Experiment: Thymine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00121 and MPMX20_00122 are separated by 246 nucleotides MPMX20_00122 and MPMX20_00123 are separated by 11 nucleotides MPMX20_00123 and MPMX20_00124 are separated by 32 nucleotides MPMX20_00124 and MPMX20_00125 overlap by 1 nucleotides
MPMX20_00121: MPMX20_00121 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 122,886 to 124,430
_00121
MPMX20_00122: MPMX20_00122 - putative protein YibN, at 124,677 to 125,108
_00122
MPMX20_00123: MPMX20_00123 - Glutaredoxin 3, at 125,120 to 125,371
_00123
MPMX20_00124: MPMX20_00124 - Protein-export protein SecB, at 125,404 to 125,871
_00124
MPMX20_00125: MPMX20_00125 - Glycerol-3-phosphate dehydrogenase [NAD(P)+], at 125,871 to 126,890
_00125
Position (kb)
124
125
126 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 123.815 kb on + strand, within MPMX20_00121 at 123.815 kb on + strand, within MPMX20_00121 at 123.823 kb on - strand, within MPMX20_00121 at 123.825 kb on - strand, within MPMX20_00121 at 123.827 kb on + strand, within MPMX20_00121 at 123.855 kb on + strand, within MPMX20_00121 at 123.862 kb on + strand, within MPMX20_00121 at 123.870 kb on - strand, within MPMX20_00121 at 123.951 kb on + strand, within MPMX20_00121 at 124.016 kb on - strand, within MPMX20_00121 at 124.056 kb on + strand, within MPMX20_00121 at 124.074 kb on + strand, within MPMX20_00121 at 124.074 kb on + strand, within MPMX20_00121 at 124.077 kb on - strand, within MPMX20_00121 at 124.114 kb on + strand, within MPMX20_00121 at 124.114 kb on + strand, within MPMX20_00121 at 124.115 kb on - strand, within MPMX20_00121 at 124.117 kb on - strand, within MPMX20_00121 at 124.122 kb on - strand, within MPMX20_00121 at 124.122 kb on - strand, within MPMX20_00121 at 124.127 kb on - strand, within MPMX20_00121 at 124.127 kb on - strand, within MPMX20_00121 at 124.213 kb on + strand, within MPMX20_00121 at 124.227 kb on - strand, within MPMX20_00121 at 124.227 kb on - strand, within MPMX20_00121 at 124.279 kb on - strand at 124.291 kb on + strand at 124.299 kb on - strand at 124.315 kb on - strand at 124.370 kb on - strand at 124.379 kb on + strand at 124.387 kb on - strand at 124.406 kb on - strand at 124.443 kb on + strand at 124.530 kb on - strand at 124.531 kb on - strand at 124.596 kb on - strand at 124.596 kb on - strand at 124.596 kb on - strand at 124.624 kb on + strand at 124.624 kb on + strand at 124.624 kb on + strand at 124.624 kb on + strand at 124.624 kb on + strand at 124.624 kb on + strand at 124.624 kb on + strand at 124.624 kb on + strand at 124.625 kb on + strand at 124.625 kb on + strand at 124.625 kb on + strand at 124.625 kb on - strand at 124.630 kb on + strand at 124.632 kb on - strand at 124.632 kb on - strand at 124.632 kb on - strand at 124.632 kb on - strand at 124.632 kb on - strand at 124.632 kb on - strand at 124.632 kb on - strand at 124.632 kb on - strand at 124.632 kb on - strand at 124.633 kb on - strand at 124.633 kb on - strand at 124.665 kb on + strand at 124.713 kb on + strand at 124.713 kb on + strand at 124.713 kb on + strand at 124.744 kb on + strand, within MPMX20_00122 at 124.751 kb on + strand, within MPMX20_00122 at 124.754 kb on + strand, within MPMX20_00122 at 124.784 kb on + strand, within MPMX20_00122 at 124.792 kb on - strand, within MPMX20_00122 at 124.792 kb on - strand, within MPMX20_00122 at 124.796 kb on + strand, within MPMX20_00122 at 124.930 kb on + strand, within MPMX20_00122 at 124.949 kb on + strand, within MPMX20_00122 at 124.949 kb on + strand, within MPMX20_00122 at 124.957 kb on - strand, within MPMX20_00122 at 124.972 kb on + strand, within MPMX20_00122 at 125.018 kb on + strand, within MPMX20_00122 at 125.018 kb on + strand, within MPMX20_00122 at 125.018 kb on + strand, within MPMX20_00122 at 125.018 kb on + strand, within MPMX20_00122 at 125.018 kb on + strand, within MPMX20_00122 at 125.046 kb on + strand, within MPMX20_00122 at 125.057 kb on + strand, within MPMX20_00122 at 125.120 kb on - strand at 125.180 kb on + strand, within MPMX20_00123 at 125.316 kb on + strand, within MPMX20_00123 at 125.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine (C) remove 123,815 + MPMX20_00121 0.60 -1.2 123,815 + MPMX20_00121 0.60 -0.9 123,823 - MPMX20_00121 0.61 -3.1 123,825 - MPMX20_00121 0.61 -0.6 123,827 + MPMX20_00121 0.61 +0.1 123,855 + MPMX20_00121 0.63 -0.2 123,862 + MPMX20_00121 0.63 +0.5 123,870 - MPMX20_00121 0.64 -0.3 123,951 + MPMX20_00121 0.69 +0.2 124,016 - MPMX20_00121 0.73 +0.2 124,056 + MPMX20_00121 0.76 -0.6 124,074 + MPMX20_00121 0.77 -0.8 124,074 + MPMX20_00121 0.77 +1.3 124,077 - MPMX20_00121 0.77 +2.7 124,114 + MPMX20_00121 0.79 +0.9 124,114 + MPMX20_00121 0.79 -3.8 124,115 - MPMX20_00121 0.80 -2.6 124,117 - MPMX20_00121 0.80 +1.4 124,122 - MPMX20_00121 0.80 +0.1 124,122 - MPMX20_00121 0.80 +0.2 124,127 - MPMX20_00121 0.80 -0.4 124,127 - MPMX20_00121 0.80 -2.8 124,213 + MPMX20_00121 0.86 +0.9 124,227 - MPMX20_00121 0.87 +1.0 124,227 - MPMX20_00121 0.87 -0.6 124,279 - +0.6 124,291 + -3.0 124,299 - -0.4 124,315 - +2.6 124,370 - +0.2 124,379 + -0.8 124,387 - -0.2 124,406 - +0.2 124,443 + -1.4 124,530 - +0.2 124,531 - -2.4 124,596 - +0.9 124,596 - -0.3 124,596 - +1.8 124,624 + -0.5 124,624 + +1.3 124,624 + -0.7 124,624 + +1.3 124,624 + -0.3 124,624 + +0.7 124,624 + +0.8 124,624 + +0.7 124,625 + -0.5 124,625 + +0.5 124,625 + +1.7 124,625 - -0.6 124,630 + -0.0 124,632 - -2.3 124,632 - -0.2 124,632 - -0.2 124,632 - -2.8 124,632 - -0.0 124,632 - +2.6 124,632 - -0.9 124,632 - -1.3 124,632 - +0.3 124,633 - +1.0 124,633 - -0.9 124,665 + -0.3 124,713 + -1.6 124,713 + -0.0 124,713 + +1.9 124,744 + MPMX20_00122 0.16 -1.0 124,751 + MPMX20_00122 0.17 -0.2 124,754 + MPMX20_00122 0.18 -0.8 124,784 + MPMX20_00122 0.25 -0.8 124,792 - MPMX20_00122 0.27 +0.2 124,792 - MPMX20_00122 0.27 -0.8 124,796 + MPMX20_00122 0.28 -0.6 124,930 + MPMX20_00122 0.59 -0.7 124,949 + MPMX20_00122 0.63 -1.4 124,949 + MPMX20_00122 0.63 -2.1 124,957 - MPMX20_00122 0.65 -0.6 124,972 + MPMX20_00122 0.68 -2.8 125,018 + MPMX20_00122 0.79 -0.4 125,018 + MPMX20_00122 0.79 -1.3 125,018 + MPMX20_00122 0.79 -1.0 125,018 + MPMX20_00122 0.79 -1.2 125,018 + MPMX20_00122 0.79 -0.4 125,046 + MPMX20_00122 0.85 +0.2 125,057 + MPMX20_00122 0.88 -1.0 125,120 - -1.0 125,180 + MPMX20_00123 0.24 -0.4 125,316 + MPMX20_00123 0.78 -2.0 125,352 - -2.7
Or see this region's nucleotide sequence