Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03387

Experiment: Thymine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03384 and MPMX20_03385 are separated by 0 nucleotidesMPMX20_03385 and MPMX20_03386 overlap by 4 nucleotidesMPMX20_03386 and MPMX20_03387 are separated by 52 nucleotidesMPMX20_03387 and MPMX20_03388 are separated by 65 nucleotides MPMX20_03384: MPMX20_03384 - Protease PrtS, at 3,564,295 to 3,565,314 _03384 MPMX20_03385: MPMX20_03385 - hypothetical protein, at 3,565,315 to 3,565,665 _03385 MPMX20_03386: MPMX20_03386 - putative protein YfgJ, at 3,565,662 to 3,565,883 _03386 MPMX20_03387: MPMX20_03387 - hypothetical protein, at 3,565,936 to 3,566,970 _03387 MPMX20_03388: MPMX20_03388 - Di-/tripeptide transporter, at 3,567,036 to 3,568,577 _03388 Position (kb) 3565 3566 3567Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3564.975 kb on - strand, within MPMX20_03384at 3564.999 kb on - strand, within MPMX20_03384at 3565.008 kb on + strand, within MPMX20_03384at 3565.026 kb on + strand, within MPMX20_03384at 3565.088 kb on - strand, within MPMX20_03384at 3565.156 kb on + strand, within MPMX20_03384at 3565.164 kb on - strand, within MPMX20_03384at 3565.339 kb on + strandat 3565.414 kb on - strand, within MPMX20_03385at 3565.414 kb on - strand, within MPMX20_03385at 3565.500 kb on - strand, within MPMX20_03385at 3565.513 kb on - strand, within MPMX20_03385at 3565.560 kb on + strand, within MPMX20_03385at 3565.570 kb on - strand, within MPMX20_03385at 3565.618 kb on - strand, within MPMX20_03385at 3565.650 kb on - strandat 3565.674 kb on - strandat 3565.813 kb on - strand, within MPMX20_03386at 3565.908 kb on + strandat 3565.932 kb on + strandat 3565.945 kb on - strandat 3565.945 kb on - strandat 3565.961 kb on - strandat 3565.967 kb on - strandat 3566.038 kb on - strandat 3566.064 kb on + strand, within MPMX20_03387at 3566.064 kb on + strand, within MPMX20_03387at 3566.064 kb on + strand, within MPMX20_03387at 3566.066 kb on + strand, within MPMX20_03387at 3566.072 kb on - strand, within MPMX20_03387at 3566.072 kb on - strand, within MPMX20_03387at 3566.072 kb on - strand, within MPMX20_03387at 3566.102 kb on - strand, within MPMX20_03387at 3566.287 kb on + strand, within MPMX20_03387at 3566.436 kb on - strand, within MPMX20_03387at 3566.465 kb on - strand, within MPMX20_03387at 3566.488 kb on + strand, within MPMX20_03387at 3566.579 kb on + strand, within MPMX20_03387at 3566.734 kb on + strand, within MPMX20_03387at 3566.737 kb on - strand, within MPMX20_03387at 3566.754 kb on + strand, within MPMX20_03387at 3566.800 kb on - strand, within MPMX20_03387at 3566.843 kb on + strand, within MPMX20_03387at 3566.930 kb on + strandat 3567.052 kb on + strandat 3567.178 kb on + strandat 3567.178 kb on + strandat 3567.186 kb on - strandat 3567.203 kb on - strand, within MPMX20_03388at 3567.211 kb on + strand, within MPMX20_03388at 3567.229 kb on + strand, within MPMX20_03388at 3567.252 kb on - strand, within MPMX20_03388at 3567.387 kb on - strand, within MPMX20_03388at 3567.566 kb on - strand, within MPMX20_03388at 3567.567 kb on - strand, within MPMX20_03388at 3567.601 kb on + strand, within MPMX20_03388at 3567.609 kb on - strand, within MPMX20_03388at 3567.652 kb on + strand, within MPMX20_03388at 3567.688 kb on - strand, within MPMX20_03388at 3567.690 kb on + strand, within MPMX20_03388at 3567.698 kb on - strand, within MPMX20_03388at 3567.792 kb on + strand, within MPMX20_03388at 3567.844 kb on - strand, within MPMX20_03388at 3567.856 kb on + strand, within MPMX20_03388at 3567.912 kb on + strand, within MPMX20_03388

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (C)
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3,564,975 - MPMX20_03384 0.67 -0.0
3,564,999 - MPMX20_03384 0.69 -0.6
3,565,008 + MPMX20_03384 0.70 -1.9
3,565,026 + MPMX20_03384 0.72 -0.3
3,565,088 - MPMX20_03384 0.78 +0.3
3,565,156 + MPMX20_03384 0.84 -1.1
3,565,164 - MPMX20_03384 0.85 +1.1
3,565,339 + -0.0
3,565,414 - MPMX20_03385 0.28 +0.2
3,565,414 - MPMX20_03385 0.28 -0.3
3,565,500 - MPMX20_03385 0.53 +0.0
3,565,513 - MPMX20_03385 0.56 -0.0
3,565,560 + MPMX20_03385 0.70 -1.7
3,565,570 - MPMX20_03385 0.73 +0.5
3,565,618 - MPMX20_03385 0.86 -2.2
3,565,650 - -0.5
3,565,674 - +1.1
3,565,813 - MPMX20_03386 0.68 -3.1
3,565,908 + +0.7
3,565,932 + +2.0
3,565,945 - +1.1
3,565,945 - +0.8
3,565,961 - +0.5
3,565,967 - +0.9
3,566,038 - +0.5
3,566,064 + MPMX20_03387 0.12 -1.3
3,566,064 + MPMX20_03387 0.12 +1.6
3,566,064 + MPMX20_03387 0.12 +2.0
3,566,066 + MPMX20_03387 0.13 +0.6
3,566,072 - MPMX20_03387 0.13 +0.3
3,566,072 - MPMX20_03387 0.13 -1.2
3,566,072 - MPMX20_03387 0.13 -0.6
3,566,102 - MPMX20_03387 0.16 +0.8
3,566,287 + MPMX20_03387 0.34 -0.2
3,566,436 - MPMX20_03387 0.48 -2.3
3,566,465 - MPMX20_03387 0.51 -0.6
3,566,488 + MPMX20_03387 0.53 -0.3
3,566,579 + MPMX20_03387 0.62 +1.1
3,566,734 + MPMX20_03387 0.77 -1.2
3,566,737 - MPMX20_03387 0.77 -0.8
3,566,754 + MPMX20_03387 0.79 -0.9
3,566,800 - MPMX20_03387 0.83 -0.8
3,566,843 + MPMX20_03387 0.88 -2.2
3,566,930 + -1.2
3,567,052 + -2.1
3,567,178 + +0.3
3,567,178 + +3.0
3,567,186 - +0.7
3,567,203 - MPMX20_03388 0.11 +0.4
3,567,211 + MPMX20_03388 0.11 -0.0
3,567,229 + MPMX20_03388 0.13 -1.5
3,567,252 - MPMX20_03388 0.14 +2.1
3,567,387 - MPMX20_03388 0.23 -1.1
3,567,566 - MPMX20_03388 0.34 +0.2
3,567,567 - MPMX20_03388 0.34 -0.3
3,567,601 + MPMX20_03388 0.37 -1.0
3,567,609 - MPMX20_03388 0.37 +2.0
3,567,652 + MPMX20_03388 0.40 -1.5
3,567,688 - MPMX20_03388 0.42 -2.9
3,567,690 + MPMX20_03388 0.42 -1.2
3,567,698 - MPMX20_03388 0.43 +2.8
3,567,792 + MPMX20_03388 0.49 -1.4
3,567,844 - MPMX20_03388 0.52 -1.0
3,567,856 + MPMX20_03388 0.53 -2.8
3,567,912 + MPMX20_03388 0.57 -2.9

Or see this region's nucleotide sequence