Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00976

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00975 and MPMX20_00976 are separated by 16 nucleotidesMPMX20_00976 and MPMX20_00977 are separated by 97 nucleotidesMPMX20_00977 and MPMX20_00978 are separated by 144 nucleotides MPMX20_00975: MPMX20_00975 - putative diguanylate cyclase DgcC, at 1,026,918 to 1,028,021 _00975 MPMX20_00976: MPMX20_00976 - Pyrroline-5-carboxylate reductase, at 1,028,038 to 1,028,847 _00976 MPMX20_00977: MPMX20_00977 - hypothetical protein, at 1,028,945 to 1,029,403 _00977 MPMX20_00978: MPMX20_00978 - Shikimate kinase 2, at 1,029,548 to 1,030,072 _00978 Position (kb) 1028 1029Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1027.075 kb on + strand, within MPMX20_00975at 1027.080 kb on - strand, within MPMX20_00975at 1027.130 kb on - strand, within MPMX20_00975at 1027.174 kb on - strand, within MPMX20_00975at 1027.254 kb on - strand, within MPMX20_00975at 1027.255 kb on + strand, within MPMX20_00975at 1027.255 kb on + strand, within MPMX20_00975at 1027.268 kb on + strand, within MPMX20_00975at 1027.268 kb on + strand, within MPMX20_00975at 1027.268 kb on + strand, within MPMX20_00975at 1027.268 kb on + strand, within MPMX20_00975at 1027.268 kb on + strand, within MPMX20_00975at 1027.268 kb on + strand, within MPMX20_00975at 1027.276 kb on - strand, within MPMX20_00975at 1027.276 kb on - strand, within MPMX20_00975at 1027.276 kb on - strand, within MPMX20_00975at 1027.276 kb on - strand, within MPMX20_00975at 1027.276 kb on - strand, within MPMX20_00975at 1027.276 kb on - strand, within MPMX20_00975at 1027.281 kb on - strand, within MPMX20_00975at 1027.283 kb on + strand, within MPMX20_00975at 1027.283 kb on + strand, within MPMX20_00975at 1027.347 kb on + strand, within MPMX20_00975at 1027.348 kb on + strand, within MPMX20_00975at 1027.355 kb on - strand, within MPMX20_00975at 1027.356 kb on - strand, within MPMX20_00975at 1027.387 kb on - strand, within MPMX20_00975at 1027.499 kb on - strand, within MPMX20_00975at 1027.501 kb on - strand, within MPMX20_00975at 1027.537 kb on - strand, within MPMX20_00975at 1027.605 kb on - strand, within MPMX20_00975at 1027.676 kb on + strand, within MPMX20_00975at 1027.684 kb on - strand, within MPMX20_00975at 1027.845 kb on + strand, within MPMX20_00975at 1027.981 kb on - strandat 1028.015 kb on + strandat 1028.161 kb on + strand, within MPMX20_00976at 1028.169 kb on - strand, within MPMX20_00976at 1028.187 kb on + strand, within MPMX20_00976at 1028.188 kb on - strand, within MPMX20_00976at 1028.263 kb on - strand, within MPMX20_00976at 1028.463 kb on - strand, within MPMX20_00976at 1028.465 kb on + strand, within MPMX20_00976at 1028.485 kb on + strand, within MPMX20_00976at 1028.504 kb on + strand, within MPMX20_00976at 1028.589 kb on + strand, within MPMX20_00976at 1028.589 kb on + strand, within MPMX20_00976at 1028.597 kb on - strand, within MPMX20_00976at 1028.808 kb on - strandat 1028.936 kb on - strandat 1028.969 kb on - strandat 1029.035 kb on - strand, within MPMX20_00977at 1029.101 kb on + strand, within MPMX20_00977at 1029.102 kb on + strand, within MPMX20_00977at 1029.110 kb on - strand, within MPMX20_00977at 1029.110 kb on - strand, within MPMX20_00977at 1029.110 kb on - strand, within MPMX20_00977at 1029.110 kb on - strand, within MPMX20_00977at 1029.110 kb on - strand, within MPMX20_00977at 1029.136 kb on + strand, within MPMX20_00977at 1029.141 kb on + strand, within MPMX20_00977at 1029.141 kb on + strand, within MPMX20_00977at 1029.144 kb on - strand, within MPMX20_00977at 1029.144 kb on - strand, within MPMX20_00977at 1029.149 kb on - strand, within MPMX20_00977at 1029.149 kb on - strand, within MPMX20_00977at 1029.149 kb on - strand, within MPMX20_00977at 1029.188 kb on - strand, within MPMX20_00977at 1029.216 kb on + strand, within MPMX20_00977at 1029.227 kb on - strand, within MPMX20_00977at 1029.260 kb on + strand, within MPMX20_00977at 1029.324 kb on + strand, within MPMX20_00977at 1029.324 kb on + strand, within MPMX20_00977at 1029.328 kb on + strand, within MPMX20_00977at 1029.398 kb on + strandat 1029.406 kb on - strandat 1029.438 kb on - strandat 1029.438 kb on - strandat 1029.440 kb on + strandat 1029.448 kb on - strandat 1029.519 kb on - strandat 1029.519 kb on - strandat 1029.611 kb on - strand, within MPMX20_00978at 1029.704 kb on + strand, within MPMX20_00978at 1029.801 kb on + strand, within MPMX20_00978at 1029.802 kb on + strand, within MPMX20_00978at 1029.804 kb on - strand, within MPMX20_00978at 1029.844 kb on + strand, within MPMX20_00978

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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1,027,075 + MPMX20_00975 0.14 +0.2
1,027,080 - MPMX20_00975 0.15 +0.8
1,027,130 - MPMX20_00975 0.19 -1.2
1,027,174 - MPMX20_00975 0.23 +0.5
1,027,254 - MPMX20_00975 0.30 +0.5
1,027,255 + MPMX20_00975 0.31 -1.1
1,027,255 + MPMX20_00975 0.31 +1.3
1,027,268 + MPMX20_00975 0.32 +0.6
1,027,268 + MPMX20_00975 0.32 -0.8
1,027,268 + MPMX20_00975 0.32 +0.4
1,027,268 + MPMX20_00975 0.32 -0.7
1,027,268 + MPMX20_00975 0.32 +1.6
1,027,268 + MPMX20_00975 0.32 -0.7
1,027,276 - MPMX20_00975 0.32 +0.7
1,027,276 - MPMX20_00975 0.32 -0.4
1,027,276 - MPMX20_00975 0.32 -2.6
1,027,276 - MPMX20_00975 0.32 -0.1
1,027,276 - MPMX20_00975 0.32 -0.7
1,027,276 - MPMX20_00975 0.32 +0.3
1,027,281 - MPMX20_00975 0.33 +0.3
1,027,283 + MPMX20_00975 0.33 -0.3
1,027,283 + MPMX20_00975 0.33 +0.8
1,027,347 + MPMX20_00975 0.39 -0.3
1,027,348 + MPMX20_00975 0.39 +0.6
1,027,355 - MPMX20_00975 0.40 -0.5
1,027,356 - MPMX20_00975 0.40 -0.5
1,027,387 - MPMX20_00975 0.42 +0.9
1,027,499 - MPMX20_00975 0.53 +0.3
1,027,501 - MPMX20_00975 0.53 -2.5
1,027,537 - MPMX20_00975 0.56 -0.7
1,027,605 - MPMX20_00975 0.62 -1.2
1,027,676 + MPMX20_00975 0.69 +0.8
1,027,684 - MPMX20_00975 0.69 +0.0
1,027,845 + MPMX20_00975 0.84 -0.5
1,027,981 - +0.4
1,028,015 + -0.7
1,028,161 + MPMX20_00976 0.15 -0.4
1,028,169 - MPMX20_00976 0.16 -0.4
1,028,187 + MPMX20_00976 0.18 -3.7
1,028,188 - MPMX20_00976 0.19 -4.0
1,028,263 - MPMX20_00976 0.28 -2.5
1,028,463 - MPMX20_00976 0.52 -3.5
1,028,465 + MPMX20_00976 0.53 -1.2
1,028,485 + MPMX20_00976 0.55 -1.7
1,028,504 + MPMX20_00976 0.58 -4.8
1,028,589 + MPMX20_00976 0.68 -4.1
1,028,589 + MPMX20_00976 0.68 +0.6
1,028,597 - MPMX20_00976 0.69 -0.7
1,028,808 - -3.0
1,028,936 - +0.6
1,028,969 - -1.3
1,029,035 - MPMX20_00977 0.20 +1.1
1,029,101 + MPMX20_00977 0.34 +0.0
1,029,102 + MPMX20_00977 0.34 -0.3
1,029,110 - MPMX20_00977 0.36 -0.6
1,029,110 - MPMX20_00977 0.36 +0.4
1,029,110 - MPMX20_00977 0.36 +1.2
1,029,110 - MPMX20_00977 0.36 -0.2
1,029,110 - MPMX20_00977 0.36 -1.6
1,029,136 + MPMX20_00977 0.42 -0.6
1,029,141 + MPMX20_00977 0.43 -0.1
1,029,141 + MPMX20_00977 0.43 +2.0
1,029,144 - MPMX20_00977 0.43 +0.5
1,029,144 - MPMX20_00977 0.43 +0.3
1,029,149 - MPMX20_00977 0.44 +0.6
1,029,149 - MPMX20_00977 0.44 +1.2
1,029,149 - MPMX20_00977 0.44 -0.4
1,029,188 - MPMX20_00977 0.53 +0.9
1,029,216 + MPMX20_00977 0.59 -2.4
1,029,227 - MPMX20_00977 0.61 +1.5
1,029,260 + MPMX20_00977 0.69 -1.3
1,029,324 + MPMX20_00977 0.83 +0.1
1,029,324 + MPMX20_00977 0.83 +0.4
1,029,328 + MPMX20_00977 0.83 -0.1
1,029,398 + -2.5
1,029,406 - +0.2
1,029,438 - +0.3
1,029,438 - +0.9
1,029,440 + -2.2
1,029,448 - -2.5
1,029,519 - -0.2
1,029,519 - -0.4
1,029,611 - MPMX20_00978 0.12 -0.7
1,029,704 + MPMX20_00978 0.30 -0.4
1,029,801 + MPMX20_00978 0.48 +0.3
1,029,802 + MPMX20_00978 0.48 -0.2
1,029,804 - MPMX20_00978 0.49 +0.3
1,029,844 + MPMX20_00978 0.56 +0.7

Or see this region's nucleotide sequence