Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04496 and MPMX20_04497 are separated by 153 nucleotides MPMX20_04497 and MPMX20_04498 overlap by 4 nucleotides
MPMX20_04496: MPMX20_04496 - Ketol-acid reductoisomerase (NADP(+)), at 4,702,154 to 4,703,629
_04496
MPMX20_04497: MPMX20_04497 - HTH-type transcriptional regulator GltC, at 4,703,783 to 4,704,673
_04497
MPMX20_04498: MPMX20_04498 - L-threonine dehydratase biosynthetic IlvA, at 4,704,670 to 4,706,217
_04498
Position (kb)
4703
4704
4705 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 4702.886 kb on + strand, within MPMX20_04496 at 4702.983 kb on + strand, within MPMX20_04496 at 4702.991 kb on - strand, within MPMX20_04496 at 4703.069 kb on + strand, within MPMX20_04496 at 4703.071 kb on - strand, within MPMX20_04496 at 4703.243 kb on + strand, within MPMX20_04496 at 4703.251 kb on - strand, within MPMX20_04496 at 4703.251 kb on - strand, within MPMX20_04496 at 4703.259 kb on + strand, within MPMX20_04496 at 4703.329 kb on + strand, within MPMX20_04496 at 4703.405 kb on + strand, within MPMX20_04496 at 4703.429 kb on - strand, within MPMX20_04496 at 4703.431 kb on + strand, within MPMX20_04496 at 4703.447 kb on - strand, within MPMX20_04496 at 4703.472 kb on - strand, within MPMX20_04496 at 4703.473 kb on - strand, within MPMX20_04496 at 4703.476 kb on + strand, within MPMX20_04496 at 4703.514 kb on + strand at 4703.568 kb on - strand at 4703.611 kb on + strand at 4703.634 kb on - strand at 4703.638 kb on + strand at 4703.645 kb on + strand at 4703.645 kb on + strand at 4703.786 kb on + strand at 4703.786 kb on + strand at 4703.855 kb on + strand at 4703.855 kb on + strand at 4703.953 kb on + strand, within MPMX20_04497 at 4704.011 kb on - strand, within MPMX20_04497 at 4704.024 kb on + strand, within MPMX20_04497 at 4704.032 kb on - strand, within MPMX20_04497 at 4704.039 kb on + strand, within MPMX20_04497 at 4704.234 kb on - strand, within MPMX20_04497 at 4704.296 kb on + strand, within MPMX20_04497 at 4704.296 kb on + strand, within MPMX20_04497 at 4704.296 kb on + strand, within MPMX20_04497 at 4704.296 kb on + strand, within MPMX20_04497 at 4704.304 kb on - strand, within MPMX20_04497 at 4704.304 kb on - strand, within MPMX20_04497 at 4704.304 kb on - strand, within MPMX20_04497 at 4704.304 kb on - strand, within MPMX20_04497 at 4704.309 kb on - strand, within MPMX20_04497 at 4704.345 kb on + strand, within MPMX20_04497 at 4704.353 kb on - strand, within MPMX20_04497 at 4704.390 kb on + strand, within MPMX20_04497 at 4704.398 kb on - strand, within MPMX20_04497 at 4704.470 kb on + strand, within MPMX20_04497 at 4704.482 kb on + strand, within MPMX20_04497 at 4704.495 kb on - strand, within MPMX20_04497 at 4704.503 kb on - strand, within MPMX20_04497 at 4704.539 kb on - strand, within MPMX20_04497 at 4704.539 kb on - strand, within MPMX20_04497 at 4704.539 kb on - strand, within MPMX20_04497 at 4704.782 kb on - strand at 4704.782 kb on - strand at 4704.782 kb on - strand at 4704.782 kb on - strand at 4704.782 kb on - strand at 4704.838 kb on + strand, within MPMX20_04498 at 4704.907 kb on + strand, within MPMX20_04498 at 4704.915 kb on - strand, within MPMX20_04498 at 4704.990 kb on + strand, within MPMX20_04498 at 4704.994 kb on - strand, within MPMX20_04498 at 4705.044 kb on + strand, within MPMX20_04498 at 4705.065 kb on - strand, within MPMX20_04498 at 4705.070 kb on - strand, within MPMX20_04498 at 4705.096 kb on - strand, within MPMX20_04498 at 4705.168 kb on - strand, within MPMX20_04498 at 4705.226 kb on - strand, within MPMX20_04498 at 4705.283 kb on - strand, within MPMX20_04498 at 4705.314 kb on - strand, within MPMX20_04498 at 4705.608 kb on + strand, within MPMX20_04498 at 4705.623 kb on + strand, within MPMX20_04498 at 4705.623 kb on + strand, within MPMX20_04498
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 4,702,886 + MPMX20_04496 0.50 -2.0 4,702,983 + MPMX20_04496 0.56 -1.7 4,702,991 - MPMX20_04496 0.57 -2.9 4,703,069 + MPMX20_04496 0.62 -3.0 4,703,071 - MPMX20_04496 0.62 -4.2 4,703,243 + MPMX20_04496 0.74 -1.2 4,703,251 - MPMX20_04496 0.74 -5.4 4,703,251 - MPMX20_04496 0.74 -3.0 4,703,259 + MPMX20_04496 0.75 -2.8 4,703,329 + MPMX20_04496 0.80 -4.7 4,703,405 + MPMX20_04496 0.85 -1.2 4,703,429 - MPMX20_04496 0.86 -0.1 4,703,431 + MPMX20_04496 0.87 -3.0 4,703,447 - MPMX20_04496 0.88 -1.7 4,703,472 - MPMX20_04496 0.89 -1.9 4,703,473 - MPMX20_04496 0.89 -1.4 4,703,476 + MPMX20_04496 0.90 -0.9 4,703,514 + -4.3 4,703,568 - -4.5 4,703,611 + -3.2 4,703,634 - -2.3 4,703,638 + -4.5 4,703,645 + -3.2 4,703,645 + -3.2 4,703,786 + -4.0 4,703,786 + -4.8 4,703,855 + -3.2 4,703,855 + -4.5 4,703,953 + MPMX20_04497 0.19 -0.9 4,704,011 - MPMX20_04497 0.26 -2.5 4,704,024 + MPMX20_04497 0.27 -4.0 4,704,032 - MPMX20_04497 0.28 -5.1 4,704,039 + MPMX20_04497 0.29 -2.6 4,704,234 - MPMX20_04497 0.51 -3.7 4,704,296 + MPMX20_04497 0.58 -2.8 4,704,296 + MPMX20_04497 0.58 -4.8 4,704,296 + MPMX20_04497 0.58 -4.4 4,704,296 + MPMX20_04497 0.58 -3.8 4,704,304 - MPMX20_04497 0.58 -2.8 4,704,304 - MPMX20_04497 0.58 -0.9 4,704,304 - MPMX20_04497 0.58 -1.8 4,704,304 - MPMX20_04497 0.58 -3.6 4,704,309 - MPMX20_04497 0.59 -3.2 4,704,345 + MPMX20_04497 0.63 -2.1 4,704,353 - MPMX20_04497 0.64 -2.7 4,704,390 + MPMX20_04497 0.68 -3.3 4,704,398 - MPMX20_04497 0.69 -3.9 4,704,470 + MPMX20_04497 0.77 -2.9 4,704,482 + MPMX20_04497 0.78 +0.9 4,704,495 - MPMX20_04497 0.80 -3.3 4,704,503 - MPMX20_04497 0.81 -2.6 4,704,539 - MPMX20_04497 0.85 -1.1 4,704,539 - MPMX20_04497 0.85 -3.1 4,704,539 - MPMX20_04497 0.85 -2.7 4,704,782 - -4.9 4,704,782 - -4.3 4,704,782 - -2.4 4,704,782 - -2.9 4,704,782 - -3.0 4,704,838 + MPMX20_04498 0.11 -3.0 4,704,907 + MPMX20_04498 0.15 -1.1 4,704,915 - MPMX20_04498 0.16 -1.8 4,704,990 + MPMX20_04498 0.21 -4.6 4,704,994 - MPMX20_04498 0.21 -5.0 4,705,044 + MPMX20_04498 0.24 -3.6 4,705,065 - MPMX20_04498 0.26 -4.9 4,705,070 - MPMX20_04498 0.26 +1.1 4,705,096 - MPMX20_04498 0.28 -1.2 4,705,168 - MPMX20_04498 0.32 -2.7 4,705,226 - MPMX20_04498 0.36 -3.5 4,705,283 - MPMX20_04498 0.40 -2.1 4,705,314 - MPMX20_04498 0.42 -1.0 4,705,608 + MPMX20_04498 0.61 -3.5 4,705,623 + MPMX20_04498 0.62 -2.2 4,705,623 + MPMX20_04498 0.62 -1.9
Or see this region's nucleotide sequence