Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01290

Experiment: Thymine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01289 and MPMX20_01290 are separated by 95 nucleotidesMPMX20_01290 and MPMX20_01291 are separated by 105 nucleotides MPMX20_01289: MPMX20_01289 - Octanoyltransferase, at 1,350,229 to 1,350,870 _01289 MPMX20_01290: MPMX20_01290 - hypothetical protein, at 1,350,966 to 1,351,229 _01290 MPMX20_01291: MPMX20_01291 - D-alanyl-D-alanine carboxypeptidase DacA, at 1,351,335 to 1,352,546 _01291 Position (kb) 1350 1351 1352Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1350.068 kb on + strandat 1350.073 kb on + strandat 1350.073 kb on + strandat 1350.073 kb on + strandat 1350.073 kb on + strandat 1350.080 kb on + strandat 1350.080 kb on + strandat 1350.080 kb on + strandat 1350.080 kb on + strandat 1350.083 kb on + strandat 1350.090 kb on + strandat 1350.090 kb on + strandat 1350.090 kb on + strandat 1350.090 kb on + strandat 1350.090 kb on + strandat 1350.090 kb on + strandat 1350.090 kb on + strandat 1350.090 kb on + strandat 1350.095 kb on + strandat 1350.169 kb on - strandat 1350.177 kb on - strandat 1350.177 kb on - strandat 1350.177 kb on - strandat 1350.177 kb on - strandat 1350.188 kb on + strandat 1350.191 kb on - strandat 1350.264 kb on - strandat 1350.277 kb on - strandat 1350.317 kb on - strand, within MPMX20_01289at 1350.622 kb on - strand, within MPMX20_01289at 1350.808 kb on - strandat 1350.966 kb on + strandat 1350.974 kb on - strandat 1351.505 kb on + strand, within MPMX20_01291at 1351.505 kb on + strand, within MPMX20_01291at 1351.505 kb on + strand, within MPMX20_01291at 1351.505 kb on + strand, within MPMX20_01291at 1351.513 kb on - strand, within MPMX20_01291at 1351.513 kb on - strand, within MPMX20_01291at 1351.513 kb on - strand, within MPMX20_01291at 1351.513 kb on - strand, within MPMX20_01291at 1351.518 kb on - strand, within MPMX20_01291at 1351.523 kb on - strand, within MPMX20_01291at 1351.576 kb on - strand, within MPMX20_01291at 1351.577 kb on - strand, within MPMX20_01291at 1351.600 kb on - strand, within MPMX20_01291at 1351.600 kb on - strand, within MPMX20_01291at 1351.604 kb on + strand, within MPMX20_01291at 1351.612 kb on - strand, within MPMX20_01291at 1351.618 kb on - strand, within MPMX20_01291at 1351.684 kb on + strand, within MPMX20_01291at 1351.760 kb on - strand, within MPMX20_01291at 1351.760 kb on - strand, within MPMX20_01291at 1351.769 kb on - strand, within MPMX20_01291at 1351.769 kb on - strand, within MPMX20_01291at 1351.769 kb on - strand, within MPMX20_01291at 1351.965 kb on - strand, within MPMX20_01291at 1351.978 kb on + strand, within MPMX20_01291at 1351.978 kb on + strand, within MPMX20_01291at 1351.981 kb on - strand, within MPMX20_01291at 1351.991 kb on - strand, within MPMX20_01291at 1351.998 kb on + strand, within MPMX20_01291at 1352.061 kb on + strand, within MPMX20_01291at 1352.138 kb on + strand, within MPMX20_01291at 1352.214 kb on - strand, within MPMX20_01291

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (C)
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1,350,068 + +0.4
1,350,073 + -1.6
1,350,073 + -0.6
1,350,073 + -1.0
1,350,073 + -0.2
1,350,080 + -0.9
1,350,080 + -0.8
1,350,080 + -2.4
1,350,080 + +0.4
1,350,083 + +0.6
1,350,090 + +0.8
1,350,090 + -2.5
1,350,090 + +2.4
1,350,090 + +2.0
1,350,090 + -3.1
1,350,090 + +0.6
1,350,090 + -1.9
1,350,090 + +0.0
1,350,095 + +0.0
1,350,169 - -2.1
1,350,177 - -2.7
1,350,177 - -2.6
1,350,177 - +0.6
1,350,177 - +1.1
1,350,188 + +0.4
1,350,191 - +0.4
1,350,264 - +1.7
1,350,277 - +1.1
1,350,317 - MPMX20_01289 0.14 -0.8
1,350,622 - MPMX20_01289 0.61 +0.4
1,350,808 - -0.8
1,350,966 + +0.3
1,350,974 - +1.2
1,351,505 + MPMX20_01291 0.14 -2.2
1,351,505 + MPMX20_01291 0.14 +0.4
1,351,505 + MPMX20_01291 0.14 -0.5
1,351,505 + MPMX20_01291 0.14 +1.3
1,351,513 - MPMX20_01291 0.15 +0.0
1,351,513 - MPMX20_01291 0.15 -2.2
1,351,513 - MPMX20_01291 0.15 +4.1
1,351,513 - MPMX20_01291 0.15 -1.0
1,351,518 - MPMX20_01291 0.15 +0.8
1,351,523 - MPMX20_01291 0.16 +0.0
1,351,576 - MPMX20_01291 0.20 -0.7
1,351,577 - MPMX20_01291 0.20 +0.7
1,351,600 - MPMX20_01291 0.22 +0.8
1,351,600 - MPMX20_01291 0.22 -2.2
1,351,604 + MPMX20_01291 0.22 -1.2
1,351,612 - MPMX20_01291 0.23 -0.7
1,351,618 - MPMX20_01291 0.23 -3.3
1,351,684 + MPMX20_01291 0.29 +0.3
1,351,760 - MPMX20_01291 0.35 +0.4
1,351,760 - MPMX20_01291 0.35 -0.9
1,351,769 - MPMX20_01291 0.36 -2.2
1,351,769 - MPMX20_01291 0.36 -0.8
1,351,769 - MPMX20_01291 0.36 +1.8
1,351,965 - MPMX20_01291 0.52 -2.2
1,351,978 + MPMX20_01291 0.53 +1.9
1,351,978 + MPMX20_01291 0.53 -3.7
1,351,981 - MPMX20_01291 0.53 +0.2
1,351,991 - MPMX20_01291 0.54 +0.0
1,351,998 + MPMX20_01291 0.55 +1.1
1,352,061 + MPMX20_01291 0.60 -2.9
1,352,138 + MPMX20_01291 0.66 -1.5
1,352,214 - MPMX20_01291 0.73 -0.7

Or see this region's nucleotide sequence