Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04462 and MPMX20_04463 are separated by 357 nucleotides MPMX20_04463 and MPMX20_04464 are separated by 80 nucleotides MPMX20_04464 and MPMX20_04465 overlap by 1 nucleotides
MPMX20_04462: MPMX20_04462 - Magnesium transport protein CorA, at 4,665,281 to 4,666,231
_04462
MPMX20_04463: MPMX20_04463 - DNA helicase II, at 4,666,589 to 4,668,751
_04463
MPMX20_04464: MPMX20_04464 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 4,668,832 to 4,669,548
_04464
MPMX20_04465: MPMX20_04465 - Tyrosine recombinase XerC, at 4,669,548 to 4,670,450
_04465
Position (kb)
4666
4667
4668
4669 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4665.678 kb on - strand, within MPMX20_04462 at 4665.724 kb on - strand, within MPMX20_04462 at 4665.774 kb on + strand, within MPMX20_04462 at 4665.774 kb on + strand, within MPMX20_04462 at 4665.868 kb on + strand, within MPMX20_04462 at 4665.876 kb on - strand, within MPMX20_04462 at 4665.915 kb on - strand, within MPMX20_04462 at 4665.915 kb on - strand, within MPMX20_04462 at 4665.922 kb on + strand, within MPMX20_04462 at 4665.970 kb on - strand, within MPMX20_04462 at 4666.145 kb on + strand at 4666.163 kb on - strand at 4666.176 kb on - strand at 4666.182 kb on + strand at 4666.190 kb on - strand at 4666.213 kb on + strand at 4666.301 kb on + strand at 4666.319 kb on - strand at 4666.330 kb on + strand at 4666.360 kb on - strand at 4666.382 kb on - strand at 4666.440 kb on + strand at 4666.464 kb on - strand at 4666.615 kb on - strand at 4666.625 kb on - strand at 4666.667 kb on + strand at 4666.719 kb on - strand at 4666.799 kb on + strand at 4666.816 kb on + strand, within MPMX20_04463 at 4666.820 kb on + strand, within MPMX20_04463 at 4666.844 kb on - strand, within MPMX20_04463 at 4666.844 kb on - strand, within MPMX20_04463 at 4666.871 kb on + strand, within MPMX20_04463 at 4666.887 kb on - strand, within MPMX20_04463 at 4666.897 kb on - strand, within MPMX20_04463 at 4666.994 kb on - strand, within MPMX20_04463 at 4667.031 kb on - strand, within MPMX20_04463 at 4667.054 kb on + strand, within MPMX20_04463 at 4667.054 kb on + strand, within MPMX20_04463 at 4667.062 kb on - strand, within MPMX20_04463 at 4667.091 kb on + strand, within MPMX20_04463 at 4667.114 kb on - strand, within MPMX20_04463 at 4667.274 kb on - strand, within MPMX20_04463 at 4667.362 kb on + strand, within MPMX20_04463 at 4667.370 kb on - strand, within MPMX20_04463 at 4667.544 kb on + strand, within MPMX20_04463 at 4667.552 kb on - strand, within MPMX20_04463 at 4667.666 kb on - strand, within MPMX20_04463 at 4667.680 kb on - strand, within MPMX20_04463 at 4667.707 kb on + strand, within MPMX20_04463 at 4667.755 kb on - strand, within MPMX20_04463 at 4667.760 kb on - strand, within MPMX20_04463 at 4667.963 kb on + strand, within MPMX20_04463 at 4668.018 kb on - strand, within MPMX20_04463 at 4668.026 kb on - strand, within MPMX20_04463 at 4668.053 kb on + strand, within MPMX20_04463 at 4668.120 kb on + strand, within MPMX20_04463 at 4668.181 kb on + strand, within MPMX20_04463 at 4668.199 kb on - strand, within MPMX20_04463 at 4668.199 kb on - strand, within MPMX20_04463 at 4668.199 kb on - strand, within MPMX20_04463 at 4668.214 kb on + strand, within MPMX20_04463 at 4668.222 kb on - strand, within MPMX20_04463 at 4668.400 kb on - strand, within MPMX20_04463 at 4668.400 kb on - strand, within MPMX20_04463 at 4668.599 kb on + strand at 4668.668 kb on - strand at 4668.736 kb on + strand at 4668.879 kb on + strand at 4668.910 kb on - strand, within MPMX20_04464 at 4668.989 kb on - strand, within MPMX20_04464 at 4669.122 kb on + strand, within MPMX20_04464 at 4669.130 kb on - strand, within MPMX20_04464 at 4669.251 kb on + strand, within MPMX20_04464 at 4669.251 kb on + strand, within MPMX20_04464 at 4669.259 kb on - strand, within MPMX20_04464 at 4669.259 kb on - strand, within MPMX20_04464 at 4669.259 kb on - strand, within MPMX20_04464 at 4669.284 kb on + strand, within MPMX20_04464 at 4669.324 kb on - strand, within MPMX20_04464 at 4669.324 kb on - strand, within MPMX20_04464 at 4669.356 kb on - strand, within MPMX20_04464 at 4669.369 kb on + strand, within MPMX20_04464 at 4669.408 kb on + strand, within MPMX20_04464 at 4669.439 kb on - strand, within MPMX20_04464 at 4669.457 kb on + strand, within MPMX20_04464 at 4669.470 kb on - strand, within MPMX20_04464 at 4669.508 kb on - strand at 4669.508 kb on - strand at 4669.508 kb on - strand at 4669.520 kb on - strand at 4669.534 kb on - strand at 4669.618 kb on + strand at 4669.618 kb on + strand at 4669.626 kb on - strand at 4669.650 kb on + strand, within MPMX20_04465 at 4669.658 kb on - strand, within MPMX20_04465 at 4669.743 kb on + strand, within MPMX20_04465
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 4,665,678 - MPMX20_04462 0.42 -0.4 4,665,724 - MPMX20_04462 0.47 +0.3 4,665,774 + MPMX20_04462 0.52 +0.3 4,665,774 + MPMX20_04462 0.52 -0.6 4,665,868 + MPMX20_04462 0.62 +0.5 4,665,876 - MPMX20_04462 0.63 -1.0 4,665,915 - MPMX20_04462 0.67 -1.1 4,665,915 - MPMX20_04462 0.67 +1.3 4,665,922 + MPMX20_04462 0.67 +1.2 4,665,970 - MPMX20_04462 0.72 -0.2 4,666,145 + -0.8 4,666,163 - -0.2 4,666,176 - -0.0 4,666,182 + -0.1 4,666,190 - -1.6 4,666,213 + -0.6 4,666,301 + +0.6 4,666,319 - -0.0 4,666,330 + -1.1 4,666,360 - -1.1 4,666,382 - -0.2 4,666,440 + +0.4 4,666,464 - -0.6 4,666,615 - +0.2 4,666,625 - +1.1 4,666,667 + -0.0 4,666,719 - -0.3 4,666,799 + +0.9 4,666,816 + MPMX20_04463 0.10 +0.5 4,666,820 + MPMX20_04463 0.11 -1.5 4,666,844 - MPMX20_04463 0.12 +0.3 4,666,844 - MPMX20_04463 0.12 +0.3 4,666,871 + MPMX20_04463 0.13 -1.7 4,666,887 - MPMX20_04463 0.14 -2.3 4,666,897 - MPMX20_04463 0.14 -1.6 4,666,994 - MPMX20_04463 0.19 -2.1 4,667,031 - MPMX20_04463 0.20 -1.1 4,667,054 + MPMX20_04463 0.21 -0.1 4,667,054 + MPMX20_04463 0.21 -1.9 4,667,062 - MPMX20_04463 0.22 -1.7 4,667,091 + MPMX20_04463 0.23 -0.1 4,667,114 - MPMX20_04463 0.24 -2.3 4,667,274 - MPMX20_04463 0.32 -0.9 4,667,362 + MPMX20_04463 0.36 -0.4 4,667,370 - MPMX20_04463 0.36 -1.4 4,667,544 + MPMX20_04463 0.44 -1.1 4,667,552 - MPMX20_04463 0.45 -0.2 4,667,666 - MPMX20_04463 0.50 -2.2 4,667,680 - MPMX20_04463 0.50 -1.7 4,667,707 + MPMX20_04463 0.52 -2.1 4,667,755 - MPMX20_04463 0.54 -0.9 4,667,760 - MPMX20_04463 0.54 +0.6 4,667,963 + MPMX20_04463 0.64 -0.1 4,668,018 - MPMX20_04463 0.66 -1.6 4,668,026 - MPMX20_04463 0.66 -1.4 4,668,053 + MPMX20_04463 0.68 -2.7 4,668,120 + MPMX20_04463 0.71 -0.9 4,668,181 + MPMX20_04463 0.74 -0.1 4,668,199 - MPMX20_04463 0.74 -3.1 4,668,199 - MPMX20_04463 0.74 -1.8 4,668,199 - MPMX20_04463 0.74 -1.2 4,668,214 + MPMX20_04463 0.75 +2.5 4,668,222 - MPMX20_04463 0.75 -1.3 4,668,400 - MPMX20_04463 0.84 -0.4 4,668,400 - MPMX20_04463 0.84 -1.9 4,668,599 + -2.4 4,668,668 - -0.6 4,668,736 + -0.1 4,668,879 + -0.2 4,668,910 - MPMX20_04464 0.11 +1.0 4,668,989 - MPMX20_04464 0.22 +0.5 4,669,122 + MPMX20_04464 0.40 +0.6 4,669,130 - MPMX20_04464 0.42 -0.1 4,669,251 + MPMX20_04464 0.58 -0.4 4,669,251 + MPMX20_04464 0.58 +1.7 4,669,259 - MPMX20_04464 0.60 +0.6 4,669,259 - MPMX20_04464 0.60 +0.7 4,669,259 - MPMX20_04464 0.60 +1.0 4,669,284 + MPMX20_04464 0.63 +0.7 4,669,324 - MPMX20_04464 0.69 +1.9 4,669,324 - MPMX20_04464 0.69 +1.3 4,669,356 - MPMX20_04464 0.73 -0.1 4,669,369 + MPMX20_04464 0.75 -0.9 4,669,408 + MPMX20_04464 0.80 +0.2 4,669,439 - MPMX20_04464 0.85 +1.3 4,669,457 + MPMX20_04464 0.87 +1.1 4,669,470 - MPMX20_04464 0.89 +0.0 4,669,508 - +0.4 4,669,508 - -0.2 4,669,508 - +0.8 4,669,520 - +0.2 4,669,534 - -1.1 4,669,618 + +0.0 4,669,618 + +0.2 4,669,626 - -0.5 4,669,650 + MPMX20_04465 0.11 -2.0 4,669,658 - MPMX20_04465 0.12 -1.5 4,669,743 + MPMX20_04465 0.22 -0.2
Or see this region's nucleotide sequence