Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04440 and MPMX20_04441 overlap by 4 nucleotides MPMX20_04441 and MPMX20_04442 are separated by 41 nucleotides MPMX20_04442 and MPMX20_04443 are separated by 2 nucleotides MPMX20_04443 and MPMX20_04444 are separated by 3 nucleotides MPMX20_04444 and MPMX20_04445 are separated by 76 nucleotides
MPMX20_04440: MPMX20_04440 - Transcription antitermination protein RfaH, at 4,643,933 to 4,644,424
_04440
MPMX20_04441: MPMX20_04441 - 3'-5' ssDNA/RNA exonuclease TatD, at 4,644,421 to 4,645,203
_04441
MPMX20_04442: MPMX20_04442 - Sec-independent protein translocase protein TatC, at 4,645,245 to 4,646,015
_04442
MPMX20_04443: MPMX20_04443 - Sec-independent protein translocase protein TatB, at 4,646,018 to 4,646,560
_04443
MPMX20_04444: MPMX20_04444 - Sec-independent protein translocase protein TatA, at 4,646,564 to 4,646,818
_04444
MPMX20_04445: MPMX20_04445 - putative protein kinase UbiB, at 4,646,895 to 4,648,535
_04445
Position (kb)
4645
4646
4647 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 4644.291 kb on + strand, within MPMX20_04440 at 4644.359 kb on - strand, within MPMX20_04440 at 4644.383 kb on + strand at 4644.383 kb on + strand at 4644.402 kb on + strand at 4644.419 kb on + strand at 4644.419 kb on + strand at 4644.489 kb on + strand at 4644.522 kb on + strand, within MPMX20_04441 at 4644.637 kb on - strand, within MPMX20_04441 at 4644.648 kb on + strand, within MPMX20_04441 at 4644.648 kb on + strand, within MPMX20_04441 at 4644.648 kb on + strand, within MPMX20_04441 at 4644.656 kb on - strand, within MPMX20_04441 at 4644.656 kb on - strand, within MPMX20_04441 at 4644.656 kb on - strand, within MPMX20_04441 at 4644.693 kb on + strand, within MPMX20_04441 at 4644.701 kb on - strand, within MPMX20_04441 at 4644.715 kb on + strand, within MPMX20_04441 at 4644.738 kb on + strand, within MPMX20_04441 at 4644.753 kb on + strand, within MPMX20_04441 at 4644.813 kb on + strand, within MPMX20_04441 at 4644.832 kb on - strand, within MPMX20_04441 at 4644.986 kb on - strand, within MPMX20_04441 at 4645.046 kb on + strand, within MPMX20_04441 at 4645.120 kb on - strand, within MPMX20_04441 at 4645.146 kb on - strand at 4645.182 kb on + strand at 4645.182 kb on + strand at 4645.185 kb on - strand at 4645.190 kb on - strand at 4645.223 kb on - strand at 4645.242 kb on + strand at 4645.341 kb on - strand, within MPMX20_04442 at 4645.343 kb on + strand, within MPMX20_04442 at 4645.435 kb on - strand, within MPMX20_04442 at 4645.451 kb on + strand, within MPMX20_04442 at 4645.459 kb on + strand, within MPMX20_04442 at 4645.477 kb on - strand, within MPMX20_04442 at 4645.477 kb on - strand, within MPMX20_04442 at 4645.560 kb on + strand, within MPMX20_04442 at 4645.575 kb on + strand, within MPMX20_04442 at 4645.617 kb on + strand, within MPMX20_04442 at 4645.619 kb on - strand, within MPMX20_04442 at 4645.644 kb on - strand, within MPMX20_04442 at 4645.665 kb on - strand, within MPMX20_04442 at 4645.737 kb on + strand, within MPMX20_04442 at 4645.737 kb on + strand, within MPMX20_04442 at 4645.849 kb on - strand, within MPMX20_04442 at 4645.893 kb on - strand, within MPMX20_04442 at 4645.970 kb on + strand at 4645.978 kb on - strand at 4646.215 kb on - strand, within MPMX20_04443 at 4646.342 kb on - strand, within MPMX20_04443 at 4646.401 kb on - strand, within MPMX20_04443 at 4646.457 kb on - strand, within MPMX20_04443 at 4646.457 kb on - strand, within MPMX20_04443 at 4646.457 kb on - strand, within MPMX20_04443 at 4646.514 kb on - strand at 4646.562 kb on + strand at 4646.562 kb on + strand at 4646.635 kb on - strand, within MPMX20_04444 at 4646.661 kb on + strand, within MPMX20_04444 at 4646.821 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 4,644,291 + MPMX20_04440 0.73 -0.9 4,644,359 - MPMX20_04440 0.87 -1.3 4,644,383 + +0.1 4,644,383 + -0.8 4,644,402 + +1.9 4,644,419 + -0.8 4,644,419 + +0.0 4,644,489 + -0.0 4,644,522 + MPMX20_04441 0.13 -0.9 4,644,637 - MPMX20_04441 0.28 +0.3 4,644,648 + MPMX20_04441 0.29 -2.3 4,644,648 + MPMX20_04441 0.29 -0.1 4,644,648 + MPMX20_04441 0.29 -1.0 4,644,656 - MPMX20_04441 0.30 -0.1 4,644,656 - MPMX20_04441 0.30 -0.1 4,644,656 - MPMX20_04441 0.30 -0.2 4,644,693 + MPMX20_04441 0.35 -0.9 4,644,701 - MPMX20_04441 0.36 +0.2 4,644,715 + MPMX20_04441 0.38 -0.5 4,644,738 + MPMX20_04441 0.40 -0.5 4,644,753 + MPMX20_04441 0.42 +1.4 4,644,813 + MPMX20_04441 0.50 -0.8 4,644,832 - MPMX20_04441 0.52 +0.3 4,644,986 - MPMX20_04441 0.72 -0.1 4,645,046 + MPMX20_04441 0.80 +0.1 4,645,120 - MPMX20_04441 0.89 -0.0 4,645,146 - -0.3 4,645,182 + -1.2 4,645,182 + +0.8 4,645,185 - +0.2 4,645,190 - +0.4 4,645,223 - +2.0 4,645,242 + -2.7 4,645,341 - MPMX20_04442 0.12 -4.3 4,645,343 + MPMX20_04442 0.13 -2.7 4,645,435 - MPMX20_04442 0.25 -2.4 4,645,451 + MPMX20_04442 0.27 -3.9 4,645,459 + MPMX20_04442 0.28 -3.0 4,645,477 - MPMX20_04442 0.30 -1.8 4,645,477 - MPMX20_04442 0.30 -1.9 4,645,560 + MPMX20_04442 0.41 -2.7 4,645,575 + MPMX20_04442 0.43 -3.6 4,645,617 + MPMX20_04442 0.48 -2.3 4,645,619 - MPMX20_04442 0.49 -3.8 4,645,644 - MPMX20_04442 0.52 -4.4 4,645,665 - MPMX20_04442 0.54 -1.8 4,645,737 + MPMX20_04442 0.64 -2.2 4,645,737 + MPMX20_04442 0.64 -2.1 4,645,849 - MPMX20_04442 0.78 -4.8 4,645,893 - MPMX20_04442 0.84 -3.1 4,645,970 + -1.4 4,645,978 - -2.6 4,646,215 - MPMX20_04443 0.36 -0.3 4,646,342 - MPMX20_04443 0.60 -4.5 4,646,401 - MPMX20_04443 0.71 -1.4 4,646,457 - MPMX20_04443 0.81 -3.6 4,646,457 - MPMX20_04443 0.81 -3.3 4,646,457 - MPMX20_04443 0.81 -2.3 4,646,514 - -1.7 4,646,562 + -0.1 4,646,562 + -2.1 4,646,635 - MPMX20_04444 0.28 -3.1 4,646,661 + MPMX20_04444 0.38 -4.3 4,646,821 - -0.9
Or see this region's nucleotide sequence