Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00556

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00554 and MPMX20_00555 are separated by 4 nucleotidesMPMX20_00555 and MPMX20_00556 are separated by 133 nucleotidesMPMX20_00556 and MPMX20_00557 are separated by 164 nucleotidesMPMX20_00557 and MPMX20_00558 are separated by 46 nucleotides MPMX20_00554: MPMX20_00554 - Beta-xylosidase, at 579,071 to 580,690 _00554 MPMX20_00555: MPMX20_00555 - HTH-type transcriptional regulator XynR, at 580,695 to 581,453 _00555 MPMX20_00556: MPMX20_00556 - Ornithine carbamoyltransferase subunit F, at 581,587 to 582,591 _00556 MPMX20_00557: MPMX20_00557 - Regulator of ribonuclease activity B, at 582,756 to 583,181 _00557 MPMX20_00558: MPMX20_00558 - hypothetical protein, at 583,228 to 583,986 _00558 Position (kb) 581 582 583Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 580.618 kb on - strandat 580.702 kb on + strandat 580.710 kb on - strandat 580.857 kb on + strand, within MPMX20_00555at 580.891 kb on + strand, within MPMX20_00555at 580.891 kb on + strand, within MPMX20_00555at 580.899 kb on - strand, within MPMX20_00555at 580.899 kb on - strand, within MPMX20_00555at 580.899 kb on - strand, within MPMX20_00555at 580.899 kb on - strand, within MPMX20_00555at 580.899 kb on - strand, within MPMX20_00555at 580.899 kb on - strand, within MPMX20_00555at 580.899 kb on - strand, within MPMX20_00555at 580.899 kb on - strand, within MPMX20_00555at 580.913 kb on + strand, within MPMX20_00555at 580.921 kb on - strand, within MPMX20_00555at 580.958 kb on + strand, within MPMX20_00555at 580.958 kb on + strand, within MPMX20_00555at 580.958 kb on + strand, within MPMX20_00555at 580.958 kb on + strand, within MPMX20_00555at 580.958 kb on + strand, within MPMX20_00555at 580.958 kb on - strand, within MPMX20_00555at 580.959 kb on + strand, within MPMX20_00555at 580.966 kb on - strand, within MPMX20_00555at 580.966 kb on - strand, within MPMX20_00555at 580.966 kb on - strand, within MPMX20_00555at 580.966 kb on - strand, within MPMX20_00555at 580.966 kb on - strand, within MPMX20_00555at 580.967 kb on - strand, within MPMX20_00555at 580.981 kb on + strand, within MPMX20_00555at 580.981 kb on + strand, within MPMX20_00555at 580.981 kb on + strand, within MPMX20_00555at 580.989 kb on - strand, within MPMX20_00555at 580.989 kb on - strand, within MPMX20_00555at 581.061 kb on + strand, within MPMX20_00555at 581.101 kb on + strand, within MPMX20_00555at 581.157 kb on + strand, within MPMX20_00555at 581.162 kb on + strand, within MPMX20_00555at 581.162 kb on + strand, within MPMX20_00555at 581.170 kb on - strand, within MPMX20_00555at 581.170 kb on - strand, within MPMX20_00555at 581.193 kb on + strand, within MPMX20_00555at 581.201 kb on - strand, within MPMX20_00555at 581.202 kb on - strand, within MPMX20_00555at 581.228 kb on + strand, within MPMX20_00555at 581.252 kb on + strand, within MPMX20_00555at 581.302 kb on + strand, within MPMX20_00555at 581.325 kb on - strand, within MPMX20_00555at 581.325 kb on - strand, within MPMX20_00555at 581.325 kb on - strand, within MPMX20_00555at 581.360 kb on - strand, within MPMX20_00555at 581.360 kb on - strand, within MPMX20_00555at 581.537 kb on - strandat 581.550 kb on + strandat 581.550 kb on + strandat 581.565 kb on - strandat 581.577 kb on - strandat 581.577 kb on - strandat 581.584 kb on + strandat 581.730 kb on + strand, within MPMX20_00556at 581.737 kb on - strand, within MPMX20_00556at 581.747 kb on - strand, within MPMX20_00556at 581.773 kb on + strand, within MPMX20_00556at 581.801 kb on - strand, within MPMX20_00556at 581.826 kb on + strand, within MPMX20_00556at 581.826 kb on + strand, within MPMX20_00556at 581.826 kb on + strand, within MPMX20_00556at 581.826 kb on + strand, within MPMX20_00556at 581.827 kb on - strand, within MPMX20_00556at 581.834 kb on - strand, within MPMX20_00556at 581.858 kb on + strand, within MPMX20_00556at 581.873 kb on + strand, within MPMX20_00556at 581.895 kb on + strand, within MPMX20_00556at 581.903 kb on - strand, within MPMX20_00556at 581.981 kb on + strand, within MPMX20_00556at 582.050 kb on - strand, within MPMX20_00556at 582.052 kb on + strand, within MPMX20_00556at 582.205 kb on - strand, within MPMX20_00556at 582.227 kb on + strand, within MPMX20_00556at 582.227 kb on + strand, within MPMX20_00556at 582.233 kb on - strand, within MPMX20_00556at 582.235 kb on - strand, within MPMX20_00556at 582.255 kb on + strand, within MPMX20_00556at 582.263 kb on - strand, within MPMX20_00556at 582.263 kb on - strand, within MPMX20_00556at 582.287 kb on + strand, within MPMX20_00556at 582.382 kb on - strand, within MPMX20_00556at 582.392 kb on - strand, within MPMX20_00556at 582.407 kb on - strand, within MPMX20_00556at 582.497 kb on + strandat 582.505 kb on - strandat 582.527 kb on + strandat 582.527 kb on + strandat 582.540 kb on - strandat 582.576 kb on - strandat 582.690 kb on + strandat 582.690 kb on + strandat 582.698 kb on - strandat 582.698 kb on - strandat 582.703 kb on - strandat 582.737 kb on + strandat 582.745 kb on - strandat 582.746 kb on + strandat 582.773 kb on + strandat 582.835 kb on + strand, within MPMX20_00557at 582.835 kb on - strand, within MPMX20_00557at 582.848 kb on + strand, within MPMX20_00557at 582.848 kb on + strand, within MPMX20_00557at 582.848 kb on + strand, within MPMX20_00557at 582.848 kb on + strand, within MPMX20_00557at 582.853 kb on - strand, within MPMX20_00557at 582.854 kb on - strand, within MPMX20_00557at 582.856 kb on - strand, within MPMX20_00557at 582.863 kb on + strand, within MPMX20_00557at 582.923 kb on + strand, within MPMX20_00557at 582.933 kb on - strand, within MPMX20_00557at 582.948 kb on - strand, within MPMX20_00557at 582.957 kb on - strand, within MPMX20_00557at 583.012 kb on + strand, within MPMX20_00557at 583.012 kb on + strand, within MPMX20_00557at 583.020 kb on - strand, within MPMX20_00557at 583.104 kb on + strand, within MPMX20_00557at 583.104 kb on + strand, within MPMX20_00557at 583.112 kb on + strand, within MPMX20_00557at 583.263 kb on - strandat 583.297 kb on + strandat 583.305 kb on - strand, within MPMX20_00558at 583.305 kb on - strand, within MPMX20_00558at 583.356 kb on + strand, within MPMX20_00558at 583.364 kb on - strand, within MPMX20_00558at 583.365 kb on - strand, within MPMX20_00558at 583.437 kb on + strand, within MPMX20_00558at 583.444 kb on - strand, within MPMX20_00558at 583.461 kb on - strand, within MPMX20_00558at 583.565 kb on + strand, within MPMX20_00558at 583.578 kb on - strand, within MPMX20_00558

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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580,618 - +0.0
580,702 + -0.4
580,710 - -0.1
580,857 + MPMX20_00555 0.21 -0.1
580,891 + MPMX20_00555 0.26 +1.7
580,891 + MPMX20_00555 0.26 -0.3
580,899 - MPMX20_00555 0.27 +0.5
580,899 - MPMX20_00555 0.27 -0.0
580,899 - MPMX20_00555 0.27 +0.1
580,899 - MPMX20_00555 0.27 +0.0
580,899 - MPMX20_00555 0.27 -0.8
580,899 - MPMX20_00555 0.27 +0.7
580,899 - MPMX20_00555 0.27 -0.1
580,899 - MPMX20_00555 0.27 -0.4
580,913 + MPMX20_00555 0.29 +0.4
580,921 - MPMX20_00555 0.30 +0.9
580,958 + MPMX20_00555 0.35 -0.4
580,958 + MPMX20_00555 0.35 +0.4
580,958 + MPMX20_00555 0.35 +0.4
580,958 + MPMX20_00555 0.35 +2.1
580,958 + MPMX20_00555 0.35 +0.1
580,958 - MPMX20_00555 0.35 -0.8
580,959 + MPMX20_00555 0.35 +0.5
580,966 - MPMX20_00555 0.36 +0.5
580,966 - MPMX20_00555 0.36 -0.3
580,966 - MPMX20_00555 0.36 -1.1
580,966 - MPMX20_00555 0.36 -0.9
580,966 - MPMX20_00555 0.36 -1.2
580,967 - MPMX20_00555 0.36 +0.5
580,981 + MPMX20_00555 0.38 +0.1
580,981 + MPMX20_00555 0.38 -0.3
580,981 + MPMX20_00555 0.38 +0.0
580,989 - MPMX20_00555 0.39 +1.4
580,989 - MPMX20_00555 0.39 +2.2
581,061 + MPMX20_00555 0.48 +0.0
581,101 + MPMX20_00555 0.53 -0.5
581,157 + MPMX20_00555 0.61 +1.0
581,162 + MPMX20_00555 0.62 -1.1
581,162 + MPMX20_00555 0.62 -0.0
581,170 - MPMX20_00555 0.63 +0.4
581,170 - MPMX20_00555 0.63 -0.1
581,193 + MPMX20_00555 0.66 -0.5
581,201 - MPMX20_00555 0.67 -0.2
581,202 - MPMX20_00555 0.67 +0.9
581,228 + MPMX20_00555 0.70 -1.7
581,252 + MPMX20_00555 0.73 +0.5
581,302 + MPMX20_00555 0.80 -0.2
581,325 - MPMX20_00555 0.83 -0.2
581,325 - MPMX20_00555 0.83 -0.0
581,325 - MPMX20_00555 0.83 +0.2
581,360 - MPMX20_00555 0.88 +0.3
581,360 - MPMX20_00555 0.88 +0.2
581,537 - +2.0
581,550 + -0.5
581,550 + +0.1
581,565 - -0.7
581,577 - -1.5
581,577 - -0.5
581,584 + +0.3
581,730 + MPMX20_00556 0.14 -4.2
581,737 - MPMX20_00556 0.15 +0.3
581,747 - MPMX20_00556 0.16 -3.1
581,773 + MPMX20_00556 0.19 -4.5
581,801 - MPMX20_00556 0.21 -2.4
581,826 + MPMX20_00556 0.24 -4.3
581,826 + MPMX20_00556 0.24 -2.3
581,826 + MPMX20_00556 0.24 -1.4
581,826 + MPMX20_00556 0.24 -2.0
581,827 - MPMX20_00556 0.24 -3.8
581,834 - MPMX20_00556 0.25 -1.9
581,858 + MPMX20_00556 0.27 -2.9
581,873 + MPMX20_00556 0.28 -3.6
581,895 + MPMX20_00556 0.31 -2.6
581,903 - MPMX20_00556 0.31 -2.1
581,981 + MPMX20_00556 0.39 -4.0
582,050 - MPMX20_00556 0.46 -3.7
582,052 + MPMX20_00556 0.46 -4.4
582,205 - MPMX20_00556 0.61 -4.3
582,227 + MPMX20_00556 0.64 -4.4
582,227 + MPMX20_00556 0.64 -2.5
582,233 - MPMX20_00556 0.64 -2.8
582,235 - MPMX20_00556 0.64 -2.3
582,255 + MPMX20_00556 0.66 -2.8
582,263 - MPMX20_00556 0.67 -3.9
582,263 - MPMX20_00556 0.67 -4.0
582,287 + MPMX20_00556 0.70 -2.9
582,382 - MPMX20_00556 0.79 -2.2
582,392 - MPMX20_00556 0.80 -3.3
582,407 - MPMX20_00556 0.82 -3.1
582,497 + -3.0
582,505 - -3.3
582,527 + -3.6
582,527 + -3.7
582,540 - -1.3
582,576 - -0.5
582,690 + +3.8
582,690 + -0.6
582,698 - -1.1
582,698 - -0.1
582,703 - +0.0
582,737 + -2.5
582,745 - +0.2
582,746 + -0.5
582,773 + -0.3
582,835 + MPMX20_00557 0.19 -0.5
582,835 - MPMX20_00557 0.19 +0.7
582,848 + MPMX20_00557 0.22 +0.6
582,848 + MPMX20_00557 0.22 -0.3
582,848 + MPMX20_00557 0.22 -0.5
582,848 + MPMX20_00557 0.22 +0.8
582,853 - MPMX20_00557 0.23 -2.7
582,854 - MPMX20_00557 0.23 -0.5
582,856 - MPMX20_00557 0.23 -0.3
582,863 + MPMX20_00557 0.25 +1.3
582,923 + MPMX20_00557 0.39 +1.3
582,933 - MPMX20_00557 0.42 -0.9
582,948 - MPMX20_00557 0.45 -0.8
582,957 - MPMX20_00557 0.47 -0.0
583,012 + MPMX20_00557 0.60 -0.3
583,012 + MPMX20_00557 0.60 +0.3
583,020 - MPMX20_00557 0.62 -1.5
583,104 + MPMX20_00557 0.82 -1.1
583,104 + MPMX20_00557 0.82 +0.4
583,112 + MPMX20_00557 0.84 +0.0
583,263 - +0.6
583,297 + -0.4
583,305 - MPMX20_00558 0.10 +0.3
583,305 - MPMX20_00558 0.10 -0.4
583,356 + MPMX20_00558 0.17 -0.5
583,364 - MPMX20_00558 0.18 +0.3
583,365 - MPMX20_00558 0.18 -0.0
583,437 + MPMX20_00558 0.28 +0.8
583,444 - MPMX20_00558 0.28 -0.4
583,461 - MPMX20_00558 0.31 +0.1
583,565 + MPMX20_00558 0.44 +0.6
583,578 - MPMX20_00558 0.46 +0.7

Or see this region's nucleotide sequence