,006 to 3,580,330
_03397
Position (kb)
3577
3578 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3576.418 kb on + strand, within MPMX20_03395 at 3576.418 kb on + strand, within MPMX20_03395 at 3576.426 kb on - strand, within MPMX20_03395 at 3576.585 kb on - strand, within MPMX20_03395 at 3576.609 kb on + strand, within MPMX20_03395 at 3576.638 kb on - strand, within MPMX20_03395 at 3576.638 kb on - strand, within MPMX20_03395 at 3576.737 kb on - strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.784 kb on - strand, within MPMX20_03395 at 3576.784 kb on - strand, within MPMX20_03395 at 3576.784 kb on - strand, within MPMX20_03395 at 3576.795 kb on + strand, within MPMX20_03395 at 3576.817 kb on + strand, within MPMX20_03395 at 3576.870 kb on + strand, within MPMX20_03395 at 3576.878 kb on + strand, within MPMX20_03395 at 3576.881 kb on - strand, within MPMX20_03395 at 3577.019 kb on + strand, within MPMX20_03395 at 3577.033 kb on + strand, within MPMX20_03395 at 3577.062 kb on + strand, within MPMX20_03395 at 3577.102 kb on + strand, within MPMX20_03395 at 3577.115 kb on - strand, within MPMX20_03395 at 3577.165 kb on + strand at 3577.165 kb on + strand at 3577.169 kb on + strand at 3577.221 kb on + strand at 3577.229 kb on - strand at 3577.276 kb on - strand at 3577.282 kb on - strand at 3577.282 kb on - strand at 3577.282 kb on - strand at 3577.282 kb on - strand at 3577.323 kb on - strand at 3577.341 kb on - strand at 3577.343 kb on + strand at 3577.370 kb on - strand at 3577.372 kb on - strand at 3577.411 kb on - strand at 3577.489 kb on + strand, within MPMX20_03396 at 3577.543 kb on + strand, within MPMX20_03396 at 3577.543 kb on + strand, within MPMX20_03396 at 3577.543 kb on + strand, within MPMX20_03396 at 3577.545 kb on + strand, within MPMX20_03396 at 3577.545 kb on + strand, within MPMX20_03396 at 3577.545 kb on + strand, within MPMX20_03396 at 3577.551 kb on - strand, within MPMX20_03396 at 3577.553 kb on - strand, within MPMX20_03396 at 3577.553 kb on - strand, within MPMX20_03396 at 3577.603 kb on - strand, within MPMX20_03396 at 3577.647 kb on - strand, within MPMX20_03396 at 3577.647 kb on - strand, within MPMX20_03396 at 3577.653 kb on + strand, within MPMX20_03396 at 3577.727 kb on + strand, within MPMX20_03396 at 3577.858 kb on + strand at 3577.866 kb on - strand at 3577.895 kb on - strand at 3577.980 kb on + strand at 3577.980 kb on + strand at 3577.988 kb on - strand at 3578.032 kb on + strand at 3578.094 kb on + strand at 3578.153 kb on + strand at 3578.248 kb on + strand, within MPMX20_03397 at 3578.248 kb on + strand, within MPMX20_03397 at 3578.261 kb on - strand, within MPMX20_03397 at 3578.278 kb on - strand, within MPMX20_03397 at 3578.299 kb on + strand, within MPMX20_03397 at 3578.365 kb on - strand, within MPMX20_03397 at 3578.385 kb on - strand, within MPMX20_03397 at 3578.638 kb on + strand, within MPMX20_03397 at 3578.684 kb on + strand, within MPMX20_03397 at 3578.690 kb on - strand, within MPMX20_03397 at 3578.749 kb on + strand, within MPMX20_03397 at 3578.755 kb on + strand, within MPMX20_03397 at 3578.811 kb on + strand, within MPMX20_03397 at 3578.816 kb on + strand, within MPMX20_03397
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 3,576,418 + MPMX20_03395 0.29 -0.8 3,576,418 + MPMX20_03395 0.29 -0.4 3,576,426 - MPMX20_03395 0.29 -2.5 3,576,585 - MPMX20_03395 0.43 +0.3 3,576,609 + MPMX20_03395 0.45 +0.5 3,576,638 - MPMX20_03395 0.48 +0.2 3,576,638 - MPMX20_03395 0.48 -0.2 3,576,737 - MPMX20_03395 0.56 -0.5 3,576,776 + MPMX20_03395 0.59 +1.0 3,576,776 + MPMX20_03395 0.59 +0.3 3,576,776 + MPMX20_03395 0.59 +2.2 3,576,776 + MPMX20_03395 0.59 +1.2 3,576,776 + MPMX20_03395 0.59 -1.6 3,576,776 + MPMX20_03395 0.59 -0.1 3,576,776 + MPMX20_03395 0.59 +2.6 3,576,784 - MPMX20_03395 0.60 -0.3 3,576,784 - MPMX20_03395 0.60 +0.3 3,576,784 - MPMX20_03395 0.60 -0.2 3,576,795 + MPMX20_03395 0.61 +1.2 3,576,817 + MPMX20_03395 0.63 -0.1 3,576,870 + MPMX20_03395 0.68 -0.5 3,576,878 + MPMX20_03395 0.68 -0.1 3,576,881 - MPMX20_03395 0.68 +0.2 3,577,019 + MPMX20_03395 0.80 -1.5 3,577,033 + MPMX20_03395 0.81 +0.6 3,577,062 + MPMX20_03395 0.84 -0.7 3,577,102 + MPMX20_03395 0.87 +0.4 3,577,115 - MPMX20_03395 0.89 -0.1 3,577,165 + +0.0 3,577,165 + -0.4 3,577,169 + -0.0 3,577,221 + -0.4 3,577,229 - -0.2 3,577,276 - -0.4 3,577,282 - -2.5 3,577,282 - -0.3 3,577,282 - -0.1 3,577,282 - -0.9 3,577,323 - +0.6 3,577,341 - -1.8 3,577,343 + -1.9 3,577,370 - -0.8 3,577,372 - +0.2 3,577,411 - -0.7 3,577,489 + MPMX20_03396 0.16 -4.0 3,577,543 + MPMX20_03396 0.29 -2.5 3,577,543 + MPMX20_03396 0.29 -1.7 3,577,543 + MPMX20_03396 0.29 -3.1 3,577,545 + MPMX20_03396 0.29 -2.5 3,577,545 + MPMX20_03396 0.29 -2.5 3,577,545 + MPMX20_03396 0.29 -2.2 3,577,551 - MPMX20_03396 0.31 -1.4 3,577,553 - MPMX20_03396 0.31 -2.6 3,577,553 - MPMX20_03396 0.31 -0.7 3,577,603 - MPMX20_03396 0.43 -2.2 3,577,647 - MPMX20_03396 0.53 -2.7 3,577,647 - MPMX20_03396 0.53 -3.1 3,577,653 + MPMX20_03396 0.54 -3.8 3,577,727 + MPMX20_03396 0.72 -1.8 3,577,858 + -1.9 3,577,866 - -0.3 3,577,895 - +1.4 3,577,980 + +0.2 3,577,980 + +0.8 3,577,988 - -2.4 3,578,032 + -0.6 3,578,094 + +0.6 3,578,153 + +0.2 3,578,248 + MPMX20_03397 0.10 +1.2 3,578,248 + MPMX20_03397 0.10 -1.8 3,578,261 - MPMX20_03397 0.11 -0.0 3,578,278 - MPMX20_03397 0.12 -1.1 3,578,299 + MPMX20_03397 0.13 -1.5 3,578,365 - MPMX20_03397 0.15 +0.8 3,578,385 - MPMX20_03397 0.16 +1.3 3,578,638 + MPMX20_03397 0.27 +1.6 3,578,684 + MPMX20_03397 0.29 +0.4 3,578,690 - MPMX20_03397 0.29 +0.3 3,578,749 + MPMX20_03397 0.32 +0.8 3,578,755 + MPMX20_03397 0.32 -0.4 3,578,811 + MPMX20_03397 0.35 -0.1 3,578,816 + MPMX20_03397 0.35 -0.7
Or see this region's nucleotide sequence