Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04522 and MPMX20_04523 are separated by 88 nucleotides MPMX20_04523 and MPMX20_04524 are separated by 270 nucleotides
MPMX20_04522: MPMX20_04522 - N-acetyl-gamma-glutamyl-phosphate reductase, at 4,730,395 to 4,731,399
_04522
MPMX20_04523: MPMX20_04523 - Acetylornithine deacetylase, at 4,731,488 to 4,732,639
_04523
MPMX20_04524: MPMX20_04524 - Phosphoenolpyruvate carboxylase, at 4,732,910 to 4,735,561
_04524
Position (kb)
4731
4732
4733 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 4730.606 kb on + strand, within MPMX20_04522 at 4730.611 kb on + strand, within MPMX20_04522 at 4730.624 kb on - strand, within MPMX20_04522 at 4730.709 kb on - strand, within MPMX20_04522 at 4730.709 kb on - strand, within MPMX20_04522 at 4730.709 kb on - strand, within MPMX20_04522 at 4730.719 kb on + strand, within MPMX20_04522 at 4730.792 kb on - strand, within MPMX20_04522 at 4730.792 kb on - strand, within MPMX20_04522 at 4730.874 kb on + strand, within MPMX20_04522 at 4730.897 kb on - strand, within MPMX20_04522 at 4730.942 kb on - strand, within MPMX20_04522 at 4730.983 kb on + strand, within MPMX20_04522 at 4730.991 kb on + strand, within MPMX20_04522 at 4730.999 kb on - strand, within MPMX20_04522 at 4730.999 kb on - strand, within MPMX20_04522 at 4731.001 kb on + strand, within MPMX20_04522 at 4731.028 kb on + strand, within MPMX20_04522 at 4731.030 kb on + strand, within MPMX20_04522 at 4731.038 kb on - strand, within MPMX20_04522 at 4731.038 kb on - strand, within MPMX20_04522 at 4731.070 kb on + strand, within MPMX20_04522 at 4731.094 kb on - strand, within MPMX20_04522 at 4731.095 kb on + strand, within MPMX20_04522 at 4731.185 kb on - strand, within MPMX20_04522 at 4731.286 kb on + strand, within MPMX20_04522 at 4731.286 kb on + strand, within MPMX20_04522 at 4731.291 kb on + strand, within MPMX20_04522 at 4731.291 kb on + strand, within MPMX20_04522 at 4731.294 kb on - strand, within MPMX20_04522 at 4731.343 kb on + strand at 4731.359 kb on - strand at 4731.406 kb on + strand at 4731.414 kb on - strand at 4731.469 kb on + strand at 4731.542 kb on + strand at 4731.550 kb on - strand at 4731.572 kb on + strand at 4731.640 kb on + strand, within MPMX20_04523 at 4731.687 kb on + strand, within MPMX20_04523 at 4731.687 kb on + strand, within MPMX20_04523 at 4731.695 kb on - strand, within MPMX20_04523 at 4731.697 kb on + strand, within MPMX20_04523 at 4731.720 kb on - strand, within MPMX20_04523 at 4731.771 kb on + strand, within MPMX20_04523 at 4731.789 kb on - strand, within MPMX20_04523 at 4731.807 kb on - strand, within MPMX20_04523 at 4731.862 kb on - strand, within MPMX20_04523 at 4731.867 kb on - strand, within MPMX20_04523 at 4731.883 kb on + strand, within MPMX20_04523 at 4731.886 kb on - strand, within MPMX20_04523 at 4731.888 kb on - strand, within MPMX20_04523 at 4732.070 kb on - strand, within MPMX20_04523 at 4732.075 kb on - strand, within MPMX20_04523 at 4732.189 kb on + strand, within MPMX20_04523 at 4732.224 kb on + strand, within MPMX20_04523 at 4732.232 kb on - strand, within MPMX20_04523 at 4732.251 kb on - strand, within MPMX20_04523 at 4732.298 kb on - strand, within MPMX20_04523 at 4732.377 kb on + strand, within MPMX20_04523 at 4732.482 kb on - strand, within MPMX20_04523 at 4732.504 kb on + strand, within MPMX20_04523 at 4732.509 kb on + strand, within MPMX20_04523 at 4732.509 kb on + strand, within MPMX20_04523 at 4732.509 kb on + strand, within MPMX20_04523 at 4732.509 kb on + strand, within MPMX20_04523 at 4732.517 kb on - strand, within MPMX20_04523 at 4732.589 kb on - strand at 4732.593 kb on + strand at 4732.612 kb on + strand at 4732.674 kb on + strand at 4732.680 kb on + strand at 4732.680 kb on + strand at 4732.680 kb on + strand at 4732.680 kb on + strand at 4732.682 kb on - strand at 4732.688 kb on - strand at 4732.688 kb on - strand at 4732.688 kb on - strand at 4732.688 kb on - strand at 4732.688 kb on - strand at 4732.688 kb on - strand at 4732.727 kb on + strand at 4732.727 kb on + strand at 4732.779 kb on - strand at 4732.835 kb on - strand at 4732.941 kb on - strand at 4732.941 kb on - strand at 4732.970 kb on - strand at 4733.077 kb on + strand at 4733.085 kb on - strand at 4733.152 kb on + strand at 4733.165 kb on + strand at 4733.168 kb on - strand at 4733.282 kb on + strand, within MPMX20_04524 at 4733.312 kb on - strand, within MPMX20_04524 at 4733.316 kb on - strand, within MPMX20_04524 at 4733.369 kb on + strand, within MPMX20_04524 at 4733.369 kb on - strand, within MPMX20_04524 at 4733.379 kb on + strand, within MPMX20_04524 at 4733.456 kb on + strand, within MPMX20_04524 at 4733.461 kb on + strand, within MPMX20_04524 at 4733.461 kb on + strand, within MPMX20_04524 at 4733.461 kb on + strand, within MPMX20_04524 at 4733.469 kb on - strand, within MPMX20_04524 at 4733.493 kb on + strand, within MPMX20_04524 at 4733.493 kb on + strand, within MPMX20_04524 at 4733.512 kb on + strand, within MPMX20_04524 at 4733.523 kb on + strand, within MPMX20_04524 at 4733.524 kb on - strand, within MPMX20_04524 at 4733.548 kb on + strand, within MPMX20_04524 at 4733.548 kb on + strand, within MPMX20_04524 at 4733.590 kb on + strand, within MPMX20_04524
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 4,730,606 + MPMX20_04522 0.21 -4.4 4,730,611 + MPMX20_04522 0.21 -2.2 4,730,624 - MPMX20_04522 0.23 -3.8 4,730,709 - MPMX20_04522 0.31 -2.9 4,730,709 - MPMX20_04522 0.31 -1.4 4,730,709 - MPMX20_04522 0.31 -3.6 4,730,719 + MPMX20_04522 0.32 -2.9 4,730,792 - MPMX20_04522 0.40 -0.9 4,730,792 - MPMX20_04522 0.40 -1.8 4,730,874 + MPMX20_04522 0.48 -0.1 4,730,897 - MPMX20_04522 0.50 -4.1 4,730,942 - MPMX20_04522 0.54 -3.8 4,730,983 + MPMX20_04522 0.59 -1.2 4,730,991 + MPMX20_04522 0.59 -2.9 4,730,999 - MPMX20_04522 0.60 -0.9 4,730,999 - MPMX20_04522 0.60 -3.7 4,731,001 + MPMX20_04522 0.60 -4.8 4,731,028 + MPMX20_04522 0.63 -2.8 4,731,030 + MPMX20_04522 0.63 -3.2 4,731,038 - MPMX20_04522 0.64 -4.0 4,731,038 - MPMX20_04522 0.64 -1.8 4,731,070 + MPMX20_04522 0.67 -2.5 4,731,094 - MPMX20_04522 0.70 -3.8 4,731,095 + MPMX20_04522 0.70 -1.5 4,731,185 - MPMX20_04522 0.79 -3.9 4,731,286 + MPMX20_04522 0.89 -0.9 4,731,286 + MPMX20_04522 0.89 -2.0 4,731,291 + MPMX20_04522 0.89 -3.4 4,731,291 + MPMX20_04522 0.89 -1.6 4,731,294 - MPMX20_04522 0.89 -4.0 4,731,343 + -2.1 4,731,359 - -3.1 4,731,406 + -2.7 4,731,414 - -0.1 4,731,469 + -2.1 4,731,542 + -5.0 4,731,550 - -2.2 4,731,572 + -4.5 4,731,640 + MPMX20_04523 0.13 -0.9 4,731,687 + MPMX20_04523 0.17 -3.8 4,731,687 + MPMX20_04523 0.17 -2.4 4,731,695 - MPMX20_04523 0.18 -3.8 4,731,697 + MPMX20_04523 0.18 -1.8 4,731,720 - MPMX20_04523 0.20 -3.4 4,731,771 + MPMX20_04523 0.25 -3.9 4,731,789 - MPMX20_04523 0.26 -0.7 4,731,807 - MPMX20_04523 0.28 -3.5 4,731,862 - MPMX20_04523 0.32 -3.9 4,731,867 - MPMX20_04523 0.33 -3.6 4,731,883 + MPMX20_04523 0.34 -6.0 4,731,886 - MPMX20_04523 0.35 -2.5 4,731,888 - MPMX20_04523 0.35 -4.2 4,732,070 - MPMX20_04523 0.51 -1.4 4,732,075 - MPMX20_04523 0.51 -0.9 4,732,189 + MPMX20_04523 0.61 -4.4 4,732,224 + MPMX20_04523 0.64 -2.2 4,732,232 - MPMX20_04523 0.65 -0.7 4,732,251 - MPMX20_04523 0.66 -2.9 4,732,298 - MPMX20_04523 0.70 -3.2 4,732,377 + MPMX20_04523 0.77 -4.0 4,732,482 - MPMX20_04523 0.86 -2.3 4,732,504 + MPMX20_04523 0.88 -4.3 4,732,509 + MPMX20_04523 0.89 -1.1 4,732,509 + MPMX20_04523 0.89 -3.0 4,732,509 + MPMX20_04523 0.89 -5.0 4,732,509 + MPMX20_04523 0.89 -4.6 4,732,517 - MPMX20_04523 0.89 -2.2 4,732,589 - -4.5 4,732,593 + -2.7 4,732,612 + +1.1 4,732,674 + -0.9 4,732,680 + -0.8 4,732,680 + +1.6 4,732,680 + +1.0 4,732,680 + +0.3 4,732,682 - +0.6 4,732,688 - -0.1 4,732,688 - -0.9 4,732,688 - -0.1 4,732,688 - -0.9 4,732,688 - +0.5 4,732,688 - -0.7 4,732,727 + +0.5 4,732,727 + +1.9 4,732,779 - -1.1 4,732,835 - -0.9 4,732,941 - -3.2 4,732,941 - -3.3 4,732,970 - -1.2 4,733,077 + -0.5 4,733,085 - -4.1 4,733,152 + -3.6 4,733,165 + -2.9 4,733,168 - -3.9 4,733,282 + MPMX20_04524 0.14 -4.5 4,733,312 - MPMX20_04524 0.15 -0.4 4,733,316 - MPMX20_04524 0.15 -3.8 4,733,369 + MPMX20_04524 0.17 -1.5 4,733,369 - MPMX20_04524 0.17 -1.9 4,733,379 + MPMX20_04524 0.18 -2.6 4,733,456 + MPMX20_04524 0.21 -2.7 4,733,461 + MPMX20_04524 0.21 -3.0 4,733,461 + MPMX20_04524 0.21 -2.6 4,733,461 + MPMX20_04524 0.21 -3.8 4,733,469 - MPMX20_04524 0.21 -4.3 4,733,493 + MPMX20_04524 0.22 -2.5 4,733,493 + MPMX20_04524 0.22 -3.0 4,733,512 + MPMX20_04524 0.23 -2.9 4,733,523 + MPMX20_04524 0.23 -3.3 4,733,524 - MPMX20_04524 0.23 -1.9 4,733,548 + MPMX20_04524 0.24 -2.2 4,733,548 + MPMX20_04524 0.24 -3.9 4,733,590 + MPMX20_04524 0.26 -2.8
Or see this region's nucleotide sequence