Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00975 and MPMX20_00976 are separated by 16 nucleotides MPMX20_00976 and MPMX20_00977 are separated by 97 nucleotides MPMX20_00977 and MPMX20_00978 are separated by 144 nucleotides
MPMX20_00975: MPMX20_00975 - putative diguanylate cyclase DgcC, at 1,026,918 to 1,028,021
_00975
MPMX20_00976: MPMX20_00976 - Pyrroline-5-carboxylate reductase, at 1,028,038 to 1,028,847
_00976
MPMX20_00977: MPMX20_00977 - hypothetical protein, at 1,028,945 to 1,029,403
_00977
MPMX20_00978: MPMX20_00978 - Shikimate kinase 2, at 1,029,548 to 1,030,072
_00978
Position (kb)
1028
1029 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1027.075 kb on + strand, within MPMX20_00975 at 1027.080 kb on - strand, within MPMX20_00975 at 1027.130 kb on - strand, within MPMX20_00975 at 1027.174 kb on - strand, within MPMX20_00975 at 1027.254 kb on - strand, within MPMX20_00975 at 1027.255 kb on + strand, within MPMX20_00975 at 1027.255 kb on + strand, within MPMX20_00975 at 1027.268 kb on + strand, within MPMX20_00975 at 1027.268 kb on + strand, within MPMX20_00975 at 1027.268 kb on + strand, within MPMX20_00975 at 1027.268 kb on + strand, within MPMX20_00975 at 1027.268 kb on + strand, within MPMX20_00975 at 1027.268 kb on + strand, within MPMX20_00975 at 1027.276 kb on - strand, within MPMX20_00975 at 1027.276 kb on - strand, within MPMX20_00975 at 1027.276 kb on - strand, within MPMX20_00975 at 1027.276 kb on - strand, within MPMX20_00975 at 1027.276 kb on - strand, within MPMX20_00975 at 1027.276 kb on - strand, within MPMX20_00975 at 1027.281 kb on - strand, within MPMX20_00975 at 1027.283 kb on + strand, within MPMX20_00975 at 1027.283 kb on + strand, within MPMX20_00975 at 1027.347 kb on + strand, within MPMX20_00975 at 1027.348 kb on + strand, within MPMX20_00975 at 1027.355 kb on - strand, within MPMX20_00975 at 1027.356 kb on - strand, within MPMX20_00975 at 1027.387 kb on - strand, within MPMX20_00975 at 1027.499 kb on - strand, within MPMX20_00975 at 1027.501 kb on - strand, within MPMX20_00975 at 1027.537 kb on - strand, within MPMX20_00975 at 1027.605 kb on - strand, within MPMX20_00975 at 1027.676 kb on + strand, within MPMX20_00975 at 1027.684 kb on - strand, within MPMX20_00975 at 1027.845 kb on + strand, within MPMX20_00975 at 1027.981 kb on - strand at 1028.015 kb on + strand at 1028.161 kb on + strand, within MPMX20_00976 at 1028.169 kb on - strand, within MPMX20_00976 at 1028.187 kb on + strand, within MPMX20_00976 at 1028.188 kb on - strand, within MPMX20_00976 at 1028.263 kb on - strand, within MPMX20_00976 at 1028.463 kb on - strand, within MPMX20_00976 at 1028.465 kb on + strand, within MPMX20_00976 at 1028.485 kb on + strand, within MPMX20_00976 at 1028.504 kb on + strand, within MPMX20_00976 at 1028.589 kb on + strand, within MPMX20_00976 at 1028.589 kb on + strand, within MPMX20_00976 at 1028.597 kb on - strand, within MPMX20_00976 at 1028.808 kb on - strand at 1028.936 kb on - strand at 1028.969 kb on - strand at 1029.035 kb on - strand, within MPMX20_00977 at 1029.101 kb on + strand, within MPMX20_00977 at 1029.102 kb on + strand, within MPMX20_00977 at 1029.110 kb on - strand, within MPMX20_00977 at 1029.110 kb on - strand, within MPMX20_00977 at 1029.110 kb on - strand, within MPMX20_00977 at 1029.110 kb on - strand, within MPMX20_00977 at 1029.110 kb on - strand, within MPMX20_00977 at 1029.136 kb on + strand, within MPMX20_00977 at 1029.141 kb on + strand, within MPMX20_00977 at 1029.141 kb on + strand, within MPMX20_00977 at 1029.144 kb on - strand, within MPMX20_00977 at 1029.144 kb on - strand, within MPMX20_00977 at 1029.149 kb on - strand, within MPMX20_00977 at 1029.149 kb on - strand, within MPMX20_00977 at 1029.149 kb on - strand, within MPMX20_00977 at 1029.188 kb on - strand, within MPMX20_00977 at 1029.216 kb on + strand, within MPMX20_00977 at 1029.227 kb on - strand, within MPMX20_00977 at 1029.260 kb on + strand, within MPMX20_00977 at 1029.324 kb on + strand, within MPMX20_00977 at 1029.324 kb on + strand, within MPMX20_00977 at 1029.328 kb on + strand, within MPMX20_00977 at 1029.398 kb on + strand at 1029.406 kb on - strand at 1029.438 kb on - strand at 1029.438 kb on - strand at 1029.440 kb on + strand at 1029.448 kb on - strand at 1029.519 kb on - strand at 1029.519 kb on - strand at 1029.611 kb on - strand, within MPMX20_00978 at 1029.704 kb on + strand, within MPMX20_00978 at 1029.801 kb on + strand, within MPMX20_00978 at 1029.802 kb on + strand, within MPMX20_00978 at 1029.804 kb on - strand, within MPMX20_00978 at 1029.844 kb on + strand, within MPMX20_00978
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 1,027,075 + MPMX20_00975 0.14 +0.2 1,027,080 - MPMX20_00975 0.15 +0.8 1,027,130 - MPMX20_00975 0.19 -1.2 1,027,174 - MPMX20_00975 0.23 +0.5 1,027,254 - MPMX20_00975 0.30 +0.5 1,027,255 + MPMX20_00975 0.31 -1.1 1,027,255 + MPMX20_00975 0.31 +1.3 1,027,268 + MPMX20_00975 0.32 +0.6 1,027,268 + MPMX20_00975 0.32 -0.8 1,027,268 + MPMX20_00975 0.32 +0.4 1,027,268 + MPMX20_00975 0.32 -0.7 1,027,268 + MPMX20_00975 0.32 +1.6 1,027,268 + MPMX20_00975 0.32 -0.7 1,027,276 - MPMX20_00975 0.32 +0.7 1,027,276 - MPMX20_00975 0.32 -0.4 1,027,276 - MPMX20_00975 0.32 -2.6 1,027,276 - MPMX20_00975 0.32 -0.1 1,027,276 - MPMX20_00975 0.32 -0.7 1,027,276 - MPMX20_00975 0.32 +0.3 1,027,281 - MPMX20_00975 0.33 +0.3 1,027,283 + MPMX20_00975 0.33 -0.3 1,027,283 + MPMX20_00975 0.33 +0.8 1,027,347 + MPMX20_00975 0.39 -0.3 1,027,348 + MPMX20_00975 0.39 +0.6 1,027,355 - MPMX20_00975 0.40 -0.5 1,027,356 - MPMX20_00975 0.40 -0.5 1,027,387 - MPMX20_00975 0.42 +0.9 1,027,499 - MPMX20_00975 0.53 +0.3 1,027,501 - MPMX20_00975 0.53 -2.5 1,027,537 - MPMX20_00975 0.56 -0.7 1,027,605 - MPMX20_00975 0.62 -1.2 1,027,676 + MPMX20_00975 0.69 +0.8 1,027,684 - MPMX20_00975 0.69 +0.0 1,027,845 + MPMX20_00975 0.84 -0.5 1,027,981 - +0.4 1,028,015 + -0.7 1,028,161 + MPMX20_00976 0.15 -0.4 1,028,169 - MPMX20_00976 0.16 -0.4 1,028,187 + MPMX20_00976 0.18 -3.7 1,028,188 - MPMX20_00976 0.19 -4.0 1,028,263 - MPMX20_00976 0.28 -2.5 1,028,463 - MPMX20_00976 0.52 -3.5 1,028,465 + MPMX20_00976 0.53 -1.2 1,028,485 + MPMX20_00976 0.55 -1.7 1,028,504 + MPMX20_00976 0.58 -4.8 1,028,589 + MPMX20_00976 0.68 -4.1 1,028,589 + MPMX20_00976 0.68 +0.6 1,028,597 - MPMX20_00976 0.69 -0.7 1,028,808 - -3.0 1,028,936 - +0.6 1,028,969 - -1.3 1,029,035 - MPMX20_00977 0.20 +1.1 1,029,101 + MPMX20_00977 0.34 +0.0 1,029,102 + MPMX20_00977 0.34 -0.3 1,029,110 - MPMX20_00977 0.36 -0.6 1,029,110 - MPMX20_00977 0.36 +0.4 1,029,110 - MPMX20_00977 0.36 +1.2 1,029,110 - MPMX20_00977 0.36 -0.2 1,029,110 - MPMX20_00977 0.36 -1.6 1,029,136 + MPMX20_00977 0.42 -0.6 1,029,141 + MPMX20_00977 0.43 -0.1 1,029,141 + MPMX20_00977 0.43 +2.0 1,029,144 - MPMX20_00977 0.43 +0.5 1,029,144 - MPMX20_00977 0.43 +0.3 1,029,149 - MPMX20_00977 0.44 +0.6 1,029,149 - MPMX20_00977 0.44 +1.2 1,029,149 - MPMX20_00977 0.44 -0.4 1,029,188 - MPMX20_00977 0.53 +0.9 1,029,216 + MPMX20_00977 0.59 -2.4 1,029,227 - MPMX20_00977 0.61 +1.5 1,029,260 + MPMX20_00977 0.69 -1.3 1,029,324 + MPMX20_00977 0.83 +0.1 1,029,324 + MPMX20_00977 0.83 +0.4 1,029,328 + MPMX20_00977 0.83 -0.1 1,029,398 + -2.5 1,029,406 - +0.2 1,029,438 - +0.3 1,029,438 - +0.9 1,029,440 + -2.2 1,029,448 - -2.5 1,029,519 - -0.2 1,029,519 - -0.4 1,029,611 - MPMX20_00978 0.12 -0.7 1,029,704 + MPMX20_00978 0.30 -0.4 1,029,801 + MPMX20_00978 0.48 +0.3 1,029,802 + MPMX20_00978 0.48 -0.2 1,029,804 - MPMX20_00978 0.49 +0.3 1,029,844 + MPMX20_00978 0.56 +0.7
Or see this region's nucleotide sequence