Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02513

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02512 and MPMX20_02513 are separated by 10 nucleotidesMPMX20_02513 and MPMX20_02514 overlap by 1 nucleotidesMPMX20_02514 and MPMX20_02515 are separated by 43 nucleotides MPMX20_02512: MPMX20_02512 - Tryptophan biosynthesis protein TrpCF, at 2,654,474 to 2,655,832 _02512 MPMX20_02513: MPMX20_02513 - Tryptophan synthase beta chain, at 2,655,843 to 2,657,036 _02513 MPMX20_02514: MPMX20_02514 - Tryptophan synthase alpha chain, at 2,657,036 to 2,657,845 _02514 MPMX20_02515: MPMX20_02515 - Alcohol dehydrogenase, at 2,657,889 to 2,658,896 _02515 Position (kb) 2655 2656 2657 2658Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2654.861 kb on - strand, within MPMX20_02512at 2654.872 kb on - strand, within MPMX20_02512at 2654.937 kb on + strand, within MPMX20_02512at 2654.945 kb on - strand, within MPMX20_02512at 2654.973 kb on - strand, within MPMX20_02512at 2655.035 kb on - strand, within MPMX20_02512at 2655.048 kb on + strand, within MPMX20_02512at 2655.061 kb on - strand, within MPMX20_02512at 2655.090 kb on + strand, within MPMX20_02512at 2655.132 kb on + strand, within MPMX20_02512at 2655.142 kb on - strand, within MPMX20_02512at 2655.155 kb on - strand, within MPMX20_02512at 2655.284 kb on - strand, within MPMX20_02512at 2655.327 kb on + strand, within MPMX20_02512at 2655.335 kb on - strand, within MPMX20_02512at 2655.393 kb on + strand, within MPMX20_02512at 2655.469 kb on + strand, within MPMX20_02512at 2655.485 kb on + strand, within MPMX20_02512at 2655.498 kb on - strand, within MPMX20_02512at 2655.516 kb on - strand, within MPMX20_02512at 2655.522 kb on + strand, within MPMX20_02512at 2655.545 kb on + strand, within MPMX20_02512at 2655.601 kb on - strand, within MPMX20_02512at 2655.614 kb on + strand, within MPMX20_02512at 2655.637 kb on - strand, within MPMX20_02512at 2655.658 kb on - strand, within MPMX20_02512at 2655.658 kb on - strand, within MPMX20_02512at 2655.665 kb on + strand, within MPMX20_02512at 2655.665 kb on + strand, within MPMX20_02512at 2655.673 kb on - strand, within MPMX20_02512at 2655.873 kb on - strandat 2655.873 kb on - strandat 2656.027 kb on + strand, within MPMX20_02513at 2656.027 kb on + strand, within MPMX20_02513at 2656.035 kb on - strand, within MPMX20_02513at 2656.035 kb on - strand, within MPMX20_02513at 2656.035 kb on - strand, within MPMX20_02513at 2656.035 kb on - strand, within MPMX20_02513at 2656.113 kb on + strand, within MPMX20_02513at 2656.126 kb on - strand, within MPMX20_02513at 2656.177 kb on - strand, within MPMX20_02513at 2656.179 kb on + strand, within MPMX20_02513at 2656.179 kb on + strand, within MPMX20_02513at 2656.187 kb on - strand, within MPMX20_02513at 2656.187 kb on - strand, within MPMX20_02513at 2656.187 kb on - strand, within MPMX20_02513at 2656.187 kb on - strand, within MPMX20_02513at 2656.187 kb on - strand, within MPMX20_02513at 2656.187 kb on - strand, within MPMX20_02513at 2656.200 kb on + strand, within MPMX20_02513at 2656.200 kb on + strand, within MPMX20_02513at 2656.208 kb on - strand, within MPMX20_02513at 2656.208 kb on - strand, within MPMX20_02513at 2656.298 kb on - strand, within MPMX20_02513at 2656.298 kb on - strand, within MPMX20_02513at 2656.308 kb on - strand, within MPMX20_02513at 2656.337 kb on + strand, within MPMX20_02513at 2656.397 kb on + strand, within MPMX20_02513at 2656.403 kb on + strand, within MPMX20_02513at 2656.543 kb on + strand, within MPMX20_02513at 2656.552 kb on - strand, within MPMX20_02513at 2656.617 kb on + strand, within MPMX20_02513at 2656.619 kb on - strand, within MPMX20_02513at 2656.619 kb on - strand, within MPMX20_02513at 2656.660 kb on - strand, within MPMX20_02513at 2656.730 kb on + strand, within MPMX20_02513at 2656.730 kb on + strand, within MPMX20_02513at 2656.738 kb on - strand, within MPMX20_02513at 2656.738 kb on - strand, within MPMX20_02513at 2656.738 kb on - strand, within MPMX20_02513at 2656.845 kb on - strand, within MPMX20_02513at 2656.874 kb on + strand, within MPMX20_02513at 2656.884 kb on + strand, within MPMX20_02513at 2656.884 kb on + strand, within MPMX20_02513at 2656.892 kb on - strand, within MPMX20_02513at 2656.892 kb on - strand, within MPMX20_02513at 2656.960 kb on + strandat 2657.063 kb on - strandat 2657.090 kb on + strandat 2657.163 kb on - strand, within MPMX20_02514at 2657.163 kb on - strand, within MPMX20_02514at 2657.183 kb on - strand, within MPMX20_02514at 2657.233 kb on - strand, within MPMX20_02514at 2657.233 kb on - strand, within MPMX20_02514at 2657.233 kb on - strand, within MPMX20_02514at 2657.259 kb on + strand, within MPMX20_02514at 2657.340 kb on + strand, within MPMX20_02514at 2657.344 kb on - strand, within MPMX20_02514at 2657.576 kb on + strand, within MPMX20_02514at 2657.724 kb on + strand, within MPMX20_02514at 2657.775 kb on + strandat 2657.780 kb on + strandat 2657.783 kb on - strandat 2657.840 kb on + strandat 2657.861 kb on + strandat 2657.925 kb on - strandat 2657.939 kb on + strandat 2657.947 kb on - strandat 2657.969 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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2,654,861 - MPMX20_02512 0.28 -2.6
2,654,872 - MPMX20_02512 0.29 -2.8
2,654,937 + MPMX20_02512 0.34 -1.8
2,654,945 - MPMX20_02512 0.35 -2.8
2,654,973 - MPMX20_02512 0.37 -3.4
2,655,035 - MPMX20_02512 0.41 -3.0
2,655,048 + MPMX20_02512 0.42 -0.4
2,655,061 - MPMX20_02512 0.43 -0.8
2,655,090 + MPMX20_02512 0.45 -2.1
2,655,132 + MPMX20_02512 0.48 -1.4
2,655,142 - MPMX20_02512 0.49 -3.5
2,655,155 - MPMX20_02512 0.50 -2.0
2,655,284 - MPMX20_02512 0.60 -1.3
2,655,327 + MPMX20_02512 0.63 -2.2
2,655,335 - MPMX20_02512 0.63 -3.4
2,655,393 + MPMX20_02512 0.68 -2.0
2,655,469 + MPMX20_02512 0.73 -1.5
2,655,485 + MPMX20_02512 0.74 -3.3
2,655,498 - MPMX20_02512 0.75 -2.1
2,655,516 - MPMX20_02512 0.77 +0.1
2,655,522 + MPMX20_02512 0.77 -1.9
2,655,545 + MPMX20_02512 0.79 -0.8
2,655,601 - MPMX20_02512 0.83 -3.1
2,655,614 + MPMX20_02512 0.84 -0.9
2,655,637 - MPMX20_02512 0.86 -0.5
2,655,658 - MPMX20_02512 0.87 -2.3
2,655,658 - MPMX20_02512 0.87 -2.4
2,655,665 + MPMX20_02512 0.88 -2.1
2,655,665 + MPMX20_02512 0.88 -3.3
2,655,673 - MPMX20_02512 0.88 -0.5
2,655,873 - -1.3
2,655,873 - -2.8
2,656,027 + MPMX20_02513 0.15 -2.6
2,656,027 + MPMX20_02513 0.15 -1.8
2,656,035 - MPMX20_02513 0.16 -1.6
2,656,035 - MPMX20_02513 0.16 -3.4
2,656,035 - MPMX20_02513 0.16 -1.9
2,656,035 - MPMX20_02513 0.16 -3.3
2,656,113 + MPMX20_02513 0.23 -2.4
2,656,126 - MPMX20_02513 0.24 -2.9
2,656,177 - MPMX20_02513 0.28 -3.4
2,656,179 + MPMX20_02513 0.28 -1.2
2,656,179 + MPMX20_02513 0.28 -1.7
2,656,187 - MPMX20_02513 0.29 -2.5
2,656,187 - MPMX20_02513 0.29 -3.6
2,656,187 - MPMX20_02513 0.29 -3.4
2,656,187 - MPMX20_02513 0.29 -1.9
2,656,187 - MPMX20_02513 0.29 -1.3
2,656,187 - MPMX20_02513 0.29 -2.6
2,656,200 + MPMX20_02513 0.30 +0.1
2,656,200 + MPMX20_02513 0.30 -2.6
2,656,208 - MPMX20_02513 0.31 -3.4
2,656,208 - MPMX20_02513 0.31 +1.1
2,656,298 - MPMX20_02513 0.38 -2.1
2,656,298 - MPMX20_02513 0.38 -2.1
2,656,308 - MPMX20_02513 0.39 -3.5
2,656,337 + MPMX20_02513 0.41 -1.1
2,656,397 + MPMX20_02513 0.46 -3.7
2,656,403 + MPMX20_02513 0.47 -1.8
2,656,543 + MPMX20_02513 0.59 -2.5
2,656,552 - MPMX20_02513 0.59 -3.2
2,656,617 + MPMX20_02513 0.65 -3.8
2,656,619 - MPMX20_02513 0.65 -2.6
2,656,619 - MPMX20_02513 0.65 -5.4
2,656,660 - MPMX20_02513 0.68 -2.5
2,656,730 + MPMX20_02513 0.74 -4.7
2,656,730 + MPMX20_02513 0.74 -1.4
2,656,738 - MPMX20_02513 0.75 -3.9
2,656,738 - MPMX20_02513 0.75 -2.7
2,656,738 - MPMX20_02513 0.75 -3.3
2,656,845 - MPMX20_02513 0.84 -2.9
2,656,874 + MPMX20_02513 0.86 -1.4
2,656,884 + MPMX20_02513 0.87 -3.9
2,656,884 + MPMX20_02513 0.87 -2.8
2,656,892 - MPMX20_02513 0.88 -1.3
2,656,892 - MPMX20_02513 0.88 -2.8
2,656,960 + -2.2
2,657,063 - -2.6
2,657,090 + -2.4
2,657,163 - MPMX20_02514 0.16 -1.8
2,657,163 - MPMX20_02514 0.16 -4.8
2,657,183 - MPMX20_02514 0.18 -2.1
2,657,233 - MPMX20_02514 0.24 -2.4
2,657,233 - MPMX20_02514 0.24 -1.4
2,657,233 - MPMX20_02514 0.24 -2.8
2,657,259 + MPMX20_02514 0.28 -3.1
2,657,340 + MPMX20_02514 0.38 -2.2
2,657,344 - MPMX20_02514 0.38 -4.3
2,657,576 + MPMX20_02514 0.67 -3.3
2,657,724 + MPMX20_02514 0.85 -4.4
2,657,775 + -2.6
2,657,780 + -2.4
2,657,783 - -1.9
2,657,840 + +0.2
2,657,861 + -0.3
2,657,925 - -0.8
2,657,939 + +0.1
2,657,947 - +0.1
2,657,969 + -0.1

Or see this region's nucleotide sequence