Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04467

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04465 and MPMX20_04466 overlap by 4 nucleotidesMPMX20_04466 and MPMX20_04467 overlap by 4 nucleotidesMPMX20_04467 and MPMX20_04468 are separated by 374 nucleotidesMPMX20_04468 and MPMX20_04469 are separated by 43 nucleotides MPMX20_04465: MPMX20_04465 - Tyrosine recombinase XerC, at 4,669,548 to 4,670,450 _04465 MPMX20_04466: MPMX20_04466 - hypothetical protein, at 4,670,447 to 4,671,154 _04466 MPMX20_04467: MPMX20_04467 - Diaminopimelate epimerase, at 4,671,151 to 4,671,975 _04467 MPMX20_04468: MPMX20_04468 - Iron-sulfur cluster assembly protein CyaY, at 4,672,350 to 4,672,670 _04468 MPMX20_04469: MPMX20_04469 - Adenylate cyclase, at 4,672,714 to 4,675,257 _04469 Position (kb) 4671 4672Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4670.169 kb on - strand, within MPMX20_04465at 4670.180 kb on - strand, within MPMX20_04465at 4670.197 kb on + strand, within MPMX20_04465at 4670.240 kb on - strand, within MPMX20_04465at 4670.371 kb on + strandat 4670.385 kb on - strandat 4670.404 kb on - strandat 4670.404 kb on - strandat 4670.404 kb on - strandat 4670.481 kb on + strandat 4670.493 kb on - strandat 4670.518 kb on - strand, within MPMX20_04466at 4670.535 kb on - strand, within MPMX20_04466at 4670.561 kb on + strand, within MPMX20_04466at 4670.652 kb on - strand, within MPMX20_04466at 4670.662 kb on + strand, within MPMX20_04466at 4670.746 kb on - strand, within MPMX20_04466at 4670.757 kb on - strand, within MPMX20_04466at 4670.788 kb on + strand, within MPMX20_04466at 4670.852 kb on + strand, within MPMX20_04466at 4671.009 kb on - strand, within MPMX20_04466at 4671.194 kb on + strandat 4671.194 kb on + strandat 4671.194 kb on + strandat 4671.194 kb on + strandat 4671.194 kb on + strandat 4671.202 kb on - strandat 4671.202 kb on - strandat 4671.211 kb on + strandat 4671.219 kb on - strandat 4671.280 kb on + strand, within MPMX20_04467at 4671.288 kb on - strand, within MPMX20_04467at 4671.288 kb on - strand, within MPMX20_04467at 4671.288 kb on - strand, within MPMX20_04467at 4671.462 kb on - strand, within MPMX20_04467at 4671.474 kb on + strand, within MPMX20_04467at 4671.503 kb on + strand, within MPMX20_04467at 4671.526 kb on + strand, within MPMX20_04467at 4671.534 kb on - strand, within MPMX20_04467at 4671.534 kb on - strand, within MPMX20_04467at 4671.595 kb on + strand, within MPMX20_04467at 4671.596 kb on + strand, within MPMX20_04467at 4671.611 kb on - strand, within MPMX20_04467at 4671.653 kb on + strand, within MPMX20_04467at 4671.740 kb on - strand, within MPMX20_04467at 4671.776 kb on - strand, within MPMX20_04467at 4671.776 kb on - strand, within MPMX20_04467at 4671.841 kb on - strand, within MPMX20_04467at 4671.866 kb on - strand, within MPMX20_04467at 4671.891 kb on + strand, within MPMX20_04467at 4672.073 kb on + strandat 4672.081 kb on - strandat 4672.081 kb on - strandat 4672.093 kb on + strandat 4672.101 kb on - strandat 4672.101 kb on - strandat 4672.141 kb on + strandat 4672.151 kb on + strandat 4672.151 kb on + strandat 4672.151 kb on + strandat 4672.173 kb on - strandat 4672.310 kb on + strandat 4672.318 kb on - strandat 4672.384 kb on + strand, within MPMX20_04468at 4672.384 kb on + strand, within MPMX20_04468at 4672.384 kb on + strand, within MPMX20_04468at 4672.384 kb on + strand, within MPMX20_04468at 4672.384 kb on + strand, within MPMX20_04468at 4672.385 kb on - strand, within MPMX20_04468at 4672.392 kb on - strand, within MPMX20_04468at 4672.392 kb on - strand, within MPMX20_04468at 4672.392 kb on - strand, within MPMX20_04468at 4672.392 kb on - strand, within MPMX20_04468at 4672.404 kb on - strand, within MPMX20_04468at 4672.461 kb on + strand, within MPMX20_04468at 4672.467 kb on + strand, within MPMX20_04468at 4672.526 kb on + strand, within MPMX20_04468at 4672.526 kb on + strand, within MPMX20_04468at 4672.574 kb on + strand, within MPMX20_04468at 4672.607 kb on + strand, within MPMX20_04468at 4672.628 kb on + strand, within MPMX20_04468at 4672.628 kb on + strand, within MPMX20_04468at 4672.680 kb on + strandat 4672.692 kb on + strandat 4672.693 kb on - strandat 4672.747 kb on + strandat 4672.754 kb on - strandat 4672.944 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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4,670,169 - MPMX20_04465 0.69 -1.3
4,670,180 - MPMX20_04465 0.70 -2.2
4,670,197 + MPMX20_04465 0.72 -0.1
4,670,240 - MPMX20_04465 0.77 -1.0
4,670,371 + -0.4
4,670,385 - -0.7
4,670,404 - +0.9
4,670,404 - -2.1
4,670,404 - -0.9
4,670,481 + -0.3
4,670,493 - +0.3
4,670,518 - MPMX20_04466 0.10 -0.8
4,670,535 - MPMX20_04466 0.12 -0.7
4,670,561 + MPMX20_04466 0.16 -0.5
4,670,652 - MPMX20_04466 0.29 -0.1
4,670,662 + MPMX20_04466 0.30 +1.1
4,670,746 - MPMX20_04466 0.42 +0.9
4,670,757 - MPMX20_04466 0.44 -0.5
4,670,788 + MPMX20_04466 0.48 -1.1
4,670,852 + MPMX20_04466 0.57 -2.1
4,671,009 - MPMX20_04466 0.79 +0.4
4,671,194 + -2.8
4,671,194 + -2.3
4,671,194 + -1.2
4,671,194 + -2.3
4,671,194 + -1.4
4,671,202 - -1.3
4,671,202 - -2.6
4,671,211 + -1.4
4,671,219 - -1.5
4,671,280 + MPMX20_04467 0.16 -1.7
4,671,288 - MPMX20_04467 0.17 -2.4
4,671,288 - MPMX20_04467 0.17 -1.9
4,671,288 - MPMX20_04467 0.17 +0.9
4,671,462 - MPMX20_04467 0.38 -3.2
4,671,474 + MPMX20_04467 0.39 -1.8
4,671,503 + MPMX20_04467 0.43 -1.4
4,671,526 + MPMX20_04467 0.45 -1.7
4,671,534 - MPMX20_04467 0.46 -2.1
4,671,534 - MPMX20_04467 0.46 -1.5
4,671,595 + MPMX20_04467 0.54 -0.9
4,671,596 + MPMX20_04467 0.54 -0.4
4,671,611 - MPMX20_04467 0.56 -2.2
4,671,653 + MPMX20_04467 0.61 -2.8
4,671,740 - MPMX20_04467 0.71 -1.8
4,671,776 - MPMX20_04467 0.76 -1.0
4,671,776 - MPMX20_04467 0.76 -2.9
4,671,841 - MPMX20_04467 0.84 -0.7
4,671,866 - MPMX20_04467 0.87 -1.7
4,671,891 + MPMX20_04467 0.90 -1.1
4,672,073 + -2.2
4,672,081 - -0.1
4,672,081 - -0.2
4,672,093 + +1.9
4,672,101 - +0.5
4,672,101 - +0.4
4,672,141 + -0.3
4,672,151 + -1.3
4,672,151 + -0.8
4,672,151 + -1.3
4,672,173 - -0.4
4,672,310 + +0.6
4,672,318 - -0.4
4,672,384 + MPMX20_04468 0.11 -0.4
4,672,384 + MPMX20_04468 0.11 -0.5
4,672,384 + MPMX20_04468 0.11 +0.6
4,672,384 + MPMX20_04468 0.11 +0.2
4,672,384 + MPMX20_04468 0.11 +0.2
4,672,385 - MPMX20_04468 0.11 +0.0
4,672,392 - MPMX20_04468 0.13 +0.8
4,672,392 - MPMX20_04468 0.13 +0.7
4,672,392 - MPMX20_04468 0.13 +1.6
4,672,392 - MPMX20_04468 0.13 +0.6
4,672,404 - MPMX20_04468 0.17 +0.1
4,672,461 + MPMX20_04468 0.35 -1.7
4,672,467 + MPMX20_04468 0.36 +1.4
4,672,526 + MPMX20_04468 0.55 -0.4
4,672,526 + MPMX20_04468 0.55 +1.2
4,672,574 + MPMX20_04468 0.70 -1.7
4,672,607 + MPMX20_04468 0.80 +2.4
4,672,628 + MPMX20_04468 0.87 -0.1
4,672,628 + MPMX20_04468 0.87 -0.7
4,672,680 + +0.1
4,672,692 + -2.3
4,672,693 - -0.9
4,672,747 + +0.4
4,672,754 - -0.0
4,672,944 - +0.2

Or see this region's nucleotide sequence