Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00452

Experiment: Thymine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00451 and MPMX20_00452 overlap by 8 nucleotidesMPMX20_00452 and MPMX20_00453 are separated by 85 nucleotidesMPMX20_00453 and MPMX20_00454 are separated by 74 nucleotides MPMX20_00451: MPMX20_00451 - DNA mismatch repair protein MutL, at 465,257 to 467,101 _00451 MPMX20_00452: MPMX20_00452 - tRNA dimethylallyltransferase, at 467,094 to 468,044 _00452 MPMX20_00453: MPMX20_00453 - RNA-binding protein Hfq, at 468,130 to 468,441 _00453 MPMX20_00454: MPMX20_00454 - GTPase HflX, at 468,516 to 469,796 _00454 Position (kb) 467 468 469Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 466.111 kb on - strand, within MPMX20_00451at 466.233 kb on + strand, within MPMX20_00451at 466.263 kb on - strand, within MPMX20_00451at 466.393 kb on + strand, within MPMX20_00451at 466.393 kb on + strand, within MPMX20_00451at 466.396 kb on - strand, within MPMX20_00451at 466.446 kb on + strand, within MPMX20_00451at 466.556 kb on - strand, within MPMX20_00451at 466.605 kb on - strand, within MPMX20_00451at 466.621 kb on + strand, within MPMX20_00451at 466.674 kb on - strand, within MPMX20_00451at 466.700 kb on - strand, within MPMX20_00451at 466.829 kb on + strand, within MPMX20_00451at 466.831 kb on + strand, within MPMX20_00451at 466.839 kb on - strand, within MPMX20_00451at 466.839 kb on - strand, within MPMX20_00451at 466.887 kb on + strand, within MPMX20_00451at 466.989 kb on - strandat 466.991 kb on - strandat 467.004 kb on - strandat 467.034 kb on - strandat 467.034 kb on - strandat 467.034 kb on - strandat 467.106 kb on + strandat 467.159 kb on - strandat 467.202 kb on + strand, within MPMX20_00452at 467.226 kb on - strand, within MPMX20_00452at 467.231 kb on - strand, within MPMX20_00452at 467.279 kb on - strand, within MPMX20_00452at 467.324 kb on + strand, within MPMX20_00452at 467.324 kb on + strand, within MPMX20_00452at 467.324 kb on + strand, within MPMX20_00452at 467.330 kb on + strand, within MPMX20_00452at 467.332 kb on - strand, within MPMX20_00452at 467.389 kb on + strand, within MPMX20_00452at 467.407 kb on - strand, within MPMX20_00452at 467.447 kb on + strand, within MPMX20_00452at 467.447 kb on + strand, within MPMX20_00452at 467.467 kb on - strand, within MPMX20_00452at 467.508 kb on + strand, within MPMX20_00452at 467.516 kb on - strand, within MPMX20_00452at 467.516 kb on - strand, within MPMX20_00452at 467.540 kb on + strand, within MPMX20_00452at 467.545 kb on + strand, within MPMX20_00452at 467.565 kb on + strand, within MPMX20_00452at 467.573 kb on - strand, within MPMX20_00452at 467.573 kb on - strand, within MPMX20_00452at 467.656 kb on + strand, within MPMX20_00452at 467.710 kb on + strand, within MPMX20_00452at 467.710 kb on + strand, within MPMX20_00452at 467.710 kb on + strand, within MPMX20_00452at 467.710 kb on + strand, within MPMX20_00452at 467.718 kb on - strand, within MPMX20_00452at 467.798 kb on - strand, within MPMX20_00452at 467.800 kb on + strand, within MPMX20_00452at 467.836 kb on + strand, within MPMX20_00452at 467.847 kb on + strand, within MPMX20_00452at 467.860 kb on - strand, within MPMX20_00452at 467.923 kb on + strand, within MPMX20_00452at 467.939 kb on + strand, within MPMX20_00452at 467.965 kb on + strandat 467.967 kb on + strandat 467.967 kb on + strandat 468.047 kb on + strandat 468.047 kb on + strandat 468.047 kb on - strandat 468.060 kb on - strandat 468.092 kb on + strandat 468.092 kb on + strandat 468.154 kb on + strandat 468.215 kb on + strand, within MPMX20_00453at 468.223 kb on - strand, within MPMX20_00453at 468.242 kb on + strand, within MPMX20_00453at 468.382 kb on + strand, within MPMX20_00453at 468.399 kb on + strand, within MPMX20_00453at 468.415 kb on + strandat 468.423 kb on - strandat 468.428 kb on - strandat 468.461 kb on - strandat 468.477 kb on - strandat 468.555 kb on + strandat 468.568 kb on - strandat 468.568 kb on - strandat 468.600 kb on - strandat 468.619 kb on + strandat 468.695 kb on + strand, within MPMX20_00454at 468.696 kb on + strand, within MPMX20_00454at 468.767 kb on + strand, within MPMX20_00454at 468.774 kb on + strand, within MPMX20_00454at 468.775 kb on - strand, within MPMX20_00454at 468.878 kb on + strand, within MPMX20_00454at 468.878 kb on + strand, within MPMX20_00454at 468.905 kb on - strand, within MPMX20_00454at 468.907 kb on + strand, within MPMX20_00454at 468.939 kb on - strand, within MPMX20_00454at 468.992 kb on + strand, within MPMX20_00454at 469.024 kb on + strand, within MPMX20_00454at 469.032 kb on - strand, within MPMX20_00454at 469.032 kb on - strand, within MPMX20_00454

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (C)
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466,111 - MPMX20_00451 0.46 -0.6
466,233 + MPMX20_00451 0.53 -1.9
466,263 - MPMX20_00451 0.55 +0.9
466,393 + MPMX20_00451 0.62 +0.2
466,393 + MPMX20_00451 0.62 +1.6
466,396 - MPMX20_00451 0.62 -0.2
466,446 + MPMX20_00451 0.64 -1.2
466,556 - MPMX20_00451 0.70 -3.5
466,605 - MPMX20_00451 0.73 -0.6
466,621 + MPMX20_00451 0.74 -0.2
466,674 - MPMX20_00451 0.77 +0.8
466,700 - MPMX20_00451 0.78 +1.3
466,829 + MPMX20_00451 0.85 -0.2
466,831 + MPMX20_00451 0.85 -0.7
466,839 - MPMX20_00451 0.86 -0.6
466,839 - MPMX20_00451 0.86 +0.6
466,887 + MPMX20_00451 0.88 +1.1
466,989 - -3.6
466,991 - +1.2
467,004 - -0.0
467,034 - +0.4
467,034 - +0.8
467,034 - +0.0
467,106 + -3.1
467,159 - -1.2
467,202 + MPMX20_00452 0.11 -0.9
467,226 - MPMX20_00452 0.14 +1.4
467,231 - MPMX20_00452 0.14 -1.5
467,279 - MPMX20_00452 0.19 -2.2
467,324 + MPMX20_00452 0.24 -2.0
467,324 + MPMX20_00452 0.24 -0.4
467,324 + MPMX20_00452 0.24 +1.5
467,330 + MPMX20_00452 0.25 +0.1
467,332 - MPMX20_00452 0.25 -0.9
467,389 + MPMX20_00452 0.31 -0.4
467,407 - MPMX20_00452 0.33 -0.4
467,447 + MPMX20_00452 0.37 -3.4
467,447 + MPMX20_00452 0.37 -3.0
467,467 - MPMX20_00452 0.39 -2.0
467,508 + MPMX20_00452 0.44 +0.1
467,516 - MPMX20_00452 0.44 +0.4
467,516 - MPMX20_00452 0.44 -0.9
467,540 + MPMX20_00452 0.47 -1.2
467,545 + MPMX20_00452 0.47 -1.0
467,565 + MPMX20_00452 0.50 -2.5
467,573 - MPMX20_00452 0.50 -1.3
467,573 - MPMX20_00452 0.50 -1.2
467,656 + MPMX20_00452 0.59 -2.9
467,710 + MPMX20_00452 0.65 -4.2
467,710 + MPMX20_00452 0.65 +0.3
467,710 + MPMX20_00452 0.65 -0.5
467,710 + MPMX20_00452 0.65 +1.4
467,718 - MPMX20_00452 0.66 -0.9
467,798 - MPMX20_00452 0.74 +0.1
467,800 + MPMX20_00452 0.74 +0.3
467,836 + MPMX20_00452 0.78 -1.7
467,847 + MPMX20_00452 0.79 +1.5
467,860 - MPMX20_00452 0.81 -0.9
467,923 + MPMX20_00452 0.87 -0.9
467,939 + MPMX20_00452 0.89 +2.0
467,965 + -0.3
467,967 + -1.7
467,967 + +0.2
468,047 + +1.2
468,047 + -2.1
468,047 - -0.3
468,060 - -0.2
468,092 + +0.1
468,092 + -2.3
468,154 + -1.4
468,215 + MPMX20_00453 0.27 -1.5
468,223 - MPMX20_00453 0.30 -2.3
468,242 + MPMX20_00453 0.36 -0.2
468,382 + MPMX20_00453 0.81 -1.6
468,399 + MPMX20_00453 0.86 -0.6
468,415 + +1.4
468,423 - -0.9
468,428 - +0.4
468,461 - +0.8
468,477 - -2.5
468,555 + -0.2
468,568 - -1.7
468,568 - +0.4
468,600 - +0.3
468,619 + -1.6
468,695 + MPMX20_00454 0.14 +1.1
468,696 + MPMX20_00454 0.14 -3.2
468,767 + MPMX20_00454 0.20 +0.8
468,774 + MPMX20_00454 0.20 +1.0
468,775 - MPMX20_00454 0.20 -0.0
468,878 + MPMX20_00454 0.28 -1.9
468,878 + MPMX20_00454 0.28 -2.2
468,905 - MPMX20_00454 0.30 -1.0
468,907 + MPMX20_00454 0.31 +1.1
468,939 - MPMX20_00454 0.33 -2.5
468,992 + MPMX20_00454 0.37 -1.9
469,024 + MPMX20_00454 0.40 -0.2
469,032 - MPMX20_00454 0.40 -0.9
469,032 - MPMX20_00454 0.40 -1.6

Or see this region's nucleotide sequence