Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04498

Experiment: D-Salicin (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04497 and MPMX20_04498 overlap by 4 nucleotidesMPMX20_04498 and MPMX20_04499 overlap by 1 nucleotides MPMX20_04497: MPMX20_04497 - HTH-type transcriptional regulator GltC, at 4,703,783 to 4,704,673 _04497 MPMX20_04498: MPMX20_04498 - L-threonine dehydratase biosynthetic IlvA, at 4,704,670 to 4,706,217 _04498 MPMX20_04499: MPMX20_04499 - Dihydroxy-acid dehydratase, at 4,706,217 to 4,708,067 _04499 Position (kb) 4704 4705 4706 4707Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4703.786 kb on + strandat 4703.786 kb on + strandat 4703.855 kb on + strandat 4703.855 kb on + strandat 4703.953 kb on + strand, within MPMX20_04497at 4704.011 kb on - strand, within MPMX20_04497at 4704.024 kb on + strand, within MPMX20_04497at 4704.032 kb on - strand, within MPMX20_04497at 4704.039 kb on + strand, within MPMX20_04497at 4704.234 kb on - strand, within MPMX20_04497at 4704.296 kb on + strand, within MPMX20_04497at 4704.296 kb on + strand, within MPMX20_04497at 4704.296 kb on + strand, within MPMX20_04497at 4704.296 kb on + strand, within MPMX20_04497at 4704.304 kb on - strand, within MPMX20_04497at 4704.304 kb on - strand, within MPMX20_04497at 4704.304 kb on - strand, within MPMX20_04497at 4704.304 kb on - strand, within MPMX20_04497at 4704.309 kb on - strand, within MPMX20_04497at 4704.345 kb on + strand, within MPMX20_04497at 4704.353 kb on - strand, within MPMX20_04497at 4704.390 kb on + strand, within MPMX20_04497at 4704.398 kb on - strand, within MPMX20_04497at 4704.470 kb on + strand, within MPMX20_04497at 4704.482 kb on + strand, within MPMX20_04497at 4704.495 kb on - strand, within MPMX20_04497at 4704.503 kb on - strand, within MPMX20_04497at 4704.539 kb on - strand, within MPMX20_04497at 4704.539 kb on - strand, within MPMX20_04497at 4704.539 kb on - strand, within MPMX20_04497at 4704.782 kb on - strandat 4704.782 kb on - strandat 4704.782 kb on - strandat 4704.782 kb on - strandat 4704.782 kb on - strandat 4704.838 kb on + strand, within MPMX20_04498at 4704.907 kb on + strand, within MPMX20_04498at 4704.915 kb on - strand, within MPMX20_04498at 4704.990 kb on + strand, within MPMX20_04498at 4704.994 kb on - strand, within MPMX20_04498at 4705.044 kb on + strand, within MPMX20_04498at 4705.065 kb on - strand, within MPMX20_04498at 4705.070 kb on - strand, within MPMX20_04498at 4705.096 kb on - strand, within MPMX20_04498at 4705.168 kb on - strand, within MPMX20_04498at 4705.226 kb on - strand, within MPMX20_04498at 4705.283 kb on - strand, within MPMX20_04498at 4705.314 kb on - strand, within MPMX20_04498at 4705.608 kb on + strand, within MPMX20_04498at 4705.623 kb on + strand, within MPMX20_04498at 4705.623 kb on + strand, within MPMX20_04498at 4705.680 kb on - strand, within MPMX20_04498at 4705.688 kb on + strand, within MPMX20_04498at 4705.719 kb on + strand, within MPMX20_04498at 4705.731 kb on + strand, within MPMX20_04498at 4705.759 kb on + strand, within MPMX20_04498at 4705.812 kb on + strand, within MPMX20_04498at 4705.820 kb on - strand, within MPMX20_04498at 4705.833 kb on - strand, within MPMX20_04498at 4705.833 kb on - strand, within MPMX20_04498at 4706.028 kb on + strand, within MPMX20_04498at 4706.028 kb on + strand, within MPMX20_04498at 4706.036 kb on - strand, within MPMX20_04498at 4706.036 kb on - strand, within MPMX20_04498at 4706.036 kb on - strand, within MPMX20_04498at 4706.036 kb on - strand, within MPMX20_04498at 4706.043 kb on - strand, within MPMX20_04498at 4706.080 kb on + strandat 4706.117 kb on + strandat 4706.117 kb on + strandat 4706.118 kb on + strandat 4706.125 kb on - strandat 4706.159 kb on + strandat 4706.162 kb on - strandat 4706.167 kb on - strandat 4706.167 kb on - strandat 4706.167 kb on - strandat 4706.291 kb on + strandat 4706.291 kb on + strandat 4706.331 kb on + strandat 4706.398 kb on - strandat 4706.407 kb on - strand, within MPMX20_04499at 4706.415 kb on - strand, within MPMX20_04499at 4706.492 kb on - strand, within MPMX20_04499at 4706.555 kb on - strand, within MPMX20_04499at 4706.622 kb on - strand, within MPMX20_04499at 4706.634 kb on + strand, within MPMX20_04499at 4706.691 kb on + strand, within MPMX20_04499at 4706.691 kb on + strand, within MPMX20_04499at 4706.699 kb on - strand, within MPMX20_04499at 4706.772 kb on - strand, within MPMX20_04499at 4706.799 kb on + strand, within MPMX20_04499at 4706.814 kb on - strand, within MPMX20_04499at 4706.828 kb on + strand, within MPMX20_04499at 4706.836 kb on - strand, within MPMX20_04499at 4706.850 kb on - strand, within MPMX20_04499at 4706.898 kb on + strand, within MPMX20_04499at 4706.898 kb on + strand, within MPMX20_04499at 4706.898 kb on + strand, within MPMX20_04499at 4706.906 kb on - strand, within MPMX20_04499at 4706.906 kb on - strand, within MPMX20_04499at 4706.985 kb on - strand, within MPMX20_04499at 4707.036 kb on - strand, within MPMX20_04499at 4707.038 kb on - strand, within MPMX20_04499at 4707.048 kb on + strand, within MPMX20_04499at 4707.095 kb on + strand, within MPMX20_04499at 4707.127 kb on + strand, within MPMX20_04499at 4707.127 kb on + strand, within MPMX20_04499at 4707.135 kb on - strand, within MPMX20_04499at 4707.135 kb on - strand, within MPMX20_04499at 4707.205 kb on + strand, within MPMX20_04499

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
remove
4,703,786 + -4.0
4,703,786 + -4.8
4,703,855 + -3.2
4,703,855 + -4.5
4,703,953 + MPMX20_04497 0.19 -0.9
4,704,011 - MPMX20_04497 0.26 -2.5
4,704,024 + MPMX20_04497 0.27 -4.0
4,704,032 - MPMX20_04497 0.28 -5.1
4,704,039 + MPMX20_04497 0.29 -2.6
4,704,234 - MPMX20_04497 0.51 -3.7
4,704,296 + MPMX20_04497 0.58 -2.8
4,704,296 + MPMX20_04497 0.58 -4.8
4,704,296 + MPMX20_04497 0.58 -4.4
4,704,296 + MPMX20_04497 0.58 -3.8
4,704,304 - MPMX20_04497 0.58 -2.8
4,704,304 - MPMX20_04497 0.58 -0.9
4,704,304 - MPMX20_04497 0.58 -1.8
4,704,304 - MPMX20_04497 0.58 -3.6
4,704,309 - MPMX20_04497 0.59 -3.2
4,704,345 + MPMX20_04497 0.63 -2.1
4,704,353 - MPMX20_04497 0.64 -2.7
4,704,390 + MPMX20_04497 0.68 -3.3
4,704,398 - MPMX20_04497 0.69 -3.9
4,704,470 + MPMX20_04497 0.77 -2.9
4,704,482 + MPMX20_04497 0.78 +0.9
4,704,495 - MPMX20_04497 0.80 -3.3
4,704,503 - MPMX20_04497 0.81 -2.6
4,704,539 - MPMX20_04497 0.85 -1.1
4,704,539 - MPMX20_04497 0.85 -3.1
4,704,539 - MPMX20_04497 0.85 -2.7
4,704,782 - -4.9
4,704,782 - -4.3
4,704,782 - -2.4
4,704,782 - -2.9
4,704,782 - -3.0
4,704,838 + MPMX20_04498 0.11 -3.0
4,704,907 + MPMX20_04498 0.15 -1.1
4,704,915 - MPMX20_04498 0.16 -1.8
4,704,990 + MPMX20_04498 0.21 -4.6
4,704,994 - MPMX20_04498 0.21 -5.0
4,705,044 + MPMX20_04498 0.24 -3.6
4,705,065 - MPMX20_04498 0.26 -4.9
4,705,070 - MPMX20_04498 0.26 +1.1
4,705,096 - MPMX20_04498 0.28 -1.2
4,705,168 - MPMX20_04498 0.32 -2.7
4,705,226 - MPMX20_04498 0.36 -3.5
4,705,283 - MPMX20_04498 0.40 -2.1
4,705,314 - MPMX20_04498 0.42 -1.0
4,705,608 + MPMX20_04498 0.61 -3.5
4,705,623 + MPMX20_04498 0.62 -2.2
4,705,623 + MPMX20_04498 0.62 -1.9
4,705,680 - MPMX20_04498 0.65 -2.6
4,705,688 + MPMX20_04498 0.66 -2.1
4,705,719 + MPMX20_04498 0.68 -2.4
4,705,731 + MPMX20_04498 0.69 -5.3
4,705,759 + MPMX20_04498 0.70 -3.7
4,705,812 + MPMX20_04498 0.74 -2.4
4,705,820 - MPMX20_04498 0.74 -0.9
4,705,833 - MPMX20_04498 0.75 -3.7
4,705,833 - MPMX20_04498 0.75 -3.5
4,706,028 + MPMX20_04498 0.88 -3.5
4,706,028 + MPMX20_04498 0.88 -4.7
4,706,036 - MPMX20_04498 0.88 -2.9
4,706,036 - MPMX20_04498 0.88 -1.7
4,706,036 - MPMX20_04498 0.88 -4.7
4,706,036 - MPMX20_04498 0.88 -3.8
4,706,043 - MPMX20_04498 0.89 -0.9
4,706,080 + -2.7
4,706,117 + -1.2
4,706,117 + -3.7
4,706,118 + -2.0
4,706,125 - -3.0
4,706,159 + -2.2
4,706,162 - -0.9
4,706,167 - -2.1
4,706,167 - -2.5
4,706,167 - -3.3
4,706,291 + -5.0
4,706,291 + -2.8
4,706,331 + -4.4
4,706,398 - -1.5
4,706,407 - MPMX20_04499 0.10 -1.7
4,706,415 - MPMX20_04499 0.11 -3.2
4,706,492 - MPMX20_04499 0.15 -4.0
4,706,555 - MPMX20_04499 0.18 -4.8
4,706,622 - MPMX20_04499 0.22 -2.7
4,706,634 + MPMX20_04499 0.23 -1.8
4,706,691 + MPMX20_04499 0.26 -2.1
4,706,691 + MPMX20_04499 0.26 -0.7
4,706,699 - MPMX20_04499 0.26 -4.0
4,706,772 - MPMX20_04499 0.30 -4.4
4,706,799 + MPMX20_04499 0.31 +0.9
4,706,814 - MPMX20_04499 0.32 -4.0
4,706,828 + MPMX20_04499 0.33 -5.4
4,706,836 - MPMX20_04499 0.33 -2.6
4,706,850 - MPMX20_04499 0.34 -4.7
4,706,898 + MPMX20_04499 0.37 -3.5
4,706,898 + MPMX20_04499 0.37 -4.3
4,706,898 + MPMX20_04499 0.37 -2.4
4,706,906 - MPMX20_04499 0.37 -4.0
4,706,906 - MPMX20_04499 0.37 -5.2
4,706,985 - MPMX20_04499 0.41 -2.7
4,707,036 - MPMX20_04499 0.44 -3.5
4,707,038 - MPMX20_04499 0.44 -4.4
4,707,048 + MPMX20_04499 0.45 -4.4
4,707,095 + MPMX20_04499 0.47 -3.6
4,707,127 + MPMX20_04499 0.49 -1.7
4,707,127 + MPMX20_04499 0.49 -1.8
4,707,135 - MPMX20_04499 0.50 -5.3
4,707,135 - MPMX20_04499 0.50 -3.9
4,707,205 + MPMX20_04499 0.53 -3.1

Or see this region's nucleotide sequence