Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00086 and MPMX20_00087 are separated by 19 nucleotides MPMX20_00087 and MPMX20_00088 are separated by 54 nucleotides MPMX20_00088 and MPMX20_00089 are separated by 251 nucleotides
MPMX20_00086: MPMX20_00086 - Bifunctional (p)ppGpp synthase/hydrolase SpoT, at 88,736 to 90,850
_00086
MPMX20_00087: MPMX20_00087 - DNA-directed RNA polymerase subunit omega, at 90,870 to 91,145
_00087
MPMX20_00088: MPMX20_00088 - Guanylate kinase, at 91,200 to 91,823
_00088
MPMX20_00089: MPMX20_00089 - DNA ligase B, at 92,075 to 93,745
_00089
Position (kb)
90
91
92 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 90.887 kb on - strand at 90.887 kb on - strand at 90.977 kb on - strand, within MPMX20_00087 at 91.056 kb on + strand, within MPMX20_00087 at 91.059 kb on - strand, within MPMX20_00087 at 91.064 kb on - strand, within MPMX20_00087 at 91.064 kb on - strand, within MPMX20_00087 at 91.099 kb on - strand, within MPMX20_00087 at 91.099 kb on - strand, within MPMX20_00087 at 91.122 kb on + strand at 91.122 kb on + strand at 91.122 kb on + strand at 91.130 kb on - strand at 91.130 kb on - strand at 91.186 kb on + strand at 91.892 kb on + strand at 91.892 kb on + strand at 91.892 kb on + strand at 91.900 kb on - strand at 91.900 kb on - strand at 91.900 kb on - strand at 91.900 kb on - strand at 91.901 kb on - strand at 91.968 kb on - strand at 92.011 kb on - strand at 92.011 kb on - strand at 92.011 kb on - strand at 92.013 kb on - strand at 92.039 kb on + strand at 92.039 kb on + strand at 92.040 kb on + strand at 92.040 kb on + strand at 92.047 kb on - strand at 92.047 kb on - strand at 92.047 kb on - strand at 92.048 kb on - strand at 92.048 kb on - strand at 92.048 kb on - strand at 92.048 kb on - strand at 92.072 kb on + strand at 92.094 kb on + strand at 92.094 kb on + strand at 92.094 kb on + strand at 92.102 kb on - strand at 92.102 kb on - strand at 92.102 kb on - strand at 92.102 kb on - strand at 92.112 kb on - strand at 92.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 90,887 - -0.8 90,887 - -2.3 90,977 - MPMX20_00087 0.39 -0.7 91,056 + MPMX20_00087 0.67 -2.1 91,059 - MPMX20_00087 0.68 -1.7 91,064 - MPMX20_00087 0.70 -2.1 91,064 - MPMX20_00087 0.70 -2.0 91,099 - MPMX20_00087 0.83 +1.0 91,099 - MPMX20_00087 0.83 +0.2 91,122 + -3.4 91,122 + -1.6 91,122 + -1.1 91,130 - -1.0 91,130 - -0.8 91,186 + +0.5 91,892 + -1.5 91,892 + -0.4 91,892 + +0.1 91,900 - +1.2 91,900 - +0.8 91,900 - +1.2 91,900 - -0.0 91,901 - -1.6 91,968 - +0.5 92,011 - +0.1 92,011 - -0.6 92,011 - +0.4 92,013 - -0.5 92,039 + +2.0 92,039 + -0.2 92,040 + +0.4 92,040 + +0.3 92,047 - -0.0 92,047 - +0.2 92,047 - -0.6 92,048 - -0.5 92,048 - -0.8 92,048 - +1.0 92,048 - -0.1 92,072 + +0.4 92,094 + +0.0 92,094 + +0.1 92,094 + +0.5 92,102 - +0.6 92,102 - +0.4 92,102 - -1.6 92,102 - -0.1 92,112 - -0.4 92,129 - -0.8
Or see this region's nucleotide sequence