Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04567 and MPMX20_04568 are separated by 44 nucleotides MPMX20_04568 and MPMX20_04569 are separated by 104 nucleotides
MPMX20_04567: MPMX20_04567 - Melibiose permease, at 4,778,747 to 4,780,012
_04567
MPMX20_04568: MPMX20_04568 - Alpha-galactosidase, at 4,780,057 to 4,782,180
_04568
MPMX20_04569: MPMX20_04569 - HTH-type transcriptional regulator RafR, at 4,782,285 to 4,783,280
_04569
Position (kb)
4780
4781
4782
4783 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16 at 4779.069 kb on - strand, within MPMX20_04567 at 4779.154 kb on + strand, within MPMX20_04567 at 4779.299 kb on + strand, within MPMX20_04567 at 4779.307 kb on - strand, within MPMX20_04567 at 4779.336 kb on - strand, within MPMX20_04567 at 4779.352 kb on + strand, within MPMX20_04567 at 4779.361 kb on - strand, within MPMX20_04567 at 4779.361 kb on - strand, within MPMX20_04567 at 4779.361 kb on - strand, within MPMX20_04567 at 4779.361 kb on - strand, within MPMX20_04567 at 4779.402 kb on + strand, within MPMX20_04567 at 4779.402 kb on + strand, within MPMX20_04567 at 4779.402 kb on + strand, within MPMX20_04567 at 4779.410 kb on - strand, within MPMX20_04567 at 4779.425 kb on - strand, within MPMX20_04567 at 4779.515 kb on - strand, within MPMX20_04567 at 4779.541 kb on + strand, within MPMX20_04567 at 4779.541 kb on + strand, within MPMX20_04567 at 4779.549 kb on - strand, within MPMX20_04567 at 4779.593 kb on + strand, within MPMX20_04567 at 4779.593 kb on + strand, within MPMX20_04567 at 4779.617 kb on + strand, within MPMX20_04567 at 4779.625 kb on - strand, within MPMX20_04567 at 4779.746 kb on + strand, within MPMX20_04567 at 4779.808 kb on + strand, within MPMX20_04567 at 4779.824 kb on - strand, within MPMX20_04567 at 4779.875 kb on + strand, within MPMX20_04567 at 4779.876 kb on - strand, within MPMX20_04567 at 4779.883 kb on - strand, within MPMX20_04567 at 4779.966 kb on - strand at 4779.983 kb on + strand at 4780.048 kb on - strand at 4780.054 kb on - strand at 4780.183 kb on - strand at 4780.202 kb on + strand at 4780.217 kb on - strand at 4780.343 kb on - strand, within MPMX20_04568 at 4780.352 kb on + strand, within MPMX20_04568 at 4780.360 kb on - strand, within MPMX20_04568 at 4780.360 kb on - strand, within MPMX20_04568 at 4780.390 kb on - strand, within MPMX20_04568 at 4780.404 kb on - strand, within MPMX20_04568 at 4780.404 kb on - strand, within MPMX20_04568 at 4780.406 kb on - strand, within MPMX20_04568 at 4780.440 kb on + strand, within MPMX20_04568 at 4780.453 kb on - strand, within MPMX20_04568 at 4780.453 kb on - strand, within MPMX20_04568 at 4780.468 kb on + strand, within MPMX20_04568 at 4780.470 kb on + strand, within MPMX20_04568 at 4780.499 kb on - strand, within MPMX20_04568 at 4780.502 kb on + strand, within MPMX20_04568 at 4780.640 kb on + strand, within MPMX20_04568 at 4780.693 kb on + strand, within MPMX20_04568 at 4780.693 kb on + strand, within MPMX20_04568 at 4780.693 kb on + strand, within MPMX20_04568 at 4780.701 kb on - strand, within MPMX20_04568 at 4780.701 kb on - strand, within MPMX20_04568 at 4780.760 kb on - strand, within MPMX20_04568 at 4780.773 kb on + strand, within MPMX20_04568 at 4780.816 kb on - strand, within MPMX20_04568 at 4780.839 kb on + strand, within MPMX20_04568 at 4780.863 kb on + strand, within MPMX20_04568 at 4780.871 kb on - strand, within MPMX20_04568 at 4780.975 kb on - strand, within MPMX20_04568 at 4781.020 kb on + strand, within MPMX20_04568 at 4781.025 kb on + strand, within MPMX20_04568 at 4781.114 kb on - strand, within MPMX20_04568 at 4781.149 kb on + strand, within MPMX20_04568 at 4781.283 kb on - strand, within MPMX20_04568 at 4781.296 kb on - strand, within MPMX20_04568 at 4781.301 kb on - strand, within MPMX20_04568 at 4781.334 kb on - strand, within MPMX20_04568 at 4781.351 kb on + strand, within MPMX20_04568 at 4781.372 kb on - strand, within MPMX20_04568 at 4781.382 kb on - strand, within MPMX20_04568 at 4781.406 kb on + strand, within MPMX20_04568 at 4781.422 kb on - strand, within MPMX20_04568 at 4781.465 kb on - strand, within MPMX20_04568 at 4781.522 kb on - strand, within MPMX20_04568 at 4781.538 kb on + strand, within MPMX20_04568 at 4781.546 kb on + strand, within MPMX20_04568 at 4781.546 kb on + strand, within MPMX20_04568 at 4781.546 kb on + strand, within MPMX20_04568 at 4781.552 kb on - strand, within MPMX20_04568 at 4781.554 kb on - strand, within MPMX20_04568 at 4781.850 kb on - strand, within MPMX20_04568 at 4781.850 kb on - strand, within MPMX20_04568 at 4781.881 kb on + strand, within MPMX20_04568 at 4781.887 kb on + strand, within MPMX20_04568 at 4781.907 kb on - strand, within MPMX20_04568 at 4781.907 kb on - strand, within MPMX20_04568 at 4781.935 kb on + strand, within MPMX20_04568 at 4781.935 kb on + strand, within MPMX20_04568 at 4781.935 kb on + strand, within MPMX20_04568 at 4781.958 kb on - strand, within MPMX20_04568 at 4782.101 kb on - strand at 4782.283 kb on + strand at 4782.309 kb on - strand at 4782.326 kb on + strand at 4782.333 kb on - strand at 4782.439 kb on + strand, within MPMX20_04569 at 4782.457 kb on - strand, within MPMX20_04569 at 4782.495 kb on + strand, within MPMX20_04569 at 4782.522 kb on + strand, within MPMX20_04569 at 4782.541 kb on + strand, within MPMX20_04569 at 4782.541 kb on + strand, within MPMX20_04569 at 4782.541 kb on + strand, within MPMX20_04569 at 4782.551 kb on + strand, within MPMX20_04569 at 4782.661 kb on + strand, within MPMX20_04569 at 4782.698 kb on + strand, within MPMX20_04569 at 4782.731 kb on + strand, within MPMX20_04569 at 4782.812 kb on + strand, within MPMX20_04569 at 4782.833 kb on + strand, within MPMX20_04569 at 4782.837 kb on - strand, within MPMX20_04569 at 4782.876 kb on - strand, within MPMX20_04569 at 4782.936 kb on + strand, within MPMX20_04569 at 4782.944 kb on - strand, within MPMX20_04569 at 4782.944 kb on - strand, within MPMX20_04569 at 4782.958 kb on - strand, within MPMX20_04569 at 4783.059 kb on + strand, within MPMX20_04569 at 4783.078 kb on - strand, within MPMX20_04569 at 4783.094 kb on + strand, within MPMX20_04569 at 4783.146 kb on - strand, within MPMX20_04569
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 4,779,069 - MPMX20_04567 0.25 -0.1 4,779,154 + MPMX20_04567 0.32 -0.7 4,779,299 + MPMX20_04567 0.44 +0.2 4,779,307 - MPMX20_04567 0.44 +0.0 4,779,336 - MPMX20_04567 0.47 -0.1 4,779,352 + MPMX20_04567 0.48 -0.1 4,779,361 - MPMX20_04567 0.48 -1.2 4,779,361 - MPMX20_04567 0.48 -0.3 4,779,361 - MPMX20_04567 0.48 -1.9 4,779,361 - MPMX20_04567 0.48 -1.2 4,779,402 + MPMX20_04567 0.52 +0.3 4,779,402 + MPMX20_04567 0.52 -0.5 4,779,402 + MPMX20_04567 0.52 -1.5 4,779,410 - MPMX20_04567 0.52 -0.8 4,779,425 - MPMX20_04567 0.54 -1.6 4,779,515 - MPMX20_04567 0.61 +0.5 4,779,541 + MPMX20_04567 0.63 -1.6 4,779,541 + MPMX20_04567 0.63 +0.9 4,779,549 - MPMX20_04567 0.63 +0.6 4,779,593 + MPMX20_04567 0.67 -0.5 4,779,593 + MPMX20_04567 0.67 -1.1 4,779,617 + MPMX20_04567 0.69 -2.1 4,779,625 - MPMX20_04567 0.69 +0.5 4,779,746 + MPMX20_04567 0.79 +1.1 4,779,808 + MPMX20_04567 0.84 -1.1 4,779,824 - MPMX20_04567 0.85 -1.3 4,779,875 + MPMX20_04567 0.89 +0.0 4,779,876 - MPMX20_04567 0.89 +0.2 4,779,883 - MPMX20_04567 0.90 -2.7 4,779,966 - -2.7 4,779,983 + -2.0 4,780,048 - +11.5 4,780,054 - +12.9 4,780,183 - +15.4 4,780,202 + +1.6 4,780,217 - +15.9 4,780,343 - MPMX20_04568 0.13 +8.0 4,780,352 + MPMX20_04568 0.14 +1.5 4,780,360 - MPMX20_04568 0.14 +11.2 4,780,360 - MPMX20_04568 0.14 +10.5 4,780,390 - MPMX20_04568 0.16 +11.0 4,780,404 - MPMX20_04568 0.16 +8.5 4,780,404 - MPMX20_04568 0.16 +10.9 4,780,406 - MPMX20_04568 0.16 +9.7 4,780,440 + MPMX20_04568 0.18 +2.8 4,780,453 - MPMX20_04568 0.19 +10.8 4,780,453 - MPMX20_04568 0.19 +11.5 4,780,468 + MPMX20_04568 0.19 +1.7 4,780,470 + MPMX20_04568 0.19 +0.9 4,780,499 - MPMX20_04568 0.21 +11.8 4,780,502 + MPMX20_04568 0.21 +0.5 4,780,640 + MPMX20_04568 0.27 +1.6 4,780,693 + MPMX20_04568 0.30 -0.6 4,780,693 + MPMX20_04568 0.30 -2.4 4,780,693 + MPMX20_04568 0.30 +0.6 4,780,701 - MPMX20_04568 0.30 +4.2 4,780,701 - MPMX20_04568 0.30 +6.3 4,780,760 - MPMX20_04568 0.33 +3.6 4,780,773 + MPMX20_04568 0.34 -2.8 4,780,816 - MPMX20_04568 0.36 +4.3 4,780,839 + MPMX20_04568 0.37 -1.4 4,780,863 + MPMX20_04568 0.38 -1.5 4,780,871 - MPMX20_04568 0.38 +4.7 4,780,975 - MPMX20_04568 0.43 +3.6 4,781,020 + MPMX20_04568 0.45 -0.4 4,781,025 + MPMX20_04568 0.46 -1.0 4,781,114 - MPMX20_04568 0.50 +6.1 4,781,149 + MPMX20_04568 0.51 +1.1 4,781,283 - MPMX20_04568 0.58 +1.8 4,781,296 - MPMX20_04568 0.58 +3.5 4,781,301 - MPMX20_04568 0.59 +3.5 4,781,334 - MPMX20_04568 0.60 +2.5 4,781,351 + MPMX20_04568 0.61 +0.5 4,781,372 - MPMX20_04568 0.62 +2.0 4,781,382 - MPMX20_04568 0.62 +2.5 4,781,406 + MPMX20_04568 0.64 +0.2 4,781,422 - MPMX20_04568 0.64 +0.5 4,781,465 - MPMX20_04568 0.66 +1.3 4,781,522 - MPMX20_04568 0.69 +0.8 4,781,538 + MPMX20_04568 0.70 +0.7 4,781,546 + MPMX20_04568 0.70 -1.1 4,781,546 + MPMX20_04568 0.70 +0.4 4,781,546 + MPMX20_04568 0.70 -0.3 4,781,552 - MPMX20_04568 0.70 +2.8 4,781,554 - MPMX20_04568 0.70 +3.5 4,781,850 - MPMX20_04568 0.84 +1.2 4,781,850 - MPMX20_04568 0.84 +2.2 4,781,881 + MPMX20_04568 0.86 +1.0 4,781,887 + MPMX20_04568 0.86 -0.5 4,781,907 - MPMX20_04568 0.87 +0.6 4,781,907 - MPMX20_04568 0.87 -1.7 4,781,935 + MPMX20_04568 0.88 -2.6 4,781,935 + MPMX20_04568 0.88 -0.1 4,781,935 + MPMX20_04568 0.88 -0.3 4,781,958 - MPMX20_04568 0.90 +0.5 4,782,101 - -0.2 4,782,283 + +2.3 4,782,309 - +4.7 4,782,326 + +4.5 4,782,333 - +4.1 4,782,439 + MPMX20_04569 0.15 +4.2 4,782,457 - MPMX20_04569 0.17 +4.5 4,782,495 + MPMX20_04569 0.21 +3.8 4,782,522 + MPMX20_04569 0.24 +4.2 4,782,541 + MPMX20_04569 0.26 +3.7 4,782,541 + MPMX20_04569 0.26 +3.5 4,782,541 + MPMX20_04569 0.26 +3.7 4,782,551 + MPMX20_04569 0.27 +1.9 4,782,661 + MPMX20_04569 0.38 +4.6 4,782,698 + MPMX20_04569 0.41 +2.0 4,782,731 + MPMX20_04569 0.45 -0.1 4,782,812 + MPMX20_04569 0.53 +4.8 4,782,833 + MPMX20_04569 0.55 +4.6 4,782,837 - MPMX20_04569 0.55 +4.2 4,782,876 - MPMX20_04569 0.59 +4.1 4,782,936 + MPMX20_04569 0.65 +4.0 4,782,944 - MPMX20_04569 0.66 +3.0 4,782,944 - MPMX20_04569 0.66 +4.9 4,782,958 - MPMX20_04569 0.68 +4.2 4,783,059 + MPMX20_04569 0.78 +4.9 4,783,078 - MPMX20_04569 0.80 +5.0 4,783,094 + MPMX20_04569 0.81 +4.1 4,783,146 - MPMX20_04569 0.86 +2.4
Or see this region's nucleotide sequence