Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04565 and MPMX20_04566 are separated by 27 nucleotides MPMX20_04566 and MPMX20_04567 are separated by 37 nucleotides MPMX20_04567 and MPMX20_04568 are separated by 44 nucleotides
MPMX20_04565: MPMX20_04565 - Rhamnulose-1-phosphate aldolase, at 4,777,537 to 4,778,367
_04565
MPMX20_04566: MPMX20_04566 - L-rhamnose mutarotase, at 4,778,395 to 4,778,709
_04566
MPMX20_04567: MPMX20_04567 - Melibiose permease, at 4,778,747 to 4,780,012
_04567
MPMX20_04568: MPMX20_04568 - Alpha-galactosidase, at 4,780,057 to 4,782,180
_04568
Position (kb)
4778
4779
4780
4781 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16 at 4777.802 kb on + strand, within MPMX20_04565 at 4777.810 kb on - strand, within MPMX20_04565 at 4777.812 kb on + strand, within MPMX20_04565 at 4777.837 kb on + strand, within MPMX20_04565 at 4777.841 kb on + strand, within MPMX20_04565 at 4777.841 kb on + strand, within MPMX20_04565 at 4777.845 kb on - strand, within MPMX20_04565 at 4777.876 kb on - strand, within MPMX20_04565 at 4777.880 kb on + strand, within MPMX20_04565 at 4777.880 kb on + strand, within MPMX20_04565 at 4777.888 kb on - strand, within MPMX20_04565 at 4777.888 kb on - strand, within MPMX20_04565 at 4777.888 kb on - strand, within MPMX20_04565 at 4777.899 kb on + strand, within MPMX20_04565 at 4777.899 kb on + strand, within MPMX20_04565 at 4777.899 kb on + strand, within MPMX20_04565 at 4777.933 kb on - strand, within MPMX20_04565 at 4777.951 kb on + strand, within MPMX20_04565 at 4777.981 kb on + strand, within MPMX20_04565 at 4777.989 kb on - strand, within MPMX20_04565 at 4778.085 kb on + strand, within MPMX20_04565 at 4778.116 kb on + strand, within MPMX20_04565 at 4778.176 kb on + strand, within MPMX20_04565 at 4778.176 kb on + strand, within MPMX20_04565 at 4778.184 kb on - strand, within MPMX20_04565 at 4778.184 kb on - strand, within MPMX20_04565 at 4778.220 kb on - strand, within MPMX20_04565 at 4778.245 kb on - strand, within MPMX20_04565 at 4778.245 kb on - strand, within MPMX20_04565 at 4778.281 kb on - strand, within MPMX20_04565 at 4778.415 kb on - strand at 4778.429 kb on - strand, within MPMX20_04566 at 4778.457 kb on + strand, within MPMX20_04566 at 4778.464 kb on - strand, within MPMX20_04566 at 4778.465 kb on - strand, within MPMX20_04566 at 4778.471 kb on + strand, within MPMX20_04566 at 4778.479 kb on - strand, within MPMX20_04566 at 4778.504 kb on - strand, within MPMX20_04566 at 4778.511 kb on + strand, within MPMX20_04566 at 4778.511 kb on + strand, within MPMX20_04566 at 4778.511 kb on + strand, within MPMX20_04566 at 4778.519 kb on - strand, within MPMX20_04566 at 4778.636 kb on - strand, within MPMX20_04566 at 4778.675 kb on + strand, within MPMX20_04566 at 4778.703 kb on + strand at 4778.703 kb on + strand at 4778.705 kb on + strand at 4778.711 kb on + strand at 4778.757 kb on - strand at 4778.808 kb on - strand at 4778.816 kb on - strand at 4778.860 kb on + strand at 4778.868 kb on - strand at 4779.041 kb on + strand, within MPMX20_04567 at 4779.069 kb on - strand, within MPMX20_04567 at 4779.154 kb on + strand, within MPMX20_04567 at 4779.299 kb on + strand, within MPMX20_04567 at 4779.307 kb on - strand, within MPMX20_04567 at 4779.336 kb on - strand, within MPMX20_04567 at 4779.352 kb on + strand, within MPMX20_04567 at 4779.361 kb on - strand, within MPMX20_04567 at 4779.361 kb on - strand, within MPMX20_04567 at 4779.361 kb on - strand, within MPMX20_04567 at 4779.361 kb on - strand, within MPMX20_04567 at 4779.402 kb on + strand, within MPMX20_04567 at 4779.402 kb on + strand, within MPMX20_04567 at 4779.402 kb on + strand, within MPMX20_04567 at 4779.410 kb on - strand, within MPMX20_04567 at 4779.425 kb on - strand, within MPMX20_04567 at 4779.515 kb on - strand, within MPMX20_04567 at 4779.541 kb on + strand, within MPMX20_04567 at 4779.541 kb on + strand, within MPMX20_04567 at 4779.549 kb on - strand, within MPMX20_04567 at 4779.593 kb on + strand, within MPMX20_04567 at 4779.593 kb on + strand, within MPMX20_04567 at 4779.617 kb on + strand, within MPMX20_04567 at 4779.625 kb on - strand, within MPMX20_04567 at 4779.746 kb on + strand, within MPMX20_04567 at 4779.808 kb on + strand, within MPMX20_04567 at 4779.824 kb on - strand, within MPMX20_04567 at 4779.875 kb on + strand, within MPMX20_04567 at 4779.876 kb on - strand, within MPMX20_04567 at 4779.883 kb on - strand, within MPMX20_04567 at 4779.966 kb on - strand at 4779.983 kb on + strand at 4780.048 kb on - strand at 4780.054 kb on - strand at 4780.183 kb on - strand at 4780.202 kb on + strand at 4780.217 kb on - strand at 4780.343 kb on - strand, within MPMX20_04568 at 4780.352 kb on + strand, within MPMX20_04568 at 4780.360 kb on - strand, within MPMX20_04568 at 4780.360 kb on - strand, within MPMX20_04568 at 4780.390 kb on - strand, within MPMX20_04568 at 4780.404 kb on - strand, within MPMX20_04568 at 4780.404 kb on - strand, within MPMX20_04568 at 4780.406 kb on - strand, within MPMX20_04568 at 4780.440 kb on + strand, within MPMX20_04568 at 4780.453 kb on - strand, within MPMX20_04568 at 4780.453 kb on - strand, within MPMX20_04568 at 4780.468 kb on + strand, within MPMX20_04568 at 4780.470 kb on + strand, within MPMX20_04568 at 4780.499 kb on - strand, within MPMX20_04568 at 4780.502 kb on + strand, within MPMX20_04568 at 4780.640 kb on + strand, within MPMX20_04568 at 4780.693 kb on + strand, within MPMX20_04568 at 4780.693 kb on + strand, within MPMX20_04568 at 4780.693 kb on + strand, within MPMX20_04568 at 4780.701 kb on - strand, within MPMX20_04568 at 4780.701 kb on - strand, within MPMX20_04568 at 4780.760 kb on - strand, within MPMX20_04568 at 4780.773 kb on + strand, within MPMX20_04568 at 4780.816 kb on - strand, within MPMX20_04568 at 4780.839 kb on + strand, within MPMX20_04568 at 4780.863 kb on + strand, within MPMX20_04568 at 4780.871 kb on - strand, within MPMX20_04568 at 4780.975 kb on - strand, within MPMX20_04568
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 4,777,802 + MPMX20_04565 0.32 +0.7 4,777,810 - MPMX20_04565 0.33 -1.0 4,777,812 + MPMX20_04565 0.33 +0.9 4,777,837 + MPMX20_04565 0.36 -0.3 4,777,841 + MPMX20_04565 0.37 +0.6 4,777,841 + MPMX20_04565 0.37 -0.5 4,777,845 - MPMX20_04565 0.37 -0.8 4,777,876 - MPMX20_04565 0.41 -0.8 4,777,880 + MPMX20_04565 0.41 -1.1 4,777,880 + MPMX20_04565 0.41 +0.3 4,777,888 - MPMX20_04565 0.42 +0.5 4,777,888 - MPMX20_04565 0.42 +0.5 4,777,888 - MPMX20_04565 0.42 -0.3 4,777,899 + MPMX20_04565 0.44 +0.5 4,777,899 + MPMX20_04565 0.44 +0.4 4,777,899 + MPMX20_04565 0.44 +2.5 4,777,933 - MPMX20_04565 0.48 +0.5 4,777,951 + MPMX20_04565 0.50 +1.5 4,777,981 + MPMX20_04565 0.53 -0.5 4,777,989 - MPMX20_04565 0.54 +0.7 4,778,085 + MPMX20_04565 0.66 +1.2 4,778,116 + MPMX20_04565 0.70 -0.4 4,778,176 + MPMX20_04565 0.77 +0.9 4,778,176 + MPMX20_04565 0.77 -1.4 4,778,184 - MPMX20_04565 0.78 +0.2 4,778,184 - MPMX20_04565 0.78 -1.1 4,778,220 - MPMX20_04565 0.82 +1.4 4,778,245 - MPMX20_04565 0.85 +0.0 4,778,245 - MPMX20_04565 0.85 -0.0 4,778,281 - MPMX20_04565 0.90 +2.5 4,778,415 - +0.3 4,778,429 - MPMX20_04566 0.11 +0.5 4,778,457 + MPMX20_04566 0.20 -0.7 4,778,464 - MPMX20_04566 0.22 +0.6 4,778,465 - MPMX20_04566 0.22 -1.2 4,778,471 + MPMX20_04566 0.24 -1.4 4,778,479 - MPMX20_04566 0.27 -0.8 4,778,504 - MPMX20_04566 0.35 -0.7 4,778,511 + MPMX20_04566 0.37 -2.2 4,778,511 + MPMX20_04566 0.37 -0.7 4,778,511 + MPMX20_04566 0.37 -0.6 4,778,519 - MPMX20_04566 0.39 +0.9 4,778,636 - MPMX20_04566 0.77 +2.9 4,778,675 + MPMX20_04566 0.89 +2.9 4,778,703 + +0.8 4,778,703 + -0.9 4,778,705 + -0.2 4,778,711 + +0.8 4,778,757 - +0.2 4,778,808 - -0.1 4,778,816 - +0.3 4,778,860 + -0.0 4,778,868 - -2.3 4,779,041 + MPMX20_04567 0.23 -1.4 4,779,069 - MPMX20_04567 0.25 -0.1 4,779,154 + MPMX20_04567 0.32 -0.7 4,779,299 + MPMX20_04567 0.44 +0.2 4,779,307 - MPMX20_04567 0.44 +0.0 4,779,336 - MPMX20_04567 0.47 -0.1 4,779,352 + MPMX20_04567 0.48 -0.1 4,779,361 - MPMX20_04567 0.48 -1.2 4,779,361 - MPMX20_04567 0.48 -0.3 4,779,361 - MPMX20_04567 0.48 -1.9 4,779,361 - MPMX20_04567 0.48 -1.2 4,779,402 + MPMX20_04567 0.52 +0.3 4,779,402 + MPMX20_04567 0.52 -0.5 4,779,402 + MPMX20_04567 0.52 -1.5 4,779,410 - MPMX20_04567 0.52 -0.8 4,779,425 - MPMX20_04567 0.54 -1.6 4,779,515 - MPMX20_04567 0.61 +0.5 4,779,541 + MPMX20_04567 0.63 -1.6 4,779,541 + MPMX20_04567 0.63 +0.9 4,779,549 - MPMX20_04567 0.63 +0.6 4,779,593 + MPMX20_04567 0.67 -0.5 4,779,593 + MPMX20_04567 0.67 -1.1 4,779,617 + MPMX20_04567 0.69 -2.1 4,779,625 - MPMX20_04567 0.69 +0.5 4,779,746 + MPMX20_04567 0.79 +1.1 4,779,808 + MPMX20_04567 0.84 -1.1 4,779,824 - MPMX20_04567 0.85 -1.3 4,779,875 + MPMX20_04567 0.89 +0.0 4,779,876 - MPMX20_04567 0.89 +0.2 4,779,883 - MPMX20_04567 0.90 -2.7 4,779,966 - -2.7 4,779,983 + -2.0 4,780,048 - +11.5 4,780,054 - +12.9 4,780,183 - +15.4 4,780,202 + +1.6 4,780,217 - +15.9 4,780,343 - MPMX20_04568 0.13 +8.0 4,780,352 + MPMX20_04568 0.14 +1.5 4,780,360 - MPMX20_04568 0.14 +11.2 4,780,360 - MPMX20_04568 0.14 +10.5 4,780,390 - MPMX20_04568 0.16 +11.0 4,780,404 - MPMX20_04568 0.16 +8.5 4,780,404 - MPMX20_04568 0.16 +10.9 4,780,406 - MPMX20_04568 0.16 +9.7 4,780,440 + MPMX20_04568 0.18 +2.8 4,780,453 - MPMX20_04568 0.19 +10.8 4,780,453 - MPMX20_04568 0.19 +11.5 4,780,468 + MPMX20_04568 0.19 +1.7 4,780,470 + MPMX20_04568 0.19 +0.9 4,780,499 - MPMX20_04568 0.21 +11.8 4,780,502 + MPMX20_04568 0.21 +0.5 4,780,640 + MPMX20_04568 0.27 +1.6 4,780,693 + MPMX20_04568 0.30 -0.6 4,780,693 + MPMX20_04568 0.30 -2.4 4,780,693 + MPMX20_04568 0.30 +0.6 4,780,701 - MPMX20_04568 0.30 +4.2 4,780,701 - MPMX20_04568 0.30 +6.3 4,780,760 - MPMX20_04568 0.33 +3.6 4,780,773 + MPMX20_04568 0.34 -2.8 4,780,816 - MPMX20_04568 0.36 +4.3 4,780,839 + MPMX20_04568 0.37 -1.4 4,780,863 + MPMX20_04568 0.38 -1.5 4,780,871 - MPMX20_04568 0.38 +4.7 4,780,975 - MPMX20_04568 0.43 +3.6
Or see this region's nucleotide sequence