Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00460

Experiment: Beta-Lactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00458 and MPMX20_00459 are separated by 192 nucleotidesMPMX20_00459 and MPMX20_00460 are separated by 38 nucleotidesMPMX20_00460 and MPMX20_00461 are separated by 69 nucleotidesMPMX20_00461 and MPMX20_00462 are separated by 67 nucleotides MPMX20_00458: MPMX20_00458 - Adenylosuccinate synthetase, at 472,454 to 473,794 _00458 MPMX20_00459: MPMX20_00459 - HTH-type transcriptional repressor NsrR, at 473,987 to 474,412 _00459 MPMX20_00460: MPMX20_00460 - Ribonuclease R, at 474,451 to 476,892 _00460 MPMX20_00461: MPMX20_00461 - 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB, at 476,962 to 477,696 _00461 MPMX20_00462: MPMX20_00462 - Proline/betaine transporter, at 477,764 to 479,038 _00462 Position (kb) 474 475 476 477Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 473.804 kb on + strandat 473.804 kb on + strandat 473.812 kb on - strandat 473.812 kb on - strandat 473.944 kb on + strandat 474.008 kb on + strandat 474.028 kb on + strandat 474.028 kb on + strandat 474.028 kb on + strandat 474.028 kb on + strandat 474.036 kb on - strand, within MPMX20_00459at 474.085 kb on + strand, within MPMX20_00459at 474.085 kb on + strand, within MPMX20_00459at 474.085 kb on + strand, within MPMX20_00459at 474.085 kb on + strand, within MPMX20_00459at 474.085 kb on + strand, within MPMX20_00459at 474.085 kb on + strand, within MPMX20_00459at 474.085 kb on + strand, within MPMX20_00459at 474.085 kb on + strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.093 kb on - strand, within MPMX20_00459at 474.130 kb on + strand, within MPMX20_00459at 474.149 kb on - strand, within MPMX20_00459at 474.187 kb on + strand, within MPMX20_00459at 474.212 kb on - strand, within MPMX20_00459at 474.212 kb on - strand, within MPMX20_00459at 474.294 kb on + strand, within MPMX20_00459at 474.356 kb on - strand, within MPMX20_00459at 474.384 kb on - strandat 474.428 kb on + strandat 474.510 kb on - strandat 474.529 kb on - strandat 474.603 kb on + strandat 474.606 kb on - strandat 474.692 kb on + strandat 474.741 kb on - strand, within MPMX20_00460at 474.768 kb on + strand, within MPMX20_00460at 474.782 kb on + strand, within MPMX20_00460at 474.790 kb on - strand, within MPMX20_00460at 474.822 kb on - strand, within MPMX20_00460at 474.854 kb on - strand, within MPMX20_00460at 474.882 kb on - strand, within MPMX20_00460at 474.888 kb on + strand, within MPMX20_00460at 474.939 kb on - strand, within MPMX20_00460at 474.994 kb on + strand, within MPMX20_00460at 474.996 kb on + strand, within MPMX20_00460at 475.046 kb on + strand, within MPMX20_00460at 475.205 kb on + strand, within MPMX20_00460at 475.386 kb on + strand, within MPMX20_00460at 475.389 kb on - strand, within MPMX20_00460at 475.411 kb on - strand, within MPMX20_00460at 475.478 kb on + strand, within MPMX20_00460at 475.484 kb on + strand, within MPMX20_00460at 475.486 kb on - strand, within MPMX20_00460at 475.500 kb on + strand, within MPMX20_00460at 475.500 kb on + strand, within MPMX20_00460at 475.570 kb on + strand, within MPMX20_00460at 475.577 kb on + strand, within MPMX20_00460at 475.580 kb on + strand, within MPMX20_00460at 475.588 kb on + strand, within MPMX20_00460at 475.596 kb on - strand, within MPMX20_00460at 475.596 kb on - strand, within MPMX20_00460at 475.598 kb on + strand, within MPMX20_00460at 475.613 kb on - strand, within MPMX20_00460at 475.614 kb on - strand, within MPMX20_00460at 475.618 kb on - strand, within MPMX20_00460at 475.678 kb on + strand, within MPMX20_00460at 475.710 kb on - strand, within MPMX20_00460at 475.769 kb on - strand, within MPMX20_00460at 475.787 kb on + strand, within MPMX20_00460at 475.792 kb on + strand, within MPMX20_00460at 475.811 kb on - strand, within MPMX20_00460at 475.811 kb on - strand, within MPMX20_00460at 475.822 kb on - strand, within MPMX20_00460at 475.859 kb on - strand, within MPMX20_00460at 475.904 kb on - strand, within MPMX20_00460at 475.904 kb on - strand, within MPMX20_00460at 475.922 kb on - strand, within MPMX20_00460at 475.943 kb on + strand, within MPMX20_00460at 475.946 kb on - strand, within MPMX20_00460at 475.961 kb on - strand, within MPMX20_00460at 475.964 kb on + strand, within MPMX20_00460at 475.982 kb on - strand, within MPMX20_00460at 475.988 kb on + strand, within MPMX20_00460at 475.988 kb on + strand, within MPMX20_00460at 475.988 kb on + strand, within MPMX20_00460at 475.996 kb on - strand, within MPMX20_00460at 475.996 kb on - strand, within MPMX20_00460at 475.996 kb on - strand, within MPMX20_00460at 475.996 kb on - strand, within MPMX20_00460at 476.016 kb on + strand, within MPMX20_00460at 476.019 kb on - strand, within MPMX20_00460at 476.172 kb on + strand, within MPMX20_00460at 476.176 kb on - strand, within MPMX20_00460at 476.264 kb on - strand, within MPMX20_00460at 476.300 kb on - strand, within MPMX20_00460at 476.320 kb on + strand, within MPMX20_00460at 476.338 kb on + strand, within MPMX20_00460at 476.349 kb on + strand, within MPMX20_00460at 476.479 kb on - strand, within MPMX20_00460at 476.481 kb on + strand, within MPMX20_00460at 476.560 kb on - strand, within MPMX20_00460at 476.585 kb on - strand, within MPMX20_00460at 476.620 kb on - strand, within MPMX20_00460at 476.633 kb on + strand, within MPMX20_00460at 476.660 kb on - strandat 476.855 kb on + strandat 476.887 kb on + strandat 476.895 kb on - strandat 476.992 kb on + strandat 477.000 kb on - strandat 477.000 kb on - strandat 477.000 kb on - strandat 477.001 kb on + strandat 477.001 kb on - strandat 477.009 kb on - strandat 477.086 kb on - strand, within MPMX20_00461at 477.086 kb on - strand, within MPMX20_00461at 477.292 kb on - strand, within MPMX20_00461at 477.313 kb on - strand, within MPMX20_00461at 477.328 kb on - strand, within MPMX20_00461at 477.350 kb on + strand, within MPMX20_00461at 477.350 kb on + strand, within MPMX20_00461at 477.358 kb on - strand, within MPMX20_00461at 477.358 kb on - strand, within MPMX20_00461at 477.368 kb on - strand, within MPMX20_00461at 477.368 kb on - strand, within MPMX20_00461at 477.412 kb on - strand, within MPMX20_00461at 477.435 kb on - strand, within MPMX20_00461at 477.443 kb on + strand, within MPMX20_00461at 477.465 kb on + strand, within MPMX20_00461at 477.494 kb on - strand, within MPMX20_00461at 477.530 kb on + strand, within MPMX20_00461at 477.548 kb on - strand, within MPMX20_00461at 477.548 kb on - strand, within MPMX20_00461at 477.562 kb on + strand, within MPMX20_00461at 477.562 kb on + strand, within MPMX20_00461at 477.570 kb on - strand, within MPMX20_00461at 477.664 kb on - strandat 477.664 kb on - strandat 477.698 kb on + strandat 477.705 kb on + strandat 477.755 kb on + strandat 477.777 kb on - strandat 477.792 kb on + strandat 477.794 kb on - strandat 477.859 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
remove
473,804 + -0.9
473,804 + +1.4
473,812 - +0.0
473,812 - -0.7
473,944 + -0.5
474,008 + +0.2
474,028 + -0.4
474,028 + +0.9
474,028 + +0.9
474,028 + +2.4
474,036 - MPMX20_00459 0.12 +0.3
474,085 + MPMX20_00459 0.23 +1.2
474,085 + MPMX20_00459 0.23 -1.6
474,085 + MPMX20_00459 0.23 +0.8
474,085 + MPMX20_00459 0.23 +2.0
474,085 + MPMX20_00459 0.23 +0.9
474,085 + MPMX20_00459 0.23 +0.4
474,085 + MPMX20_00459 0.23 -0.2
474,085 + MPMX20_00459 0.23 -0.5
474,093 - MPMX20_00459 0.25 -2.6
474,093 - MPMX20_00459 0.25 -0.7
474,093 - MPMX20_00459 0.25 -1.5
474,093 - MPMX20_00459 0.25 -2.4
474,093 - MPMX20_00459 0.25 -0.8
474,093 - MPMX20_00459 0.25 +0.1
474,093 - MPMX20_00459 0.25 -1.6
474,093 - MPMX20_00459 0.25 +0.3
474,093 - MPMX20_00459 0.25 +0.5
474,093 - MPMX20_00459 0.25 -1.8
474,093 - MPMX20_00459 0.25 -0.1
474,093 - MPMX20_00459 0.25 -1.0
474,130 + MPMX20_00459 0.34 -0.5
474,149 - MPMX20_00459 0.38 +0.6
474,187 + MPMX20_00459 0.47 +0.7
474,212 - MPMX20_00459 0.53 -1.6
474,212 - MPMX20_00459 0.53 +0.3
474,294 + MPMX20_00459 0.72 +0.9
474,356 - MPMX20_00459 0.87 +0.3
474,384 - +0.0
474,428 + -0.6
474,510 - -2.8
474,529 - -1.7
474,603 + -1.0
474,606 - -1.9
474,692 + -0.9
474,741 - MPMX20_00460 0.12 -0.1
474,768 + MPMX20_00460 0.13 -1.3
474,782 + MPMX20_00460 0.14 -0.6
474,790 - MPMX20_00460 0.14 -0.9
474,822 - MPMX20_00460 0.15 +0.2
474,854 - MPMX20_00460 0.17 -1.1
474,882 - MPMX20_00460 0.18 -0.9
474,888 + MPMX20_00460 0.18 -1.0
474,939 - MPMX20_00460 0.20 +0.4
474,994 + MPMX20_00460 0.22 -2.4
474,996 + MPMX20_00460 0.22 -1.3
475,046 + MPMX20_00460 0.24 -1.4
475,205 + MPMX20_00460 0.31 -1.2
475,386 + MPMX20_00460 0.38 -0.7
475,389 - MPMX20_00460 0.38 -0.9
475,411 - MPMX20_00460 0.39 -1.5
475,478 + MPMX20_00460 0.42 -2.1
475,484 + MPMX20_00460 0.42 +1.4
475,486 - MPMX20_00460 0.42 +0.0
475,500 + MPMX20_00460 0.43 -3.0
475,500 + MPMX20_00460 0.43 +0.4
475,570 + MPMX20_00460 0.46 -2.0
475,577 + MPMX20_00460 0.46 +2.2
475,580 + MPMX20_00460 0.46 -0.4
475,588 + MPMX20_00460 0.47 -2.2
475,596 - MPMX20_00460 0.47 -1.1
475,596 - MPMX20_00460 0.47 -0.4
475,598 + MPMX20_00460 0.47 -1.9
475,613 - MPMX20_00460 0.48 -2.9
475,614 - MPMX20_00460 0.48 +0.9
475,618 - MPMX20_00460 0.48 -1.1
475,678 + MPMX20_00460 0.50 -3.4
475,710 - MPMX20_00460 0.52 -1.0
475,769 - MPMX20_00460 0.54 -1.8
475,787 + MPMX20_00460 0.55 -1.6
475,792 + MPMX20_00460 0.55 -1.6
475,811 - MPMX20_00460 0.56 -0.6
475,811 - MPMX20_00460 0.56 -2.0
475,822 - MPMX20_00460 0.56 -0.8
475,859 - MPMX20_00460 0.58 -3.1
475,904 - MPMX20_00460 0.60 +1.2
475,904 - MPMX20_00460 0.60 -2.8
475,922 - MPMX20_00460 0.60 -1.8
475,943 + MPMX20_00460 0.61 -1.9
475,946 - MPMX20_00460 0.61 -0.9
475,961 - MPMX20_00460 0.62 -2.9
475,964 + MPMX20_00460 0.62 -1.2
475,982 - MPMX20_00460 0.63 -2.0
475,988 + MPMX20_00460 0.63 -2.3
475,988 + MPMX20_00460 0.63 -1.4
475,988 + MPMX20_00460 0.63 -0.6
475,996 - MPMX20_00460 0.63 -2.5
475,996 - MPMX20_00460 0.63 -1.6
475,996 - MPMX20_00460 0.63 -2.1
475,996 - MPMX20_00460 0.63 +0.1
476,016 + MPMX20_00460 0.64 -2.0
476,019 - MPMX20_00460 0.64 -1.3
476,172 + MPMX20_00460 0.70 -1.4
476,176 - MPMX20_00460 0.71 -1.0
476,264 - MPMX20_00460 0.74 -0.8
476,300 - MPMX20_00460 0.76 -2.9
476,320 + MPMX20_00460 0.77 -0.5
476,338 + MPMX20_00460 0.77 -0.9
476,349 + MPMX20_00460 0.78 -0.3
476,479 - MPMX20_00460 0.83 -3.0
476,481 + MPMX20_00460 0.83 -3.0
476,560 - MPMX20_00460 0.86 -0.9
476,585 - MPMX20_00460 0.87 -0.9
476,620 - MPMX20_00460 0.89 -0.5
476,633 + MPMX20_00460 0.89 +0.3
476,660 - -2.7
476,855 + -0.2
476,887 + +0.2
476,895 - +0.4
476,992 + +0.2
477,000 - -0.8
477,000 - +0.6
477,000 - -0.9
477,001 + -0.5
477,001 - -0.4
477,009 - -0.0
477,086 - MPMX20_00461 0.17 +0.8
477,086 - MPMX20_00461 0.17 -0.0
477,292 - MPMX20_00461 0.45 -1.1
477,313 - MPMX20_00461 0.48 +0.1
477,328 - MPMX20_00461 0.50 +0.8
477,350 + MPMX20_00461 0.53 -0.5
477,350 + MPMX20_00461 0.53 +0.1
477,358 - MPMX20_00461 0.54 +0.2
477,358 - MPMX20_00461 0.54 +0.2
477,368 - MPMX20_00461 0.55 -1.2
477,368 - MPMX20_00461 0.55 +0.6
477,412 - MPMX20_00461 0.61 -0.1
477,435 - MPMX20_00461 0.64 +0.3
477,443 + MPMX20_00461 0.65 -0.0
477,465 + MPMX20_00461 0.68 -1.4
477,494 - MPMX20_00461 0.72 +0.1
477,530 + MPMX20_00461 0.77 -1.8
477,548 - MPMX20_00461 0.80 -1.8
477,548 - MPMX20_00461 0.80 +0.6
477,562 + MPMX20_00461 0.82 -1.2
477,562 + MPMX20_00461 0.82 -0.5
477,570 - MPMX20_00461 0.83 +1.0
477,664 - -0.4
477,664 - -0.4
477,698 + +0.7
477,705 + +1.5
477,755 + -0.1
477,777 - +0.5
477,792 + -0.1
477,794 - +0.9
477,859 + -0.9

Or see this region's nucleotide sequence