Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01029

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01028 and MPMX20_01029 are separated by 126 nucleotidesMPMX20_01029 and MPMX20_01030 are separated by 183 nucleotides MPMX20_01028: MPMX20_01028 - ATP-dependent Clp protease proteolytic subunit, at 1,081,816 to 1,082,439 _01028 MPMX20_01029: MPMX20_01029 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,082,566 to 1,083,840 _01029 MPMX20_01030: MPMX20_01030 - Lon protease, at 1,084,024 to 1,086,378 _01030 Position (kb) 1082 1083 1084Strain fitness (log2 ratio) -3 -2 -1 0 1at 1081.634 kb on - strandat 1081.634 kb on - strandat 1081.634 kb on - strandat 1081.634 kb on - strandat 1081.634 kb on - strandat 1081.709 kb on - strandat 1081.713 kb on + strandat 1081.713 kb on + strandat 1081.721 kb on - strandat 1081.721 kb on - strandat 1081.721 kb on - strandat 1081.721 kb on - strandat 1081.721 kb on - strandat 1081.767 kb on + strandat 1081.775 kb on - strandat 1081.826 kb on - strandat 1081.834 kb on + strandat 1081.866 kb on - strandat 1081.884 kb on + strand, within MPMX20_01028at 1081.892 kb on - strand, within MPMX20_01028at 1081.976 kb on - strand, within MPMX20_01028at 1082.108 kb on + strand, within MPMX20_01028at 1082.175 kb on + strand, within MPMX20_01028at 1082.175 kb on + strand, within MPMX20_01028at 1082.175 kb on + strand, within MPMX20_01028at 1082.175 kb on + strand, within MPMX20_01028at 1082.237 kb on - strand, within MPMX20_01028at 1082.344 kb on - strand, within MPMX20_01028at 1082.530 kb on - strandat 1082.535 kb on + strandat 1082.573 kb on - strandat 1082.607 kb on - strandat 1082.665 kb on + strandat 1082.665 kb on + strandat 1082.726 kb on - strand, within MPMX20_01029at 1082.839 kb on + strand, within MPMX20_01029at 1082.847 kb on - strand, within MPMX20_01029at 1082.847 kb on - strand, within MPMX20_01029at 1082.885 kb on + strand, within MPMX20_01029at 1082.885 kb on + strand, within MPMX20_01029at 1082.885 kb on + strand, within MPMX20_01029at 1082.885 kb on + strand, within MPMX20_01029at 1082.885 kb on + strand, within MPMX20_01029at 1082.885 kb on + strand, within MPMX20_01029at 1082.893 kb on - strand, within MPMX20_01029at 1082.999 kb on + strand, within MPMX20_01029at 1083.017 kb on - strand, within MPMX20_01029at 1083.284 kb on - strand, within MPMX20_01029at 1083.393 kb on - strand, within MPMX20_01029at 1083.434 kb on - strand, within MPMX20_01029at 1083.531 kb on + strand, within MPMX20_01029at 1083.539 kb on - strand, within MPMX20_01029at 1083.573 kb on + strand, within MPMX20_01029at 1083.713 kb on - strandat 1083.783 kb on + strandat 1083.940 kb on - strandat 1084.028 kb on + strandat 1084.078 kb on + strandat 1084.091 kb on - strandat 1084.107 kb on - strandat 1084.107 kb on - strandat 1084.291 kb on - strand, within MPMX20_01030at 1084.442 kb on - strand, within MPMX20_01030at 1084.472 kb on - strand, within MPMX20_01030at 1084.489 kb on + strand, within MPMX20_01030at 1084.504 kb on - strand, within MPMX20_01030at 1084.537 kb on - strand, within MPMX20_01030at 1084.641 kb on + strand, within MPMX20_01030at 1084.760 kb on - strand, within MPMX20_01030

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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1,081,634 - -0.4
1,081,634 - -1.2
1,081,634 - -1.0
1,081,634 - +0.0
1,081,634 - -2.0
1,081,709 - -1.5
1,081,713 + -0.4
1,081,713 + -0.3
1,081,721 - +0.0
1,081,721 - -1.0
1,081,721 - -2.2
1,081,721 - -0.5
1,081,721 - -2.5
1,081,767 + -0.3
1,081,775 - -0.2
1,081,826 - -0.4
1,081,834 + -1.4
1,081,866 - -1.7
1,081,884 + MPMX20_01028 0.11 -1.4
1,081,892 - MPMX20_01028 0.12 -1.5
1,081,976 - MPMX20_01028 0.26 -1.7
1,082,108 + MPMX20_01028 0.47 -1.5
1,082,175 + MPMX20_01028 0.58 -1.2
1,082,175 + MPMX20_01028 0.58 -1.2
1,082,175 + MPMX20_01028 0.58 -2.1
1,082,175 + MPMX20_01028 0.58 -2.5
1,082,237 - MPMX20_01028 0.67 -2.3
1,082,344 - MPMX20_01028 0.85 -1.0
1,082,530 - -0.4
1,082,535 + +1.6
1,082,573 - -1.4
1,082,607 - -0.1
1,082,665 + -2.1
1,082,665 + -2.1
1,082,726 - MPMX20_01029 0.13 -2.5
1,082,839 + MPMX20_01029 0.21 -1.4
1,082,847 - MPMX20_01029 0.22 -1.4
1,082,847 - MPMX20_01029 0.22 +0.5
1,082,885 + MPMX20_01029 0.25 -2.5
1,082,885 + MPMX20_01029 0.25 -2.5
1,082,885 + MPMX20_01029 0.25 -2.3
1,082,885 + MPMX20_01029 0.25 -2.5
1,082,885 + MPMX20_01029 0.25 -1.0
1,082,885 + MPMX20_01029 0.25 +0.0
1,082,893 - MPMX20_01029 0.26 -3.3
1,082,999 + MPMX20_01029 0.34 -2.2
1,083,017 - MPMX20_01029 0.35 -0.2
1,083,284 - MPMX20_01029 0.56 -0.7
1,083,393 - MPMX20_01029 0.65 -1.2
1,083,434 - MPMX20_01029 0.68 -2.2
1,083,531 + MPMX20_01029 0.76 -0.4
1,083,539 - MPMX20_01029 0.76 -0.8
1,083,573 + MPMX20_01029 0.79 -1.7
1,083,713 - -1.3
1,083,783 + -1.2
1,083,940 - -0.1
1,084,028 + -3.1
1,084,078 + -3.5
1,084,091 - -2.5
1,084,107 - -2.5
1,084,107 - -2.2
1,084,291 - MPMX20_01030 0.11 -0.7
1,084,442 - MPMX20_01030 0.18 -3.2
1,084,472 - MPMX20_01030 0.19 -1.9
1,084,489 + MPMX20_01030 0.20 -3.2
1,084,504 - MPMX20_01030 0.20 -2.2
1,084,537 - MPMX20_01030 0.22 -2.5
1,084,641 + MPMX20_01030 0.26 -3.2
1,084,760 - MPMX20_01030 0.31 -2.5

Or see this region's nucleotide sequence