Experiment: Thymine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02622 and MPMX20_02623 are separated by 9 nucleotides MPMX20_02623 and MPMX20_02624 are separated by 2 nucleotides MPMX20_02624 and MPMX20_02625 are separated by 228 nucleotides
MPMX20_02622: MPMX20_02622 - Bicarbonate transport ATP-binding protein CmpC, at 2,766,678 to 2,767,466
_02622
MPMX20_02623: MPMX20_02623 - Bicarbonate transport system permease protein CmpB, at 2,767,476 to 2,768,357
_02623
MPMX20_02624: MPMX20_02624 - Nitrate/nitrite binding protein NrtA, at 2,768,360 to 2,769,607
_02624
MPMX20_02625: MPMX20_02625 - Nitrate regulatory protein, at 2,769,836 to 2,771,020
_02625
Position (kb)
2768
2769
2770 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2767.515 kb on - strand at 2767.517 kb on + strand at 2767.519 kb on - strand at 2767.544 kb on + strand at 2767.772 kb on + strand, within MPMX20_02623 at 2767.772 kb on + strand, within MPMX20_02623 at 2767.779 kb on - strand, within MPMX20_02623 at 2767.779 kb on - strand, within MPMX20_02623 at 2767.780 kb on - strand, within MPMX20_02623 at 2767.790 kb on + strand, within MPMX20_02623 at 2767.798 kb on - strand, within MPMX20_02623 at 2767.802 kb on + strand, within MPMX20_02623 at 2767.805 kb on - strand, within MPMX20_02623 at 2767.805 kb on - strand, within MPMX20_02623 at 2767.811 kb on - strand, within MPMX20_02623 at 2767.831 kb on - strand, within MPMX20_02623 at 2767.831 kb on - strand, within MPMX20_02623 at 2767.923 kb on - strand, within MPMX20_02623 at 2767.924 kb on + strand, within MPMX20_02623 at 2767.976 kb on - strand, within MPMX20_02623 at 2768.018 kb on + strand, within MPMX20_02623 at 2768.110 kb on - strand, within MPMX20_02623 at 2768.112 kb on + strand, within MPMX20_02623 at 2768.203 kb on + strand, within MPMX20_02623 at 2768.267 kb on - strand, within MPMX20_02623 at 2768.351 kb on - strand at 2768.367 kb on + strand at 2768.367 kb on + strand at 2768.417 kb on + strand at 2768.516 kb on - strand, within MPMX20_02624 at 2768.518 kb on + strand, within MPMX20_02624 at 2768.549 kb on - strand, within MPMX20_02624 at 2768.664 kb on + strand, within MPMX20_02624 at 2768.674 kb on + strand, within MPMX20_02624 at 2768.674 kb on + strand, within MPMX20_02624 at 2768.677 kb on - strand, within MPMX20_02624 at 2768.841 kb on + strand, within MPMX20_02624 at 2768.864 kb on + strand, within MPMX20_02624 at 2768.872 kb on - strand, within MPMX20_02624 at 2769.050 kb on - strand, within MPMX20_02624 at 2769.050 kb on - strand, within MPMX20_02624 at 2769.095 kb on - strand, within MPMX20_02624 at 2769.096 kb on - strand, within MPMX20_02624 at 2769.251 kb on - strand, within MPMX20_02624 at 2769.367 kb on - strand, within MPMX20_02624 at 2769.372 kb on - strand, within MPMX20_02624 at 2769.466 kb on + strand, within MPMX20_02624 at 2769.474 kb on - strand, within MPMX20_02624 at 2769.501 kb on - strand at 2769.553 kb on - strand at 2769.567 kb on + strand at 2769.676 kb on - strand at 2769.676 kb on - strand at 2769.688 kb on + strand at 2769.790 kb on + strand at 2769.849 kb on - strand at 2769.934 kb on + strand at 2769.939 kb on + strand at 2769.939 kb on + strand at 2769.947 kb on - strand at 2769.947 kb on - strand at 2770.012 kb on + strand, within MPMX20_02625 at 2770.020 kb on - strand, within MPMX20_02625 at 2770.040 kb on - strand, within MPMX20_02625 at 2770.054 kb on + strand, within MPMX20_02625 at 2770.132 kb on + strand, within MPMX20_02625 at 2770.173 kb on - strand, within MPMX20_02625 at 2770.210 kb on + strand, within MPMX20_02625 at 2770.210 kb on + strand, within MPMX20_02625 at 2770.210 kb on + strand, within MPMX20_02625 at 2770.218 kb on + strand, within MPMX20_02625 at 2770.218 kb on - strand, within MPMX20_02625 at 2770.254 kb on + strand, within MPMX20_02625 at 2770.262 kb on - strand, within MPMX20_02625 at 2770.262 kb on - strand, within MPMX20_02625 at 2770.262 kb on - strand, within MPMX20_02625 at 2770.262 kb on - strand, within MPMX20_02625 at 2770.272 kb on - strand, within MPMX20_02625 at 2770.324 kb on - strand, within MPMX20_02625 at 2770.387 kb on - strand, within MPMX20_02625 at 2770.406 kb on + strand, within MPMX20_02625 at 2770.599 kb on - strand, within MPMX20_02625
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine (C) remove 2,767,515 - -0.2 2,767,517 + +0.9 2,767,519 - +0.1 2,767,544 + +0.5 2,767,772 + MPMX20_02623 0.34 +1.6 2,767,772 + MPMX20_02623 0.34 -1.2 2,767,779 - MPMX20_02623 0.34 +0.7 2,767,779 - MPMX20_02623 0.34 +0.0 2,767,780 - MPMX20_02623 0.34 -0.7 2,767,790 + MPMX20_02623 0.36 +1.0 2,767,798 - MPMX20_02623 0.37 +1.5 2,767,802 + MPMX20_02623 0.37 +0.0 2,767,805 - MPMX20_02623 0.37 -1.2 2,767,805 - MPMX20_02623 0.37 -0.9 2,767,811 - MPMX20_02623 0.38 +0.8 2,767,831 - MPMX20_02623 0.40 -1.0 2,767,831 - MPMX20_02623 0.40 -2.7 2,767,923 - MPMX20_02623 0.51 +0.7 2,767,924 + MPMX20_02623 0.51 -0.1 2,767,976 - MPMX20_02623 0.57 -1.6 2,768,018 + MPMX20_02623 0.61 -3.6 2,768,110 - MPMX20_02623 0.72 +0.3 2,768,112 + MPMX20_02623 0.72 +0.4 2,768,203 + MPMX20_02623 0.82 +0.1 2,768,267 - MPMX20_02623 0.90 +0.7 2,768,351 - +0.0 2,768,367 + +1.0 2,768,367 + -1.2 2,768,417 + +1.3 2,768,516 - MPMX20_02624 0.12 -1.4 2,768,518 + MPMX20_02624 0.13 -0.0 2,768,549 - MPMX20_02624 0.15 -0.9 2,768,664 + MPMX20_02624 0.24 -1.9 2,768,674 + MPMX20_02624 0.25 -1.2 2,768,674 + MPMX20_02624 0.25 +2.0 2,768,677 - MPMX20_02624 0.25 +0.0 2,768,841 + MPMX20_02624 0.39 +0.5 2,768,864 + MPMX20_02624 0.40 -2.5 2,768,872 - MPMX20_02624 0.41 -1.5 2,769,050 - MPMX20_02624 0.55 -0.9 2,769,050 - MPMX20_02624 0.55 +0.0 2,769,095 - MPMX20_02624 0.59 -2.4 2,769,096 - MPMX20_02624 0.59 -0.7 2,769,251 - MPMX20_02624 0.71 -0.8 2,769,367 - MPMX20_02624 0.81 -2.5 2,769,372 - MPMX20_02624 0.81 +1.2 2,769,466 + MPMX20_02624 0.89 -0.5 2,769,474 - MPMX20_02624 0.89 -1.3 2,769,501 - +1.1 2,769,553 - +2.4 2,769,567 + -1.9 2,769,676 - +1.0 2,769,676 - +0.4 2,769,688 + -0.5 2,769,790 + +1.7 2,769,849 - -1.8 2,769,934 + -1.6 2,769,939 + -2.1 2,769,939 + -0.4 2,769,947 - +0.6 2,769,947 - -1.0 2,770,012 + MPMX20_02625 0.15 +1.2 2,770,020 - MPMX20_02625 0.16 +0.1 2,770,040 - MPMX20_02625 0.17 -0.5 2,770,054 + MPMX20_02625 0.18 +1.0 2,770,132 + MPMX20_02625 0.25 +0.9 2,770,173 - MPMX20_02625 0.28 -0.3 2,770,210 + MPMX20_02625 0.32 +0.0 2,770,210 + MPMX20_02625 0.32 -0.9 2,770,210 + MPMX20_02625 0.32 -2.3 2,770,218 + MPMX20_02625 0.32 -1.1 2,770,218 - MPMX20_02625 0.32 -1.2 2,770,254 + MPMX20_02625 0.35 +0.5 2,770,262 - MPMX20_02625 0.36 -0.2 2,770,262 - MPMX20_02625 0.36 +2.1 2,770,262 - MPMX20_02625 0.36 -0.4 2,770,262 - MPMX20_02625 0.36 +2.1 2,770,272 - MPMX20_02625 0.37 +0.6 2,770,324 - MPMX20_02625 0.41 -0.6 2,770,387 - MPMX20_02625 0.46 +0.3 2,770,406 + MPMX20_02625 0.48 +1.3 2,770,599 - MPMX20_02625 0.64 -1.4
Or see this region's nucleotide sequence