Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03127

Experiment: Thymine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03126 and MPMX20_03127 are separated by 53 nucleotidesMPMX20_03127 and MPMX20_03128 are separated by 171 nucleotides MPMX20_03126: MPMX20_03126 - Colicin I receptor, at 3,283,389 to 3,285,374 _03126 MPMX20_03127: MPMX20_03127 - Lysine-specific permease, at 3,285,428 to 3,286,897 _03127 MPMX20_03128: MPMX20_03128 - HTH-type transcriptional activator CmpR, at 3,287,069 to 3,287,935 _03128 Position (kb) 3285 3286 3287Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3284.535 kb on - strand, within MPMX20_03126at 3284.545 kb on - strand, within MPMX20_03126at 3284.604 kb on - strand, within MPMX20_03126at 3284.614 kb on + strand, within MPMX20_03126at 3284.637 kb on - strand, within MPMX20_03126at 3284.739 kb on + strand, within MPMX20_03126at 3284.740 kb on + strand, within MPMX20_03126at 3284.741 kb on + strand, within MPMX20_03126at 3284.755 kb on - strand, within MPMX20_03126at 3284.786 kb on + strand, within MPMX20_03126at 3284.794 kb on - strand, within MPMX20_03126at 3284.794 kb on - strand, within MPMX20_03126at 3284.818 kb on + strand, within MPMX20_03126at 3284.826 kb on - strand, within MPMX20_03126at 3284.828 kb on + strand, within MPMX20_03126at 3284.828 kb on + strand, within MPMX20_03126at 3284.828 kb on + strand, within MPMX20_03126at 3284.828 kb on + strand, within MPMX20_03126at 3284.828 kb on + strand, within MPMX20_03126at 3284.828 kb on + strand, within MPMX20_03126at 3284.836 kb on - strand, within MPMX20_03126at 3284.836 kb on - strand, within MPMX20_03126at 3284.836 kb on - strand, within MPMX20_03126at 3284.836 kb on - strand, within MPMX20_03126at 3284.836 kb on - strand, within MPMX20_03126at 3284.973 kb on - strand, within MPMX20_03126at 3285.018 kb on + strand, within MPMX20_03126at 3285.061 kb on + strand, within MPMX20_03126at 3285.128 kb on + strand, within MPMX20_03126at 3285.148 kb on + strand, within MPMX20_03126at 3285.198 kb on + strandat 3285.224 kb on + strandat 3285.271 kb on + strandat 3285.271 kb on + strandat 3285.279 kb on - strandat 3285.315 kb on + strandat 3285.341 kb on + strandat 3285.341 kb on + strandat 3285.341 kb on + strandat 3285.341 kb on + strandat 3285.341 kb on + strandat 3285.341 kb on + strandat 3285.341 kb on + strandat 3285.341 kb on + strandat 3285.349 kb on - strandat 3285.349 kb on - strandat 3285.349 kb on - strandat 3285.349 kb on - strandat 3285.349 kb on - strandat 3285.360 kb on + strandat 3285.360 kb on + strandat 3285.406 kb on + strandat 3285.406 kb on + strandat 3285.406 kb on + strandat 3285.406 kb on + strandat 3285.406 kb on + strandat 3285.406 kb on + strandat 3285.406 kb on + strandat 3285.406 kb on + strandat 3285.406 kb on + strandat 3285.414 kb on - strandat 3285.414 kb on - strandat 3285.414 kb on - strandat 3285.414 kb on - strandat 3285.414 kb on - strandat 3285.414 kb on - strandat 3285.414 kb on - strandat 3285.491 kb on - strandat 3285.544 kb on + strandat 3285.544 kb on + strandat 3285.544 kb on + strandat 3285.652 kb on + strand, within MPMX20_03127at 3285.660 kb on - strand, within MPMX20_03127at 3285.851 kb on - strand, within MPMX20_03127at 3285.901 kb on - strand, within MPMX20_03127at 3285.922 kb on + strand, within MPMX20_03127at 3285.985 kb on + strand, within MPMX20_03127at 3285.985 kb on + strand, within MPMX20_03127at 3285.985 kb on + strand, within MPMX20_03127at 3285.985 kb on + strand, within MPMX20_03127at 3285.985 kb on + strand, within MPMX20_03127at 3286.011 kb on + strand, within MPMX20_03127at 3286.011 kb on + strand, within MPMX20_03127at 3286.011 kb on + strand, within MPMX20_03127at 3286.019 kb on - strand, within MPMX20_03127at 3286.019 kb on - strand, within MPMX20_03127at 3286.019 kb on - strand, within MPMX20_03127at 3286.051 kb on + strand, within MPMX20_03127at 3286.051 kb on + strand, within MPMX20_03127at 3286.082 kb on - strand, within MPMX20_03127at 3286.087 kb on + strand, within MPMX20_03127at 3286.096 kb on - strand, within MPMX20_03127at 3286.137 kb on + strand, within MPMX20_03127at 3286.187 kb on + strand, within MPMX20_03127at 3286.239 kb on - strand, within MPMX20_03127at 3286.346 kb on - strand, within MPMX20_03127at 3286.346 kb on - strand, within MPMX20_03127at 3286.372 kb on - strand, within MPMX20_03127at 3286.427 kb on + strand, within MPMX20_03127at 3286.505 kb on - strand, within MPMX20_03127at 3286.505 kb on - strand, within MPMX20_03127at 3286.505 kb on - strand, within MPMX20_03127at 3286.543 kb on + strand, within MPMX20_03127at 3286.543 kb on + strand, within MPMX20_03127at 3286.551 kb on - strand, within MPMX20_03127at 3286.584 kb on - strand, within MPMX20_03127at 3286.586 kb on - strand, within MPMX20_03127at 3286.604 kb on - strand, within MPMX20_03127at 3286.604 kb on - strand, within MPMX20_03127at 3286.613 kb on + strand, within MPMX20_03127at 3286.621 kb on - strand, within MPMX20_03127at 3286.722 kb on - strand, within MPMX20_03127at 3286.722 kb on - strand, within MPMX20_03127at 3286.843 kb on + strandat 3286.919 kb on - strandat 3286.969 kb on + strandat 3286.994 kb on - strandat 3287.046 kb on + strandat 3287.054 kb on - strandat 3287.054 kb on - strandat 3287.136 kb on - strandat 3287.154 kb on + strandat 3287.201 kb on - strand, within MPMX20_03128at 3287.242 kb on + strand, within MPMX20_03128at 3287.242 kb on + strand, within MPMX20_03128at 3287.242 kb on + strand, within MPMX20_03128at 3287.250 kb on - strand, within MPMX20_03128at 3287.250 kb on - strand, within MPMX20_03128at 3287.250 kb on - strand, within MPMX20_03128at 3287.282 kb on - strand, within MPMX20_03128at 3287.284 kb on + strand, within MPMX20_03128at 3287.292 kb on - strand, within MPMX20_03128at 3287.292 kb on - strand, within MPMX20_03128at 3287.311 kb on + strand, within MPMX20_03128at 3287.313 kb on + strand, within MPMX20_03128at 3287.354 kb on + strand, within MPMX20_03128at 3287.354 kb on + strand, within MPMX20_03128at 3287.359 kb on + strand, within MPMX20_03128at 3287.386 kb on - strand, within MPMX20_03128at 3287.500 kb on - strand, within MPMX20_03128at 3287.556 kb on - strand, within MPMX20_03128at 3287.557 kb on - strand, within MPMX20_03128at 3287.723 kb on - strand, within MPMX20_03128at 3287.791 kb on + strand, within MPMX20_03128at 3287.819 kb on + strand, within MPMX20_03128at 3287.824 kb on + strand, within MPMX20_03128at 3287.849 kb on - strandat 3287.849 kb on - strandat 3287.849 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (C)
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3,284,535 - MPMX20_03126 0.58 -0.2
3,284,545 - MPMX20_03126 0.58 +0.9
3,284,604 - MPMX20_03126 0.61 +0.2
3,284,614 + MPMX20_03126 0.62 +0.1
3,284,637 - MPMX20_03126 0.63 +1.1
3,284,739 + MPMX20_03126 0.68 -4.1
3,284,740 + MPMX20_03126 0.68 +0.9
3,284,741 + MPMX20_03126 0.68 -1.7
3,284,755 - MPMX20_03126 0.69 -0.7
3,284,786 + MPMX20_03126 0.70 -0.3
3,284,794 - MPMX20_03126 0.71 -1.0
3,284,794 - MPMX20_03126 0.71 -1.5
3,284,818 + MPMX20_03126 0.72 +0.4
3,284,826 - MPMX20_03126 0.72 +0.2
3,284,828 + MPMX20_03126 0.72 -0.7
3,284,828 + MPMX20_03126 0.72 -1.2
3,284,828 + MPMX20_03126 0.72 +2.1
3,284,828 + MPMX20_03126 0.72 +1.3
3,284,828 + MPMX20_03126 0.72 +0.8
3,284,828 + MPMX20_03126 0.72 -2.4
3,284,836 - MPMX20_03126 0.73 +0.5
3,284,836 - MPMX20_03126 0.73 -2.5
3,284,836 - MPMX20_03126 0.73 -0.5
3,284,836 - MPMX20_03126 0.73 -2.1
3,284,836 - MPMX20_03126 0.73 +1.0
3,284,973 - MPMX20_03126 0.80 -3.5
3,285,018 + MPMX20_03126 0.82 +0.4
3,285,061 + MPMX20_03126 0.84 +0.7
3,285,128 + MPMX20_03126 0.88 +2.2
3,285,148 + MPMX20_03126 0.89 -3.6
3,285,198 + +2.1
3,285,224 + +2.1
3,285,271 + +0.7
3,285,271 + +0.5
3,285,279 - +0.1
3,285,315 + -3.1
3,285,341 + -1.2
3,285,341 + +1.3
3,285,341 + +0.2
3,285,341 + +0.9
3,285,341 + +0.2
3,285,341 + +1.0
3,285,341 + -2.9
3,285,341 + -3.2
3,285,349 - -1.2
3,285,349 - -0.1
3,285,349 - -2.3
3,285,349 - -2.3
3,285,349 - +0.3
3,285,360 + +0.0
3,285,360 + -2.3
3,285,406 + +1.0
3,285,406 + -0.5
3,285,406 + -0.5
3,285,406 + +0.8
3,285,406 + -1.1
3,285,406 + +1.3
3,285,406 + -2.6
3,285,406 + -2.2
3,285,406 + -3.1
3,285,414 - +0.8
3,285,414 - -0.3
3,285,414 - -0.6
3,285,414 - -0.9
3,285,414 - +1.6
3,285,414 - +0.7
3,285,414 - -0.6
3,285,491 - +0.1
3,285,544 + +1.6
3,285,544 + +0.7
3,285,544 + -3.7
3,285,652 + MPMX20_03127 0.15 -0.6
3,285,660 - MPMX20_03127 0.16 +1.0
3,285,851 - MPMX20_03127 0.29 -2.0
3,285,901 - MPMX20_03127 0.32 -1.7
3,285,922 + MPMX20_03127 0.34 -1.7
3,285,985 + MPMX20_03127 0.38 -2.3
3,285,985 + MPMX20_03127 0.38 -0.5
3,285,985 + MPMX20_03127 0.38 -2.0
3,285,985 + MPMX20_03127 0.38 +0.9
3,285,985 + MPMX20_03127 0.38 -3.2
3,286,011 + MPMX20_03127 0.40 -0.8
3,286,011 + MPMX20_03127 0.40 +1.0
3,286,011 + MPMX20_03127 0.40 -2.2
3,286,019 - MPMX20_03127 0.40 -2.7
3,286,019 - MPMX20_03127 0.40 +0.7
3,286,019 - MPMX20_03127 0.40 +0.5
3,286,051 + MPMX20_03127 0.42 -1.2
3,286,051 + MPMX20_03127 0.42 -1.0
3,286,082 - MPMX20_03127 0.44 -2.5
3,286,087 + MPMX20_03127 0.45 -1.3
3,286,096 - MPMX20_03127 0.45 -0.4
3,286,137 + MPMX20_03127 0.48 -2.1
3,286,187 + MPMX20_03127 0.52 -0.7
3,286,239 - MPMX20_03127 0.55 -3.9
3,286,346 - MPMX20_03127 0.62 +0.1
3,286,346 - MPMX20_03127 0.62 -1.2
3,286,372 - MPMX20_03127 0.64 -0.5
3,286,427 + MPMX20_03127 0.68 -0.0
3,286,505 - MPMX20_03127 0.73 +0.8
3,286,505 - MPMX20_03127 0.73 -4.1
3,286,505 - MPMX20_03127 0.73 -1.7
3,286,543 + MPMX20_03127 0.76 +1.0
3,286,543 + MPMX20_03127 0.76 -1.2
3,286,551 - MPMX20_03127 0.76 -0.2
3,286,584 - MPMX20_03127 0.79 -1.8
3,286,586 - MPMX20_03127 0.79 +1.0
3,286,604 - MPMX20_03127 0.80 +0.4
3,286,604 - MPMX20_03127 0.80 -0.2
3,286,613 + MPMX20_03127 0.81 +0.3
3,286,621 - MPMX20_03127 0.81 -1.0
3,286,722 - MPMX20_03127 0.88 +0.3
3,286,722 - MPMX20_03127 0.88 -2.6
3,286,843 + -0.0
3,286,919 - +1.6
3,286,969 + +0.5
3,286,994 - -1.5
3,287,046 + -2.2
3,287,054 - -0.5
3,287,054 - +0.0
3,287,136 - -1.5
3,287,154 + -3.1
3,287,201 - MPMX20_03128 0.15 -1.3
3,287,242 + MPMX20_03128 0.20 -0.4
3,287,242 + MPMX20_03128 0.20 -0.7
3,287,242 + MPMX20_03128 0.20 -0.8
3,287,250 - MPMX20_03128 0.21 +1.5
3,287,250 - MPMX20_03128 0.21 +1.6
3,287,250 - MPMX20_03128 0.21 +2.2
3,287,282 - MPMX20_03128 0.25 +1.0
3,287,284 + MPMX20_03128 0.25 +1.7
3,287,292 - MPMX20_03128 0.26 +0.9
3,287,292 - MPMX20_03128 0.26 +0.1
3,287,311 + MPMX20_03128 0.28 +1.7
3,287,313 + MPMX20_03128 0.28 +0.1
3,287,354 + MPMX20_03128 0.33 +0.9
3,287,354 + MPMX20_03128 0.33 -0.7
3,287,359 + MPMX20_03128 0.33 -4.1
3,287,386 - MPMX20_03128 0.37 +0.4
3,287,500 - MPMX20_03128 0.50 -2.2
3,287,556 - MPMX20_03128 0.56 +1.1
3,287,557 - MPMX20_03128 0.56 +0.6
3,287,723 - MPMX20_03128 0.75 -0.7
3,287,791 + MPMX20_03128 0.83 +0.8
3,287,819 + MPMX20_03128 0.87 -0.6
3,287,824 + MPMX20_03128 0.87 +0.1
3,287,849 - +1.2
3,287,849 - -0.2
3,287,849 - -0.2

Or see this region's nucleotide sequence