Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04557

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04555 and MPMX20_04556 are separated by 150 nucleotidesMPMX20_04556 and MPMX20_04557 overlap by 4 nucleotidesMPMX20_04557 and MPMX20_04558 are separated by 54 nucleotidesMPMX20_04558 and MPMX20_04559 are separated by 70 nucleotides MPMX20_04555: MPMX20_04555 - Periplasmic protein CpxP, at 4,767,172 to 4,767,678 _04555 MPMX20_04556: MPMX20_04556 - Transcriptional regulatory protein CpxR, at 4,767,829 to 4,768,527 _04556 MPMX20_04557: MPMX20_04557 - Sensor histidine kinase CpxA, at 4,768,524 to 4,769,897 _04557 MPMX20_04558: MPMX20_04558 - Protein YiiM, at 4,769,952 to 4,770,626 _04558 MPMX20_04559: MPMX20_04559 - Superoxide dismutase [Mn], at 4,770,697 to 4,771,317 _04559 Position (kb) 4768 4769 4770Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4767.543 kb on + strand, within MPMX20_04555at 4767.570 kb on - strand, within MPMX20_04555at 4767.629 kb on - strandat 4767.629 kb on - strandat 4767.629 kb on - strandat 4767.663 kb on + strandat 4767.673 kb on + strandat 4767.757 kb on + strandat 4767.797 kb on - strandat 4768.026 kb on + strand, within MPMX20_04556at 4768.044 kb on - strand, within MPMX20_04556at 4768.068 kb on + strand, within MPMX20_04556at 4768.076 kb on + strand, within MPMX20_04556at 4768.084 kb on - strand, within MPMX20_04556at 4768.094 kb on + strand, within MPMX20_04556at 4768.094 kb on + strand, within MPMX20_04556at 4768.094 kb on + strand, within MPMX20_04556at 4768.094 kb on + strand, within MPMX20_04556at 4768.102 kb on - strand, within MPMX20_04556at 4768.102 kb on - strand, within MPMX20_04556at 4768.102 kb on - strand, within MPMX20_04556at 4768.102 kb on - strand, within MPMX20_04556at 4768.102 kb on - strand, within MPMX20_04556at 4768.102 kb on - strand, within MPMX20_04556at 4768.158 kb on + strand, within MPMX20_04556at 4768.168 kb on + strand, within MPMX20_04556at 4768.176 kb on - strand, within MPMX20_04556at 4768.353 kb on + strand, within MPMX20_04556at 4768.430 kb on + strand, within MPMX20_04556at 4768.479 kb on + strandat 4768.487 kb on - strandat 4768.487 kb on - strandat 4768.534 kb on + strandat 4768.542 kb on + strandat 4768.593 kb on + strandat 4768.603 kb on + strandat 4768.635 kb on + strandat 4768.687 kb on - strand, within MPMX20_04557at 4768.769 kb on - strand, within MPMX20_04557at 4768.844 kb on - strand, within MPMX20_04557at 4768.898 kb on + strand, within MPMX20_04557at 4768.898 kb on + strand, within MPMX20_04557at 4769.129 kb on + strand, within MPMX20_04557at 4769.223 kb on - strand, within MPMX20_04557at 4769.297 kb on + strand, within MPMX20_04557at 4769.305 kb on - strand, within MPMX20_04557at 4769.378 kb on - strand, within MPMX20_04557at 4769.473 kb on - strand, within MPMX20_04557at 4769.569 kb on - strand, within MPMX20_04557at 4769.627 kb on + strand, within MPMX20_04557at 4769.627 kb on + strand, within MPMX20_04557at 4769.635 kb on - strand, within MPMX20_04557at 4769.635 kb on - strand, within MPMX20_04557at 4769.686 kb on + strand, within MPMX20_04557at 4769.686 kb on + strand, within MPMX20_04557at 4769.694 kb on - strand, within MPMX20_04557at 4769.698 kb on + strand, within MPMX20_04557at 4769.698 kb on + strand, within MPMX20_04557at 4769.723 kb on - strand, within MPMX20_04557at 4769.745 kb on - strand, within MPMX20_04557at 4769.770 kb on + strandat 4769.783 kb on - strandat 4769.861 kb on - strandat 4769.868 kb on - strandat 4769.940 kb on + strandat 4770.116 kb on - strand, within MPMX20_04558at 4770.127 kb on - strand, within MPMX20_04558at 4770.147 kb on - strand, within MPMX20_04558at 4770.511 kb on + strand, within MPMX20_04558at 4770.587 kb on + strandat 4770.587 kb on + strandat 4770.587 kb on + strandat 4770.587 kb on + strandat 4770.594 kb on - strandat 4770.594 kb on - strandat 4770.595 kb on - strandat 4770.595 kb on - strandat 4770.595 kb on - strandat 4770.595 kb on - strandat 4770.595 kb on - strandat 4770.634 kb on - strandat 4770.736 kb on + strandat 4770.744 kb on - strandat 4770.820 kb on + strand, within MPMX20_04559

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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4,767,543 + MPMX20_04555 0.73 +0.3
4,767,570 - MPMX20_04555 0.79 -0.2
4,767,629 - +0.1
4,767,629 - -1.4
4,767,629 - +0.7
4,767,663 + -1.4
4,767,673 + -0.2
4,767,757 + -0.2
4,767,797 - -1.3
4,768,026 + MPMX20_04556 0.28 +1.9
4,768,044 - MPMX20_04556 0.31 -0.7
4,768,068 + MPMX20_04556 0.34 +0.5
4,768,076 + MPMX20_04556 0.35 -0.1
4,768,084 - MPMX20_04556 0.36 +0.8
4,768,094 + MPMX20_04556 0.38 +0.0
4,768,094 + MPMX20_04556 0.38 -0.6
4,768,094 + MPMX20_04556 0.38 -2.6
4,768,094 + MPMX20_04556 0.38 -0.2
4,768,102 - MPMX20_04556 0.39 -0.9
4,768,102 - MPMX20_04556 0.39 -0.7
4,768,102 - MPMX20_04556 0.39 -1.3
4,768,102 - MPMX20_04556 0.39 -1.9
4,768,102 - MPMX20_04556 0.39 -1.2
4,768,102 - MPMX20_04556 0.39 -0.1
4,768,158 + MPMX20_04556 0.47 +0.4
4,768,168 + MPMX20_04556 0.48 -0.8
4,768,176 - MPMX20_04556 0.50 -1.0
4,768,353 + MPMX20_04556 0.75 +0.6
4,768,430 + MPMX20_04556 0.86 -0.2
4,768,479 + -1.1
4,768,487 - -0.1
4,768,487 - -0.7
4,768,534 + -2.4
4,768,542 + -1.7
4,768,593 + -0.4
4,768,603 + -2.9
4,768,635 + -0.7
4,768,687 - MPMX20_04557 0.12 -1.4
4,768,769 - MPMX20_04557 0.18 -1.5
4,768,844 - MPMX20_04557 0.23 -3.9
4,768,898 + MPMX20_04557 0.27 -1.5
4,768,898 + MPMX20_04557 0.27 -2.3
4,769,129 + MPMX20_04557 0.44 -2.7
4,769,223 - MPMX20_04557 0.51 -0.7
4,769,297 + MPMX20_04557 0.56 -1.9
4,769,305 - MPMX20_04557 0.57 -3.3
4,769,378 - MPMX20_04557 0.62 +1.3
4,769,473 - MPMX20_04557 0.69 -1.4
4,769,569 - MPMX20_04557 0.76 -2.4
4,769,627 + MPMX20_04557 0.80 -2.0
4,769,627 + MPMX20_04557 0.80 -2.9
4,769,635 - MPMX20_04557 0.81 -1.1
4,769,635 - MPMX20_04557 0.81 -2.3
4,769,686 + MPMX20_04557 0.85 -2.3
4,769,686 + MPMX20_04557 0.85 -2.4
4,769,694 - MPMX20_04557 0.85 -1.6
4,769,698 + MPMX20_04557 0.85 -2.8
4,769,698 + MPMX20_04557 0.85 -1.6
4,769,723 - MPMX20_04557 0.87 -2.3
4,769,745 - MPMX20_04557 0.89 -1.3
4,769,770 + -0.7
4,769,783 - -1.7
4,769,861 - -0.3
4,769,868 - -0.9
4,769,940 + +0.5
4,770,116 - MPMX20_04558 0.24 +1.1
4,770,127 - MPMX20_04558 0.26 -0.0
4,770,147 - MPMX20_04558 0.29 +0.5
4,770,511 + MPMX20_04558 0.83 +0.0
4,770,587 + +0.4
4,770,587 + +2.4
4,770,587 + -2.6
4,770,587 + -1.4
4,770,594 - +0.8
4,770,594 - +0.8
4,770,595 - +0.1
4,770,595 - +0.2
4,770,595 - -0.4
4,770,595 - -0.1
4,770,595 - +0.2
4,770,634 - -0.1
4,770,736 + -0.5
4,770,744 - -0.1
4,770,820 + MPMX20_04559 0.20 -0.4

Or see this region's nucleotide sequence