Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02032

Experiment: Cytidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02031 and MPMX20_02032 are separated by 10 nucleotidesMPMX20_02032 and MPMX20_02033 are separated by 50 nucleotides MPMX20_02031: MPMX20_02031 - NAD(P) transhydrogenase subunit alpha, at 2,123,148 to 2,124,677 _02031 MPMX20_02032: MPMX20_02032 - NAD(P) transhydrogenase subunit beta, at 2,124,688 to 2,126,076 _02032 MPMX20_02033: MPMX20_02033 - Universal stress protein E, at 2,126,127 to 2,127,077 _02033 Position (kb) 2124 2125 2126 2127Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2123.732 kb on + strand, within MPMX20_02031at 2123.837 kb on - strand, within MPMX20_02031at 2123.882 kb on + strand, within MPMX20_02031at 2123.882 kb on + strand, within MPMX20_02031at 2123.882 kb on + strand, within MPMX20_02031at 2123.890 kb on - strand, within MPMX20_02031at 2123.908 kb on + strand, within MPMX20_02031at 2123.932 kb on - strand, within MPMX20_02031at 2123.950 kb on + strand, within MPMX20_02031at 2123.968 kb on - strand, within MPMX20_02031at 2124.005 kb on + strand, within MPMX20_02031at 2124.072 kb on + strand, within MPMX20_02031at 2124.078 kb on + strand, within MPMX20_02031at 2124.080 kb on - strand, within MPMX20_02031at 2124.123 kb on - strand, within MPMX20_02031at 2124.123 kb on - strand, within MPMX20_02031at 2124.130 kb on + strand, within MPMX20_02031at 2124.130 kb on + strand, within MPMX20_02031at 2124.133 kb on - strand, within MPMX20_02031at 2124.138 kb on - strand, within MPMX20_02031at 2124.138 kb on - strand, within MPMX20_02031at 2124.202 kb on + strand, within MPMX20_02031at 2124.204 kb on + strand, within MPMX20_02031at 2124.258 kb on - strand, within MPMX20_02031at 2124.270 kb on - strand, within MPMX20_02031at 2124.289 kb on - strand, within MPMX20_02031at 2124.289 kb on - strand, within MPMX20_02031at 2124.329 kb on + strand, within MPMX20_02031at 2124.424 kb on + strand, within MPMX20_02031at 2124.432 kb on - strand, within MPMX20_02031at 2124.443 kb on + strand, within MPMX20_02031at 2124.451 kb on - strand, within MPMX20_02031at 2124.451 kb on - strand, within MPMX20_02031at 2124.461 kb on - strand, within MPMX20_02031at 2124.489 kb on - strand, within MPMX20_02031at 2124.498 kb on + strand, within MPMX20_02031at 2124.551 kb on + strandat 2124.574 kb on + strandat 2124.574 kb on + strandat 2124.640 kb on - strandat 2124.672 kb on + strandat 2124.680 kb on - strandat 2124.680 kb on - strandat 2124.680 kb on - strandat 2124.680 kb on - strandat 2124.680 kb on - strandat 2124.680 kb on - strandat 2124.687 kb on - strandat 2124.692 kb on - strandat 2124.702 kb on + strandat 2124.705 kb on - strandat 2124.710 kb on - strandat 2124.733 kb on - strandat 2124.744 kb on - strandat 2124.773 kb on + strandat 2124.781 kb on - strandat 2124.793 kb on - strandat 2124.817 kb on + strandat 2124.907 kb on - strand, within MPMX20_02032at 2124.999 kb on + strand, within MPMX20_02032at 2125.016 kb on - strand, within MPMX20_02032at 2125.038 kb on + strand, within MPMX20_02032at 2125.043 kb on + strand, within MPMX20_02032at 2125.099 kb on + strand, within MPMX20_02032at 2125.147 kb on + strand, within MPMX20_02032at 2125.174 kb on - strand, within MPMX20_02032at 2125.200 kb on - strand, within MPMX20_02032at 2125.227 kb on + strand, within MPMX20_02032at 2125.257 kb on - strand, within MPMX20_02032at 2125.287 kb on - strand, within MPMX20_02032at 2125.319 kb on - strand, within MPMX20_02032at 2125.386 kb on + strand, within MPMX20_02032at 2125.395 kb on + strand, within MPMX20_02032at 2125.493 kb on + strand, within MPMX20_02032at 2125.547 kb on + strand, within MPMX20_02032at 2125.552 kb on + strand, within MPMX20_02032at 2125.609 kb on - strand, within MPMX20_02032at 2125.627 kb on + strand, within MPMX20_02032at 2125.664 kb on - strand, within MPMX20_02032at 2125.676 kb on + strand, within MPMX20_02032at 2125.697 kb on + strand, within MPMX20_02032at 2125.697 kb on + strand, within MPMX20_02032at 2125.705 kb on - strand, within MPMX20_02032at 2125.739 kb on + strand, within MPMX20_02032at 2125.819 kb on + strand, within MPMX20_02032at 2125.873 kb on - strand, within MPMX20_02032at 2125.949 kb on - strandat 2126.051 kb on - strandat 2126.071 kb on + strandat 2126.159 kb on - strandat 2126.208 kb on + strandat 2126.266 kb on + strand, within MPMX20_02033at 2126.274 kb on - strand, within MPMX20_02033at 2126.276 kb on + strand, within MPMX20_02033at 2126.292 kb on + strand, within MPMX20_02033at 2126.432 kb on - strand, within MPMX20_02033at 2126.432 kb on - strand, within MPMX20_02033at 2126.443 kb on + strand, within MPMX20_02033at 2126.446 kb on - strand, within MPMX20_02033at 2126.488 kb on + strand, within MPMX20_02033at 2126.512 kb on - strand, within MPMX20_02033at 2126.513 kb on + strand, within MPMX20_02033at 2126.519 kb on - strand, within MPMX20_02033at 2126.637 kb on + strand, within MPMX20_02033at 2126.645 kb on - strand, within MPMX20_02033at 2126.693 kb on + strand, within MPMX20_02033at 2126.741 kb on + strand, within MPMX20_02033at 2126.755 kb on - strand, within MPMX20_02033at 2126.756 kb on - strand, within MPMX20_02033at 2126.800 kb on + strand, within MPMX20_02033at 2126.802 kb on - strand, within MPMX20_02033at 2126.845 kb on + strand, within MPMX20_02033at 2126.853 kb on - strand, within MPMX20_02033at 2126.862 kb on + strand, within MPMX20_02033at 2126.898 kb on - strand, within MPMX20_02033at 2126.898 kb on - strand, within MPMX20_02033at 2126.898 kb on - strand, within MPMX20_02033at 2126.936 kb on + strand, within MPMX20_02033at 2126.957 kb on - strand, within MPMX20_02033at 2127.012 kb on + strandat 2127.020 kb on - strandat 2127.035 kb on + strandat 2127.035 kb on + strandat 2127.038 kb on - strandat 2127.043 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (C)
remove
2,123,732 + MPMX20_02031 0.38 -1.2
2,123,837 - MPMX20_02031 0.45 -0.8
2,123,882 + MPMX20_02031 0.48 -0.2
2,123,882 + MPMX20_02031 0.48 -2.6
2,123,882 + MPMX20_02031 0.48 -1.1
2,123,890 - MPMX20_02031 0.48 -0.0
2,123,908 + MPMX20_02031 0.50 -1.2
2,123,932 - MPMX20_02031 0.51 -1.6
2,123,950 + MPMX20_02031 0.52 -1.7
2,123,968 - MPMX20_02031 0.54 +0.1
2,124,005 + MPMX20_02031 0.56 -0.9
2,124,072 + MPMX20_02031 0.60 -0.6
2,124,078 + MPMX20_02031 0.61 -1.3
2,124,080 - MPMX20_02031 0.61 -0.1
2,124,123 - MPMX20_02031 0.64 -0.7
2,124,123 - MPMX20_02031 0.64 +0.8
2,124,130 + MPMX20_02031 0.64 -0.4
2,124,130 + MPMX20_02031 0.64 -0.1
2,124,133 - MPMX20_02031 0.64 -0.7
2,124,138 - MPMX20_02031 0.65 -0.6
2,124,138 - MPMX20_02031 0.65 -0.1
2,124,202 + MPMX20_02031 0.69 -1.4
2,124,204 + MPMX20_02031 0.69 -1.6
2,124,258 - MPMX20_02031 0.73 -1.9
2,124,270 - MPMX20_02031 0.73 -3.1
2,124,289 - MPMX20_02031 0.75 -1.2
2,124,289 - MPMX20_02031 0.75 -1.6
2,124,329 + MPMX20_02031 0.77 -0.3
2,124,424 + MPMX20_02031 0.83 -2.2
2,124,432 - MPMX20_02031 0.84 -1.3
2,124,443 + MPMX20_02031 0.85 -1.1
2,124,451 - MPMX20_02031 0.85 -1.1
2,124,451 - MPMX20_02031 0.85 -0.9
2,124,461 - MPMX20_02031 0.86 -1.6
2,124,489 - MPMX20_02031 0.88 -1.4
2,124,498 + MPMX20_02031 0.88 -0.2
2,124,551 + +0.7
2,124,574 + -0.4
2,124,574 + -0.4
2,124,640 - -0.9
2,124,672 + +2.7
2,124,680 - -0.9
2,124,680 - -0.1
2,124,680 - -1.2
2,124,680 - +0.3
2,124,680 - +1.7
2,124,680 - -1.4
2,124,687 - -1.7
2,124,692 - -0.9
2,124,702 + -0.9
2,124,705 - -0.8
2,124,710 - +0.7
2,124,733 - -0.3
2,124,744 - -1.4
2,124,773 + +0.6
2,124,781 - -0.3
2,124,793 - -2.6
2,124,817 + +0.0
2,124,907 - MPMX20_02032 0.16 -0.8
2,124,999 + MPMX20_02032 0.22 -0.4
2,125,016 - MPMX20_02032 0.24 -2.0
2,125,038 + MPMX20_02032 0.25 -0.3
2,125,043 + MPMX20_02032 0.26 -1.9
2,125,099 + MPMX20_02032 0.30 -1.1
2,125,147 + MPMX20_02032 0.33 -0.3
2,125,174 - MPMX20_02032 0.35 -0.2
2,125,200 - MPMX20_02032 0.37 -1.7
2,125,227 + MPMX20_02032 0.39 -1.0
2,125,257 - MPMX20_02032 0.41 -1.6
2,125,287 - MPMX20_02032 0.43 +0.1
2,125,319 - MPMX20_02032 0.45 -0.6
2,125,386 + MPMX20_02032 0.50 -2.0
2,125,395 + MPMX20_02032 0.51 -1.2
2,125,493 + MPMX20_02032 0.58 -0.9
2,125,547 + MPMX20_02032 0.62 -1.2
2,125,552 + MPMX20_02032 0.62 -0.6
2,125,609 - MPMX20_02032 0.66 -1.1
2,125,627 + MPMX20_02032 0.68 -1.7
2,125,664 - MPMX20_02032 0.70 -1.4
2,125,676 + MPMX20_02032 0.71 +0.5
2,125,697 + MPMX20_02032 0.73 -0.4
2,125,697 + MPMX20_02032 0.73 -0.7
2,125,705 - MPMX20_02032 0.73 -1.2
2,125,739 + MPMX20_02032 0.76 -0.8
2,125,819 + MPMX20_02032 0.81 -0.6
2,125,873 - MPMX20_02032 0.85 -0.5
2,125,949 - -0.7
2,126,051 - +0.5
2,126,071 + -0.0
2,126,159 - -0.5
2,126,208 + -1.6
2,126,266 + MPMX20_02033 0.15 +3.7
2,126,274 - MPMX20_02033 0.15 +1.0
2,126,276 + MPMX20_02033 0.16 +0.0
2,126,292 + MPMX20_02033 0.17 +0.9
2,126,432 - MPMX20_02033 0.32 -1.2
2,126,432 - MPMX20_02033 0.32 -0.7
2,126,443 + MPMX20_02033 0.33 -0.6
2,126,446 - MPMX20_02033 0.34 +1.1
2,126,488 + MPMX20_02033 0.38 -0.5
2,126,512 - MPMX20_02033 0.40 -2.2
2,126,513 + MPMX20_02033 0.41 -1.2
2,126,519 - MPMX20_02033 0.41 -0.2
2,126,637 + MPMX20_02033 0.54 -0.3
2,126,645 - MPMX20_02033 0.54 +0.1
2,126,693 + MPMX20_02033 0.60 -0.3
2,126,741 + MPMX20_02033 0.65 +0.3
2,126,755 - MPMX20_02033 0.66 +0.0
2,126,756 - MPMX20_02033 0.66 -1.1
2,126,800 + MPMX20_02033 0.71 +0.7
2,126,802 - MPMX20_02033 0.71 +0.6
2,126,845 + MPMX20_02033 0.75 -0.3
2,126,853 - MPMX20_02033 0.76 -1.1
2,126,862 + MPMX20_02033 0.77 +1.3
2,126,898 - MPMX20_02033 0.81 +0.4
2,126,898 - MPMX20_02033 0.81 -0.6
2,126,898 - MPMX20_02033 0.81 -0.0
2,126,936 + MPMX20_02033 0.85 -0.1
2,126,957 - MPMX20_02033 0.87 -1.9
2,127,012 + +1.9
2,127,020 - +2.4
2,127,035 + -1.6
2,127,035 + -2.1
2,127,038 - +0.0
2,127,043 - -1.0

Or see this region's nucleotide sequence