Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04520 and MPMX20_04521 are separated by 78 nucleotides MPMX20_04521 and MPMX20_04522 are separated by 9 nucleotides MPMX20_04522 and MPMX20_04523 are separated by 88 nucleotides
MPMX20_04520: MPMX20_04520 - Argininosuccinate lyase, at 4,728,160 to 4,729,533
_04520
MPMX20_04521: MPMX20_04521 - Acetylglutamate kinase, at 4,729,612 to 4,730,385
_04521
MPMX20_04522: MPMX20_04522 - N-acetyl-gamma-glutamyl-phosphate reductase, at 4,730,395 to 4,731,399
_04522
MPMX20_04523: MPMX20_04523 - Acetylornithine deacetylase, at 4,731,488 to 4,732,639
_04523
Position (kb)
4730
4731
4732 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3 at 4729.399 kb on + strand at 4729.489 kb on + strand at 4729.508 kb on + strand at 4729.528 kb on - strand at 4729.579 kb on + strand at 4729.579 kb on + strand at 4729.582 kb on - strand at 4729.584 kb on + strand at 4729.587 kb on - strand at 4729.592 kb on - strand at 4729.651 kb on - strand at 4729.651 kb on - strand at 4729.760 kb on + strand, within MPMX20_04521 at 4729.902 kb on + strand, within MPMX20_04521 at 4729.949 kb on + strand, within MPMX20_04521 at 4729.949 kb on - strand, within MPMX20_04521 at 4729.949 kb on - strand, within MPMX20_04521 at 4729.973 kb on + strand, within MPMX20_04521 at 4729.995 kb on + strand, within MPMX20_04521 at 4730.011 kb on - strand, within MPMX20_04521 at 4730.017 kb on - strand, within MPMX20_04521 at 4730.018 kb on + strand, within MPMX20_04521 at 4730.021 kb on - strand, within MPMX20_04521 at 4730.028 kb on + strand, within MPMX20_04521 at 4730.055 kb on + strand, within MPMX20_04521 at 4730.063 kb on - strand, within MPMX20_04521 at 4730.079 kb on + strand, within MPMX20_04521 at 4730.082 kb on - strand, within MPMX20_04521 at 4730.083 kb on - strand, within MPMX20_04521 at 4730.091 kb on - strand, within MPMX20_04521 at 4730.091 kb on - strand, within MPMX20_04521 at 4730.175 kb on + strand, within MPMX20_04521 at 4730.183 kb on + strand, within MPMX20_04521 at 4730.191 kb on - strand, within MPMX20_04521 at 4730.220 kb on + strand, within MPMX20_04521 at 4730.326 kb on + strand at 4730.334 kb on + strand at 4730.334 kb on + strand at 4730.344 kb on + strand at 4730.344 kb on + strand at 4730.344 kb on + strand at 4730.344 kb on + strand at 4730.344 kb on + strand at 4730.344 kb on + strand at 4730.344 kb on + strand at 4730.344 kb on + strand at 4730.349 kb on + strand at 4730.349 kb on + strand at 4730.352 kb on + strand at 4730.352 kb on + strand at 4730.352 kb on - strand at 4730.433 kb on + strand at 4730.443 kb on + strand at 4730.452 kb on - strand at 4730.476 kb on + strand at 4730.606 kb on + strand, within MPMX20_04522 at 4730.611 kb on + strand, within MPMX20_04522 at 4730.624 kb on - strand, within MPMX20_04522 at 4730.709 kb on - strand, within MPMX20_04522 at 4730.709 kb on - strand, within MPMX20_04522 at 4730.709 kb on - strand, within MPMX20_04522 at 4730.719 kb on + strand, within MPMX20_04522 at 4730.792 kb on - strand, within MPMX20_04522 at 4730.792 kb on - strand, within MPMX20_04522 at 4730.874 kb on + strand, within MPMX20_04522 at 4730.897 kb on - strand, within MPMX20_04522 at 4730.942 kb on - strand, within MPMX20_04522 at 4730.983 kb on + strand, within MPMX20_04522 at 4730.991 kb on + strand, within MPMX20_04522 at 4730.999 kb on - strand, within MPMX20_04522 at 4730.999 kb on - strand, within MPMX20_04522 at 4731.001 kb on + strand, within MPMX20_04522 at 4731.028 kb on + strand, within MPMX20_04522 at 4731.030 kb on + strand, within MPMX20_04522 at 4731.038 kb on - strand, within MPMX20_04522 at 4731.038 kb on - strand, within MPMX20_04522 at 4731.070 kb on + strand, within MPMX20_04522 at 4731.094 kb on - strand, within MPMX20_04522 at 4731.095 kb on + strand, within MPMX20_04522 at 4731.185 kb on - strand, within MPMX20_04522 at 4731.286 kb on + strand, within MPMX20_04522 at 4731.286 kb on + strand, within MPMX20_04522 at 4731.291 kb on + strand, within MPMX20_04522 at 4731.291 kb on + strand, within MPMX20_04522 at 4731.294 kb on - strand, within MPMX20_04522 at 4731.343 kb on + strand at 4731.359 kb on - strand at 4731.406 kb on + strand at 4731.414 kb on - strand at 4731.469 kb on + strand at 4731.542 kb on + strand at 4731.550 kb on - strand at 4731.572 kb on + strand at 4731.640 kb on + strand, within MPMX20_04523 at 4731.687 kb on + strand, within MPMX20_04523 at 4731.687 kb on + strand, within MPMX20_04523 at 4731.695 kb on - strand, within MPMX20_04523 at 4731.697 kb on + strand, within MPMX20_04523 at 4731.720 kb on - strand, within MPMX20_04523 at 4731.771 kb on + strand, within MPMX20_04523 at 4731.789 kb on - strand, within MPMX20_04523 at 4731.807 kb on - strand, within MPMX20_04523 at 4731.862 kb on - strand, within MPMX20_04523 at 4731.867 kb on - strand, within MPMX20_04523 at 4731.883 kb on + strand, within MPMX20_04523 at 4731.886 kb on - strand, within MPMX20_04523 at 4731.888 kb on - strand, within MPMX20_04523 at 4732.070 kb on - strand, within MPMX20_04523 at 4732.075 kb on - strand, within MPMX20_04523 at 4732.189 kb on + strand, within MPMX20_04523 at 4732.224 kb on + strand, within MPMX20_04523 at 4732.232 kb on - strand, within MPMX20_04523 at 4732.251 kb on - strand, within MPMX20_04523 at 4732.298 kb on - strand, within MPMX20_04523 at 4732.377 kb on + strand, within MPMX20_04523
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 4,729,399 + -4.4 4,729,489 + -3.5 4,729,508 + -4.4 4,729,528 - -1.2 4,729,579 + -0.7 4,729,579 + -2.4 4,729,582 - +0.9 4,729,584 + -2.6 4,729,587 - -1.0 4,729,592 - +3.5 4,729,651 - -0.9 4,729,651 - -2.7 4,729,760 + MPMX20_04521 0.19 -1.2 4,729,902 + MPMX20_04521 0.37 -1.5 4,729,949 + MPMX20_04521 0.44 -3.0 4,729,949 - MPMX20_04521 0.44 -0.9 4,729,949 - MPMX20_04521 0.44 -2.1 4,729,973 + MPMX20_04521 0.47 -3.2 4,729,995 + MPMX20_04521 0.49 -1.0 4,730,011 - MPMX20_04521 0.52 -2.9 4,730,017 - MPMX20_04521 0.52 -4.1 4,730,018 + MPMX20_04521 0.52 -0.1 4,730,021 - MPMX20_04521 0.53 -1.8 4,730,028 + MPMX20_04521 0.54 -1.1 4,730,055 + MPMX20_04521 0.57 -4.0 4,730,063 - MPMX20_04521 0.58 -4.1 4,730,079 + MPMX20_04521 0.60 -3.5 4,730,082 - MPMX20_04521 0.61 -3.2 4,730,083 - MPMX20_04521 0.61 -3.1 4,730,091 - MPMX20_04521 0.62 -3.4 4,730,091 - MPMX20_04521 0.62 -0.4 4,730,175 + MPMX20_04521 0.73 -2.9 4,730,183 + MPMX20_04521 0.74 -4.6 4,730,191 - MPMX20_04521 0.75 -4.3 4,730,220 + MPMX20_04521 0.79 -0.9 4,730,326 + -2.5 4,730,334 + -4.1 4,730,334 + -3.5 4,730,344 + -1.8 4,730,344 + -4.7 4,730,344 + -2.9 4,730,344 + -2.9 4,730,344 + -4.5 4,730,344 + -2.3 4,730,344 + -3.5 4,730,344 + -2.5 4,730,349 + -3.7 4,730,349 + -2.1 4,730,352 + -3.8 4,730,352 + -0.7 4,730,352 - -3.7 4,730,433 + -2.4 4,730,443 + -2.6 4,730,452 - -2.2 4,730,476 + -3.4 4,730,606 + MPMX20_04522 0.21 -4.4 4,730,611 + MPMX20_04522 0.21 -2.2 4,730,624 - MPMX20_04522 0.23 -3.8 4,730,709 - MPMX20_04522 0.31 -2.9 4,730,709 - MPMX20_04522 0.31 -1.4 4,730,709 - MPMX20_04522 0.31 -3.6 4,730,719 + MPMX20_04522 0.32 -2.9 4,730,792 - MPMX20_04522 0.40 -0.9 4,730,792 - MPMX20_04522 0.40 -1.8 4,730,874 + MPMX20_04522 0.48 -0.1 4,730,897 - MPMX20_04522 0.50 -4.1 4,730,942 - MPMX20_04522 0.54 -3.8 4,730,983 + MPMX20_04522 0.59 -1.2 4,730,991 + MPMX20_04522 0.59 -2.9 4,730,999 - MPMX20_04522 0.60 -0.9 4,730,999 - MPMX20_04522 0.60 -3.7 4,731,001 + MPMX20_04522 0.60 -4.8 4,731,028 + MPMX20_04522 0.63 -2.8 4,731,030 + MPMX20_04522 0.63 -3.2 4,731,038 - MPMX20_04522 0.64 -4.0 4,731,038 - MPMX20_04522 0.64 -1.8 4,731,070 + MPMX20_04522 0.67 -2.5 4,731,094 - MPMX20_04522 0.70 -3.8 4,731,095 + MPMX20_04522 0.70 -1.5 4,731,185 - MPMX20_04522 0.79 -3.9 4,731,286 + MPMX20_04522 0.89 -0.9 4,731,286 + MPMX20_04522 0.89 -2.0 4,731,291 + MPMX20_04522 0.89 -3.4 4,731,291 + MPMX20_04522 0.89 -1.6 4,731,294 - MPMX20_04522 0.89 -4.0 4,731,343 + -2.1 4,731,359 - -3.1 4,731,406 + -2.7 4,731,414 - -0.1 4,731,469 + -2.1 4,731,542 + -5.0 4,731,550 - -2.2 4,731,572 + -4.5 4,731,640 + MPMX20_04523 0.13 -0.9 4,731,687 + MPMX20_04523 0.17 -3.8 4,731,687 + MPMX20_04523 0.17 -2.4 4,731,695 - MPMX20_04523 0.18 -3.8 4,731,697 + MPMX20_04523 0.18 -1.8 4,731,720 - MPMX20_04523 0.20 -3.4 4,731,771 + MPMX20_04523 0.25 -3.9 4,731,789 - MPMX20_04523 0.26 -0.7 4,731,807 - MPMX20_04523 0.28 -3.5 4,731,862 - MPMX20_04523 0.32 -3.9 4,731,867 - MPMX20_04523 0.33 -3.6 4,731,883 + MPMX20_04523 0.34 -6.0 4,731,886 - MPMX20_04523 0.35 -2.5 4,731,888 - MPMX20_04523 0.35 -4.2 4,732,070 - MPMX20_04523 0.51 -1.4 4,732,075 - MPMX20_04523 0.51 -0.9 4,732,189 + MPMX20_04523 0.61 -4.4 4,732,224 + MPMX20_04523 0.64 -2.2 4,732,232 - MPMX20_04523 0.65 -0.7 4,732,251 - MPMX20_04523 0.66 -2.9 4,732,298 - MPMX20_04523 0.70 -3.2 4,732,377 + MPMX20_04523 0.77 -4.0
Or see this region's nucleotide sequence