Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04531

Experiment: D-Salicin (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04530 and MPMX20_04531 are separated by 2 nucleotidesMPMX20_04531 and MPMX20_04532 are separated by 276 nucleotidesMPMX20_04532 and MPMX20_04533 are separated by 48 nucleotides MPMX20_04530: MPMX20_04530 - Bifunctional aspartokinase/homoserine dehydrogenase 2, at 4,741,853 to 4,744,285 _04530 MPMX20_04531: MPMX20_04531 - Cystathionine gamma-synthase, at 4,744,288 to 4,745,448 _04531 MPMX20_04532: MPMX20_04532 - Met repressor, at 4,745,725 to 4,746,042 _04532 MPMX20_04533: MPMX20_04533 - 50S ribosomal protein L31, at 4,746,091 to 4,746,303 _04533 Position (kb) 4744 4745 4746Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 4743.331 kb on + strand, within MPMX20_04530at 4743.390 kb on - strand, within MPMX20_04530at 4743.395 kb on - strand, within MPMX20_04530at 4743.405 kb on - strand, within MPMX20_04530at 4743.423 kb on + strand, within MPMX20_04530at 4743.431 kb on - strand, within MPMX20_04530at 4743.568 kb on + strand, within MPMX20_04530at 4743.573 kb on + strand, within MPMX20_04530at 4743.573 kb on + strand, within MPMX20_04530at 4743.576 kb on - strand, within MPMX20_04530at 4743.576 kb on - strand, within MPMX20_04530at 4743.576 kb on - strand, within MPMX20_04530at 4743.576 kb on - strand, within MPMX20_04530at 4743.635 kb on + strand, within MPMX20_04530at 4743.645 kb on + strand, within MPMX20_04530at 4743.653 kb on - strand, within MPMX20_04530at 4743.653 kb on - strand, within MPMX20_04530at 4743.660 kb on - strand, within MPMX20_04530at 4743.666 kb on + strand, within MPMX20_04530at 4743.674 kb on - strand, within MPMX20_04530at 4743.718 kb on + strand, within MPMX20_04530at 4743.726 kb on - strand, within MPMX20_04530at 4743.726 kb on - strand, within MPMX20_04530at 4743.770 kb on + strand, within MPMX20_04530at 4743.773 kb on - strand, within MPMX20_04530at 4743.784 kb on - strand, within MPMX20_04530at 4743.829 kb on + strand, within MPMX20_04530at 4743.837 kb on - strand, within MPMX20_04530at 4743.841 kb on - strand, within MPMX20_04530at 4743.896 kb on - strand, within MPMX20_04530at 4743.901 kb on - strand, within MPMX20_04530at 4743.917 kb on + strand, within MPMX20_04530at 4743.917 kb on + strand, within MPMX20_04530at 4743.917 kb on + strand, within MPMX20_04530at 4743.917 kb on + strand, within MPMX20_04530at 4743.917 kb on + strand, within MPMX20_04530at 4743.921 kb on - strand, within MPMX20_04530at 4743.925 kb on - strand, within MPMX20_04530at 4744.058 kb on + strandat 4744.058 kb on + strandat 4744.058 kb on - strandat 4744.099 kb on + strandat 4744.107 kb on - strandat 4744.120 kb on + strandat 4744.157 kb on - strandat 4744.179 kb on + strandat 4744.187 kb on - strandat 4744.187 kb on - strandat 4744.208 kb on + strandat 4744.216 kb on - strandat 4744.254 kb on - strandat 4744.273 kb on - strandat 4744.285 kb on + strandat 4744.293 kb on - strandat 4744.293 kb on - strandat 4744.299 kb on - strandat 4744.355 kb on - strandat 4744.419 kb on - strand, within MPMX20_04531at 4744.420 kb on + strand, within MPMX20_04531at 4744.426 kb on + strand, within MPMX20_04531at 4744.454 kb on - strand, within MPMX20_04531at 4744.495 kb on - strand, within MPMX20_04531at 4744.499 kb on - strand, within MPMX20_04531at 4744.518 kb on + strand, within MPMX20_04531at 4744.673 kb on + strand, within MPMX20_04531at 4744.681 kb on - strand, within MPMX20_04531at 4744.681 kb on - strand, within MPMX20_04531at 4744.683 kb on + strand, within MPMX20_04531at 4744.735 kb on + strand, within MPMX20_04531at 4744.765 kb on - strand, within MPMX20_04531at 4744.775 kb on + strand, within MPMX20_04531at 4744.824 kb on - strand, within MPMX20_04531at 4744.890 kb on + strand, within MPMX20_04531at 4744.898 kb on - strand, within MPMX20_04531at 4744.903 kb on + strand, within MPMX20_04531at 4744.925 kb on + strand, within MPMX20_04531at 4744.925 kb on + strand, within MPMX20_04531at 4744.932 kb on + strand, within MPMX20_04531at 4744.932 kb on + strand, within MPMX20_04531at 4744.932 kb on - strand, within MPMX20_04531at 4744.940 kb on - strand, within MPMX20_04531at 4745.015 kb on + strand, within MPMX20_04531at 4745.144 kb on + strand, within MPMX20_04531at 4745.158 kb on - strand, within MPMX20_04531at 4745.219 kb on + strand, within MPMX20_04531at 4745.238 kb on - strand, within MPMX20_04531at 4745.317 kb on - strand, within MPMX20_04531at 4745.319 kb on - strand, within MPMX20_04531at 4745.392 kb on - strandat 4745.394 kb on - strandat 4745.421 kb on + strandat 4745.436 kb on + strandat 4745.449 kb on + strandat 4745.457 kb on - strandat 4745.471 kb on - strandat 4745.633 kb on - strandat 4745.637 kb on + strandat 4745.667 kb on - strandat 4745.710 kb on + strandat 4745.710 kb on + strandat 4745.820 kb on - strand, within MPMX20_04532at 4745.893 kb on + strand, within MPMX20_04532at 4745.953 kb on - strand, within MPMX20_04532at 4745.953 kb on - strand, within MPMX20_04532at 4746.002 kb on - strand, within MPMX20_04532at 4746.117 kb on - strand, within MPMX20_04533

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
remove
4,743,331 + MPMX20_04530 0.61 -3.2
4,743,390 - MPMX20_04530 0.63 -2.7
4,743,395 - MPMX20_04530 0.63 -2.2
4,743,405 - MPMX20_04530 0.64 -3.7
4,743,423 + MPMX20_04530 0.65 -2.7
4,743,431 - MPMX20_04530 0.65 -2.8
4,743,568 + MPMX20_04530 0.70 -5.0
4,743,573 + MPMX20_04530 0.71 -1.5
4,743,573 + MPMX20_04530 0.71 -0.1
4,743,576 - MPMX20_04530 0.71 -2.2
4,743,576 - MPMX20_04530 0.71 -4.3
4,743,576 - MPMX20_04530 0.71 -3.5
4,743,576 - MPMX20_04530 0.71 -3.1
4,743,635 + MPMX20_04530 0.73 -3.4
4,743,645 + MPMX20_04530 0.74 -2.8
4,743,653 - MPMX20_04530 0.74 -4.0
4,743,653 - MPMX20_04530 0.74 -0.4
4,743,660 - MPMX20_04530 0.74 -5.4
4,743,666 + MPMX20_04530 0.75 -3.8
4,743,674 - MPMX20_04530 0.75 -0.1
4,743,718 + MPMX20_04530 0.77 -4.6
4,743,726 - MPMX20_04530 0.77 -2.2
4,743,726 - MPMX20_04530 0.77 +0.9
4,743,770 + MPMX20_04530 0.79 -3.1
4,743,773 - MPMX20_04530 0.79 +0.3
4,743,784 - MPMX20_04530 0.79 -0.1
4,743,829 + MPMX20_04530 0.81 -3.7
4,743,837 - MPMX20_04530 0.82 -2.8
4,743,841 - MPMX20_04530 0.82 -3.9
4,743,896 - MPMX20_04530 0.84 -3.5
4,743,901 - MPMX20_04530 0.84 -2.5
4,743,917 + MPMX20_04530 0.85 -3.9
4,743,917 + MPMX20_04530 0.85 -2.7
4,743,917 + MPMX20_04530 0.85 -4.3
4,743,917 + MPMX20_04530 0.85 -3.4
4,743,917 + MPMX20_04530 0.85 -2.7
4,743,921 - MPMX20_04530 0.85 -3.4
4,743,925 - MPMX20_04530 0.85 -0.4
4,744,058 + -4.5
4,744,058 + -3.4
4,744,058 - -3.4
4,744,099 + -4.3
4,744,107 - -1.5
4,744,120 + -0.1
4,744,157 - -0.7
4,744,179 + -0.1
4,744,187 - -3.7
4,744,187 - -2.5
4,744,208 + -1.8
4,744,216 - -3.4
4,744,254 - -1.2
4,744,273 - -4.0
4,744,285 + -1.5
4,744,293 - +2.5
4,744,293 - +3.9
4,744,299 - -3.5
4,744,355 - -0.9
4,744,419 - MPMX20_04531 0.11 -4.9
4,744,420 + MPMX20_04531 0.11 -4.5
4,744,426 + MPMX20_04531 0.12 -1.1
4,744,454 - MPMX20_04531 0.14 -2.1
4,744,495 - MPMX20_04531 0.18 -5.2
4,744,499 - MPMX20_04531 0.18 -3.9
4,744,518 + MPMX20_04531 0.20 -0.4
4,744,673 + MPMX20_04531 0.33 -2.8
4,744,681 - MPMX20_04531 0.34 +0.3
4,744,681 - MPMX20_04531 0.34 -1.9
4,744,683 + MPMX20_04531 0.34 -4.6
4,744,735 + MPMX20_04531 0.39 -4.5
4,744,765 - MPMX20_04531 0.41 -3.7
4,744,775 + MPMX20_04531 0.42 -1.4
4,744,824 - MPMX20_04531 0.46 -3.7
4,744,890 + MPMX20_04531 0.52 -4.3
4,744,898 - MPMX20_04531 0.53 -3.2
4,744,903 + MPMX20_04531 0.53 -2.5
4,744,925 + MPMX20_04531 0.55 -3.0
4,744,925 + MPMX20_04531 0.55 -2.1
4,744,932 + MPMX20_04531 0.55 -2.8
4,744,932 + MPMX20_04531 0.55 -5.8
4,744,932 - MPMX20_04531 0.55 -3.7
4,744,940 - MPMX20_04531 0.56 -2.3
4,745,015 + MPMX20_04531 0.63 -3.6
4,745,144 + MPMX20_04531 0.74 -2.2
4,745,158 - MPMX20_04531 0.75 -3.2
4,745,219 + MPMX20_04531 0.80 -3.8
4,745,238 - MPMX20_04531 0.82 -1.9
4,745,317 - MPMX20_04531 0.89 -4.3
4,745,319 - MPMX20_04531 0.89 -0.4
4,745,392 - -1.7
4,745,394 - -1.3
4,745,421 + -4.4
4,745,436 + -4.2
4,745,449 + -1.9
4,745,457 - -3.5
4,745,471 - -0.3
4,745,633 - -1.4
4,745,637 + -0.5
4,745,667 - +0.4
4,745,710 + -1.2
4,745,710 + +0.4
4,745,820 - MPMX20_04532 0.30 +0.1
4,745,893 + MPMX20_04532 0.53 -3.3
4,745,953 - MPMX20_04532 0.72 -1.5
4,745,953 - MPMX20_04532 0.72 -1.7
4,746,002 - MPMX20_04532 0.87 -2.0
4,746,117 - MPMX20_04533 0.12 -1.0

Or see this region's nucleotide sequence