Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04555 and MPMX20_04556 are separated by 150 nucleotides MPMX20_04556 and MPMX20_04557 overlap by 4 nucleotides MPMX20_04557 and MPMX20_04558 are separated by 54 nucleotides MPMX20_04558 and MPMX20_04559 are separated by 70 nucleotides
MPMX20_04555: MPMX20_04555 - Periplasmic protein CpxP, at 4,767,172 to 4,767,678
_04555
MPMX20_04556: MPMX20_04556 - Transcriptional regulatory protein CpxR, at 4,767,829 to 4,768,527
_04556
MPMX20_04557: MPMX20_04557 - Sensor histidine kinase CpxA, at 4,768,524 to 4,769,897
_04557
MPMX20_04558: MPMX20_04558 - Protein YiiM, at 4,769,952 to 4,770,626
_04558
MPMX20_04559: MPMX20_04559 - Superoxide dismutase [Mn], at 4,770,697 to 4,771,317
_04559
Position (kb)
4768
4769
4770 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4767.543 kb on + strand, within MPMX20_04555 at 4767.570 kb on - strand, within MPMX20_04555 at 4767.629 kb on - strand at 4767.629 kb on - strand at 4767.629 kb on - strand at 4767.663 kb on + strand at 4767.673 kb on + strand at 4767.757 kb on + strand at 4767.797 kb on - strand at 4768.026 kb on + strand, within MPMX20_04556 at 4768.044 kb on - strand, within MPMX20_04556 at 4768.068 kb on + strand, within MPMX20_04556 at 4768.076 kb on + strand, within MPMX20_04556 at 4768.084 kb on - strand, within MPMX20_04556 at 4768.094 kb on + strand, within MPMX20_04556 at 4768.094 kb on + strand, within MPMX20_04556 at 4768.094 kb on + strand, within MPMX20_04556 at 4768.094 kb on + strand, within MPMX20_04556 at 4768.102 kb on - strand, within MPMX20_04556 at 4768.102 kb on - strand, within MPMX20_04556 at 4768.102 kb on - strand, within MPMX20_04556 at 4768.102 kb on - strand, within MPMX20_04556 at 4768.102 kb on - strand, within MPMX20_04556 at 4768.102 kb on - strand, within MPMX20_04556 at 4768.158 kb on + strand, within MPMX20_04556 at 4768.168 kb on + strand, within MPMX20_04556 at 4768.176 kb on - strand, within MPMX20_04556 at 4768.353 kb on + strand, within MPMX20_04556 at 4768.430 kb on + strand, within MPMX20_04556 at 4768.479 kb on + strand at 4768.487 kb on - strand at 4768.487 kb on - strand at 4768.534 kb on + strand at 4768.542 kb on + strand at 4768.593 kb on + strand at 4768.603 kb on + strand at 4768.635 kb on + strand at 4768.687 kb on - strand, within MPMX20_04557 at 4768.769 kb on - strand, within MPMX20_04557 at 4768.844 kb on - strand, within MPMX20_04557 at 4768.898 kb on + strand, within MPMX20_04557 at 4768.898 kb on + strand, within MPMX20_04557 at 4769.129 kb on + strand, within MPMX20_04557 at 4769.223 kb on - strand, within MPMX20_04557 at 4769.297 kb on + strand, within MPMX20_04557 at 4769.305 kb on - strand, within MPMX20_04557 at 4769.378 kb on - strand, within MPMX20_04557 at 4769.473 kb on - strand, within MPMX20_04557 at 4769.569 kb on - strand, within MPMX20_04557 at 4769.627 kb on + strand, within MPMX20_04557 at 4769.627 kb on + strand, within MPMX20_04557 at 4769.635 kb on - strand, within MPMX20_04557 at 4769.635 kb on - strand, within MPMX20_04557 at 4769.686 kb on + strand, within MPMX20_04557 at 4769.686 kb on + strand, within MPMX20_04557 at 4769.694 kb on - strand, within MPMX20_04557 at 4769.698 kb on + strand, within MPMX20_04557 at 4769.698 kb on + strand, within MPMX20_04557 at 4769.723 kb on - strand, within MPMX20_04557 at 4769.745 kb on - strand, within MPMX20_04557 at 4769.770 kb on + strand at 4769.783 kb on - strand at 4769.861 kb on - strand at 4769.868 kb on - strand at 4769.940 kb on + strand at 4770.116 kb on - strand, within MPMX20_04558 at 4770.127 kb on - strand, within MPMX20_04558 at 4770.147 kb on - strand, within MPMX20_04558 at 4770.511 kb on + strand, within MPMX20_04558 at 4770.587 kb on + strand at 4770.587 kb on + strand at 4770.587 kb on + strand at 4770.587 kb on + strand at 4770.594 kb on - strand at 4770.594 kb on - strand at 4770.595 kb on - strand at 4770.595 kb on - strand at 4770.595 kb on - strand at 4770.595 kb on - strand at 4770.595 kb on - strand at 4770.634 kb on - strand at 4770.736 kb on + strand at 4770.744 kb on - strand at 4770.820 kb on + strand, within MPMX20_04559
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 4,767,543 + MPMX20_04555 0.73 +0.3 4,767,570 - MPMX20_04555 0.79 -0.2 4,767,629 - +0.1 4,767,629 - -1.4 4,767,629 - +0.7 4,767,663 + -1.4 4,767,673 + -0.2 4,767,757 + -0.2 4,767,797 - -1.3 4,768,026 + MPMX20_04556 0.28 +1.9 4,768,044 - MPMX20_04556 0.31 -0.7 4,768,068 + MPMX20_04556 0.34 +0.5 4,768,076 + MPMX20_04556 0.35 -0.1 4,768,084 - MPMX20_04556 0.36 +0.8 4,768,094 + MPMX20_04556 0.38 +0.0 4,768,094 + MPMX20_04556 0.38 -0.6 4,768,094 + MPMX20_04556 0.38 -2.6 4,768,094 + MPMX20_04556 0.38 -0.2 4,768,102 - MPMX20_04556 0.39 -0.9 4,768,102 - MPMX20_04556 0.39 -0.7 4,768,102 - MPMX20_04556 0.39 -1.3 4,768,102 - MPMX20_04556 0.39 -1.9 4,768,102 - MPMX20_04556 0.39 -1.2 4,768,102 - MPMX20_04556 0.39 -0.1 4,768,158 + MPMX20_04556 0.47 +0.4 4,768,168 + MPMX20_04556 0.48 -0.8 4,768,176 - MPMX20_04556 0.50 -1.0 4,768,353 + MPMX20_04556 0.75 +0.6 4,768,430 + MPMX20_04556 0.86 -0.2 4,768,479 + -1.1 4,768,487 - -0.1 4,768,487 - -0.7 4,768,534 + -2.4 4,768,542 + -1.7 4,768,593 + -0.4 4,768,603 + -2.9 4,768,635 + -0.7 4,768,687 - MPMX20_04557 0.12 -1.4 4,768,769 - MPMX20_04557 0.18 -1.5 4,768,844 - MPMX20_04557 0.23 -3.9 4,768,898 + MPMX20_04557 0.27 -1.5 4,768,898 + MPMX20_04557 0.27 -2.3 4,769,129 + MPMX20_04557 0.44 -2.7 4,769,223 - MPMX20_04557 0.51 -0.7 4,769,297 + MPMX20_04557 0.56 -1.9 4,769,305 - MPMX20_04557 0.57 -3.3 4,769,378 - MPMX20_04557 0.62 +1.3 4,769,473 - MPMX20_04557 0.69 -1.4 4,769,569 - MPMX20_04557 0.76 -2.4 4,769,627 + MPMX20_04557 0.80 -2.0 4,769,627 + MPMX20_04557 0.80 -2.9 4,769,635 - MPMX20_04557 0.81 -1.1 4,769,635 - MPMX20_04557 0.81 -2.3 4,769,686 + MPMX20_04557 0.85 -2.3 4,769,686 + MPMX20_04557 0.85 -2.4 4,769,694 - MPMX20_04557 0.85 -1.6 4,769,698 + MPMX20_04557 0.85 -2.8 4,769,698 + MPMX20_04557 0.85 -1.6 4,769,723 - MPMX20_04557 0.87 -2.3 4,769,745 - MPMX20_04557 0.89 -1.3 4,769,770 + -0.7 4,769,783 - -1.7 4,769,861 - -0.3 4,769,868 - -0.9 4,769,940 + +0.5 4,770,116 - MPMX20_04558 0.24 +1.1 4,770,127 - MPMX20_04558 0.26 -0.0 4,770,147 - MPMX20_04558 0.29 +0.5 4,770,511 + MPMX20_04558 0.83 +0.0 4,770,587 + +0.4 4,770,587 + +2.4 4,770,587 + -2.6 4,770,587 + -1.4 4,770,594 - +0.8 4,770,594 - +0.8 4,770,595 - +0.1 4,770,595 - +0.2 4,770,595 - -0.4 4,770,595 - -0.1 4,770,595 - +0.2 4,770,634 - -0.1 4,770,736 + -0.5 4,770,744 - -0.1 4,770,820 + MPMX20_04559 0.20 -0.4
Or see this region's nucleotide sequence