Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04442

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04440 and MPMX20_04441 overlap by 4 nucleotidesMPMX20_04441 and MPMX20_04442 are separated by 41 nucleotidesMPMX20_04442 and MPMX20_04443 are separated by 2 nucleotidesMPMX20_04443 and MPMX20_04444 are separated by 3 nucleotidesMPMX20_04444 and MPMX20_04445 are separated by 76 nucleotides MPMX20_04440: MPMX20_04440 - Transcription antitermination protein RfaH, at 4,643,933 to 4,644,424 _04440 MPMX20_04441: MPMX20_04441 - 3'-5' ssDNA/RNA exonuclease TatD, at 4,644,421 to 4,645,203 _04441 MPMX20_04442: MPMX20_04442 - Sec-independent protein translocase protein TatC, at 4,645,245 to 4,646,015 _04442 MPMX20_04443: MPMX20_04443 - Sec-independent protein translocase protein TatB, at 4,646,018 to 4,646,560 _04443 MPMX20_04444: MPMX20_04444 - Sec-independent protein translocase protein TatA, at 4,646,564 to 4,646,818 _04444 MPMX20_04445: MPMX20_04445 - putative protein kinase UbiB, at 4,646,895 to 4,648,535 _04445 Position (kb) 4645 4646 4647Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4644.291 kb on + strand, within MPMX20_04440at 4644.359 kb on - strand, within MPMX20_04440at 4644.383 kb on + strandat 4644.383 kb on + strandat 4644.402 kb on + strandat 4644.419 kb on + strandat 4644.419 kb on + strandat 4644.489 kb on + strandat 4644.522 kb on + strand, within MPMX20_04441at 4644.637 kb on - strand, within MPMX20_04441at 4644.648 kb on + strand, within MPMX20_04441at 4644.648 kb on + strand, within MPMX20_04441at 4644.648 kb on + strand, within MPMX20_04441at 4644.656 kb on - strand, within MPMX20_04441at 4644.656 kb on - strand, within MPMX20_04441at 4644.656 kb on - strand, within MPMX20_04441at 4644.693 kb on + strand, within MPMX20_04441at 4644.701 kb on - strand, within MPMX20_04441at 4644.715 kb on + strand, within MPMX20_04441at 4644.738 kb on + strand, within MPMX20_04441at 4644.753 kb on + strand, within MPMX20_04441at 4644.813 kb on + strand, within MPMX20_04441at 4644.832 kb on - strand, within MPMX20_04441at 4644.986 kb on - strand, within MPMX20_04441at 4645.046 kb on + strand, within MPMX20_04441at 4645.120 kb on - strand, within MPMX20_04441at 4645.146 kb on - strandat 4645.182 kb on + strandat 4645.182 kb on + strandat 4645.185 kb on - strandat 4645.190 kb on - strandat 4645.223 kb on - strandat 4645.242 kb on + strandat 4645.341 kb on - strand, within MPMX20_04442at 4645.343 kb on + strand, within MPMX20_04442at 4645.435 kb on - strand, within MPMX20_04442at 4645.451 kb on + strand, within MPMX20_04442at 4645.459 kb on + strand, within MPMX20_04442at 4645.477 kb on - strand, within MPMX20_04442at 4645.477 kb on - strand, within MPMX20_04442at 4645.560 kb on + strand, within MPMX20_04442at 4645.575 kb on + strand, within MPMX20_04442at 4645.617 kb on + strand, within MPMX20_04442at 4645.619 kb on - strand, within MPMX20_04442at 4645.644 kb on - strand, within MPMX20_04442at 4645.665 kb on - strand, within MPMX20_04442at 4645.737 kb on + strand, within MPMX20_04442at 4645.737 kb on + strand, within MPMX20_04442at 4645.849 kb on - strand, within MPMX20_04442at 4645.893 kb on - strand, within MPMX20_04442at 4645.970 kb on + strandat 4645.978 kb on - strandat 4646.215 kb on - strand, within MPMX20_04443at 4646.342 kb on - strand, within MPMX20_04443at 4646.401 kb on - strand, within MPMX20_04443at 4646.457 kb on - strand, within MPMX20_04443at 4646.457 kb on - strand, within MPMX20_04443at 4646.457 kb on - strand, within MPMX20_04443at 4646.514 kb on - strandat 4646.562 kb on + strandat 4646.562 kb on + strandat 4646.635 kb on - strand, within MPMX20_04444at 4646.661 kb on + strand, within MPMX20_04444at 4646.821 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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4,644,291 + MPMX20_04440 0.73 -0.9
4,644,359 - MPMX20_04440 0.87 -1.3
4,644,383 + +0.1
4,644,383 + -0.8
4,644,402 + +1.9
4,644,419 + -0.8
4,644,419 + +0.0
4,644,489 + -0.0
4,644,522 + MPMX20_04441 0.13 -0.9
4,644,637 - MPMX20_04441 0.28 +0.3
4,644,648 + MPMX20_04441 0.29 -2.3
4,644,648 + MPMX20_04441 0.29 -0.1
4,644,648 + MPMX20_04441 0.29 -1.0
4,644,656 - MPMX20_04441 0.30 -0.1
4,644,656 - MPMX20_04441 0.30 -0.1
4,644,656 - MPMX20_04441 0.30 -0.2
4,644,693 + MPMX20_04441 0.35 -0.9
4,644,701 - MPMX20_04441 0.36 +0.2
4,644,715 + MPMX20_04441 0.38 -0.5
4,644,738 + MPMX20_04441 0.40 -0.5
4,644,753 + MPMX20_04441 0.42 +1.4
4,644,813 + MPMX20_04441 0.50 -0.8
4,644,832 - MPMX20_04441 0.52 +0.3
4,644,986 - MPMX20_04441 0.72 -0.1
4,645,046 + MPMX20_04441 0.80 +0.1
4,645,120 - MPMX20_04441 0.89 -0.0
4,645,146 - -0.3
4,645,182 + -1.2
4,645,182 + +0.8
4,645,185 - +0.2
4,645,190 - +0.4
4,645,223 - +2.0
4,645,242 + -2.7
4,645,341 - MPMX20_04442 0.12 -4.3
4,645,343 + MPMX20_04442 0.13 -2.7
4,645,435 - MPMX20_04442 0.25 -2.4
4,645,451 + MPMX20_04442 0.27 -3.9
4,645,459 + MPMX20_04442 0.28 -3.0
4,645,477 - MPMX20_04442 0.30 -1.8
4,645,477 - MPMX20_04442 0.30 -1.9
4,645,560 + MPMX20_04442 0.41 -2.7
4,645,575 + MPMX20_04442 0.43 -3.6
4,645,617 + MPMX20_04442 0.48 -2.3
4,645,619 - MPMX20_04442 0.49 -3.8
4,645,644 - MPMX20_04442 0.52 -4.4
4,645,665 - MPMX20_04442 0.54 -1.8
4,645,737 + MPMX20_04442 0.64 -2.2
4,645,737 + MPMX20_04442 0.64 -2.1
4,645,849 - MPMX20_04442 0.78 -4.8
4,645,893 - MPMX20_04442 0.84 -3.1
4,645,970 + -1.4
4,645,978 - -2.6
4,646,215 - MPMX20_04443 0.36 -0.3
4,646,342 - MPMX20_04443 0.60 -4.5
4,646,401 - MPMX20_04443 0.71 -1.4
4,646,457 - MPMX20_04443 0.81 -3.6
4,646,457 - MPMX20_04443 0.81 -3.3
4,646,457 - MPMX20_04443 0.81 -2.3
4,646,514 - -1.7
4,646,562 + -0.1
4,646,562 + -2.1
4,646,635 - MPMX20_04444 0.28 -3.1
4,646,661 + MPMX20_04444 0.38 -4.3
4,646,821 - -0.9

Or see this region's nucleotide sequence