Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00149 and MPMX20_00150 overlap by 19 nucleotides MPMX20_00150 and MPMX20_00151 overlap by 4 nucleotides MPMX20_00151 and MPMX20_00152 are separated by 48 nucleotides
MPMX20_00149: MPMX20_00149 - L-ribulose-5-phosphate 3-epimerase UlaE, at 152,709 to 153,569
_00149
MPMX20_00150: MPMX20_00150 - 3-keto-L-gulonate-6-phosphate decarboxylase SgbH, at 153,551 to 154,225
_00150
MPMX20_00151: MPMX20_00151 - L-xylulose/3-keto-L-gulonate kinase, at 154,222 to 155,727
_00151
MPMX20_00152: MPMX20_00152 - Putative tartrate transporter, at 155,776 to 157,095
_00152
Position (kb) 154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 153.223 kb on - strand, within MPMX20_00149 at 153.237 kb on + strand, within MPMX20_00149 at 153.425 kb on - strand, within MPMX20_00149 at 153.432 kb on + strand, within MPMX20_00149 at 153.452 kb on + strand, within MPMX20_00149 at 153.511 kb on + strand at 153.511 kb on + strand at 153.511 kb on + strand at 153.519 kb on - strand at 153.519 kb on - strand at 153.519 kb on - strand at 153.519 kb on - strand at 153.519 kb on - strand at 153.519 kb on - strand at 153.519 kb on - strand at 153.519 kb on - strand at 153.636 kb on + strand, within MPMX20_00150 at 153.705 kb on - strand, within MPMX20_00150 at 153.730 kb on + strand, within MPMX20_00150 at 153.730 kb on + strand, within MPMX20_00150 at 153.753 kb on + strand, within MPMX20_00150 at 153.792 kb on + strand, within MPMX20_00150 at 153.800 kb on - strand, within MPMX20_00150 at 153.832 kb on + strand, within MPMX20_00150 at 153.838 kb on + strand, within MPMX20_00150 at 153.840 kb on - strand, within MPMX20_00150 at 153.840 kb on - strand, within MPMX20_00150 at 153.846 kb on - strand, within MPMX20_00150 at 153.909 kb on + strand, within MPMX20_00150 at 153.914 kb on + strand, within MPMX20_00150 at 153.922 kb on - strand, within MPMX20_00150 at 153.922 kb on - strand, within MPMX20_00150 at 153.953 kb on - strand, within MPMX20_00150 at 153.960 kb on + strand, within MPMX20_00150 at 153.980 kb on + strand, within MPMX20_00150 at 153.980 kb on + strand, within MPMX20_00150 at 153.988 kb on - strand, within MPMX20_00150 at 154.067 kb on + strand, within MPMX20_00150 at 154.089 kb on + strand, within MPMX20_00150 at 154.089 kb on + strand, within MPMX20_00150 at 154.089 kb on + strand, within MPMX20_00150 at 154.097 kb on - strand, within MPMX20_00150 at 154.097 kb on - strand, within MPMX20_00150 at 154.097 kb on - strand, within MPMX20_00150 at 154.097 kb on - strand, within MPMX20_00150 at 154.125 kb on + strand, within MPMX20_00150 at 154.156 kb on + strand, within MPMX20_00150 at 154.180 kb on + strand at 154.183 kb on - strand at 154.228 kb on - strand at 154.255 kb on + strand at 154.255 kb on + strand at 154.255 kb on + strand at 154.260 kb on + strand at 154.263 kb on - strand at 154.310 kb on - strand at 154.333 kb on + strand at 154.394 kb on + strand, within MPMX20_00151 at 154.474 kb on - strand, within MPMX20_00151 at 154.519 kb on - strand, within MPMX20_00151 at 154.532 kb on + strand, within MPMX20_00151 at 154.570 kb on - strand, within MPMX20_00151 at 154.588 kb on + strand, within MPMX20_00151 at 154.596 kb on - strand, within MPMX20_00151 at 154.636 kb on + strand, within MPMX20_00151 at 154.673 kb on - strand, within MPMX20_00151 at 154.750 kb on - strand, within MPMX20_00151 at 154.773 kb on - strand, within MPMX20_00151 at 154.781 kb on + strand, within MPMX20_00151 at 154.789 kb on - strand, within MPMX20_00151 at 154.808 kb on - strand, within MPMX20_00151 at 154.809 kb on + strand, within MPMX20_00151 at 154.832 kb on + strand, within MPMX20_00151 at 154.832 kb on + strand, within MPMX20_00151 at 154.832 kb on + strand, within MPMX20_00151 at 154.832 kb on + strand, within MPMX20_00151 at 154.840 kb on - strand, within MPMX20_00151 at 154.840 kb on - strand, within MPMX20_00151 at 154.840 kb on - strand, within MPMX20_00151 at 154.840 kb on - strand, within MPMX20_00151 at 154.840 kb on - strand, within MPMX20_00151 at 154.853 kb on - strand, within MPMX20_00151 at 154.858 kb on + strand, within MPMX20_00151 at 154.871 kb on + strand, within MPMX20_00151 at 154.887 kb on + strand, within MPMX20_00151 at 154.887 kb on + strand, within MPMX20_00151 at 154.895 kb on - strand, within MPMX20_00151 at 154.924 kb on + strand, within MPMX20_00151 at 154.945 kb on - strand, within MPMX20_00151 at 154.959 kb on - strand, within MPMX20_00151 at 154.962 kb on + strand, within MPMX20_00151 at 155.011 kb on + strand, within MPMX20_00151 at 155.012 kb on + strand, within MPMX20_00151 at 155.012 kb on + strand, within MPMX20_00151 at 155.020 kb on - strand, within MPMX20_00151 at 155.068 kb on + strand, within MPMX20_00151 at 155.095 kb on - strand, within MPMX20_00151 at 155.156 kb on + strand, within MPMX20_00151 at 155.156 kb on + strand, within MPMX20_00151 at 155.167 kb on + strand, within MPMX20_00151 at 155.196 kb on + strand, within MPMX20_00151 at 155.196 kb on + strand, within MPMX20_00151 at 155.204 kb on - strand, within MPMX20_00151 at 155.204 kb on - strand, within MPMX20_00151 at 155.205 kb on + strand, within MPMX20_00151 at 155.228 kb on - strand, within MPMX20_00151 at 155.265 kb on + strand, within MPMX20_00151 at 155.280 kb on + strand, within MPMX20_00151 at 155.289 kb on + strand, within MPMX20_00151 at 155.289 kb on + strand, within MPMX20_00151 at 155.289 kb on + strand, within MPMX20_00151 at 155.297 kb on - strand, within MPMX20_00151 at 155.297 kb on - strand, within MPMX20_00151 at 155.307 kb on - strand, within MPMX20_00151 at 155.307 kb on - strand, within MPMX20_00151 at 155.307 kb on - strand, within MPMX20_00151 at 155.307 kb on - strand, within MPMX20_00151 at 155.307 kb on - strand, within MPMX20_00151 at 155.332 kb on + strand, within MPMX20_00151 at 155.332 kb on - strand, within MPMX20_00151 at 155.378 kb on + strand, within MPMX20_00151 at 155.383 kb on + strand, within MPMX20_00151 at 155.386 kb on - strand, within MPMX20_00151 at 155.388 kb on + strand, within MPMX20_00151 at 155.396 kb on - strand, within MPMX20_00151 at 155.396 kb on - strand, within MPMX20_00151 at 155.409 kb on + strand, within MPMX20_00151 at 155.442 kb on + strand, within MPMX20_00151 at 155.468 kb on + strand, within MPMX20_00151 at 155.476 kb on - strand, within MPMX20_00151 at 155.495 kb on + strand, within MPMX20_00151 at 155.503 kb on - strand, within MPMX20_00151 at 155.549 kb on + strand, within MPMX20_00151 at 155.557 kb on - strand, within MPMX20_00151 at 155.593 kb on + strand at 155.598 kb on + strand at 155.626 kb on - strand at 155.642 kb on + strand at 155.656 kb on + strand at 155.659 kb on + strand at 155.664 kb on - strand at 155.664 kb on - strand at 155.711 kb on - strand at 155.736 kb on + strand at 155.736 kb on + strand at 155.749 kb on - strand at 155.753 kb on + strand at 155.755 kb on + strand at 155.755 kb on + strand at 155.760 kb on + strand at 155.763 kb on - strand at 155.768 kb on - strand at 155.779 kb on + strand at 155.781 kb on + strand at 155.815 kb on - strand at 155.815 kb on - strand at 155.887 kb on + strand at 155.888 kb on + strand at 155.919 kb on - strand, within MPMX20_00152 at 155.962 kb on - strand, within MPMX20_00152 at 155.968 kb on - strand, within MPMX20_00152 at 155.968 kb on - strand, within MPMX20_00152 at 155.973 kb on - strand, within MPMX20_00152 at 155.980 kb on - strand, within MPMX20_00152 at 155.998 kb on + strand, within MPMX20_00152 at 156.011 kb on - strand, within MPMX20_00152 at 156.013 kb on + strand, within MPMX20_00152 at 156.016 kb on - strand, within MPMX20_00152 at 156.040 kb on - strand, within MPMX20_00152 at 156.045 kb on - strand, within MPMX20_00152 at 156.045 kb on - strand, within MPMX20_00152 at 156.094 kb on - strand, within MPMX20_00152 at 156.122 kb on + strand, within MPMX20_00152 at 156.136 kb on - strand, within MPMX20_00152 at 156.163 kb on + strand, within MPMX20_00152 at 156.164 kb on - strand, within MPMX20_00152 at 156.169 kb on - strand, within MPMX20_00152 at 156.264 kb on + strand, within MPMX20_00152 at 156.288 kb on + strand, within MPMX20_00152 at 156.306 kb on - strand, within MPMX20_00152 at 156.313 kb on - strand, within MPMX20_00152 at 156.314 kb on - strand, within MPMX20_00152 at 156.328 kb on - strand, within MPMX20_00152 at 156.336 kb on + strand, within MPMX20_00152 at 156.346 kb on + strand, within MPMX20_00152 at 156.354 kb on - strand, within MPMX20_00152 at 156.384 kb on + strand, within MPMX20_00152 at 156.384 kb on + strand, within MPMX20_00152 at 156.392 kb on - strand, within MPMX20_00152 at 156.392 kb on - strand, within MPMX20_00152 at 156.397 kb on - strand, within MPMX20_00152 at 156.435 kb on + strand, within MPMX20_00152 at 156.435 kb on + strand, within MPMX20_00152 at 156.443 kb on - strand, within MPMX20_00152 at 156.514 kb on + strand, within MPMX20_00152 at 156.604 kb on + strand, within MPMX20_00152 at 156.604 kb on + strand, within MPMX20_00152 at 156.610 kb on + strand, within MPMX20_00152 at 156.636 kb on + strand, within MPMX20_00152 at 156.719 kb on - strand, within MPMX20_00152
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 153,223 - MPMX20_00149 0.60 -1.6 153,237 + MPMX20_00149 0.61 +2.4 153,425 - MPMX20_00149 0.83 -0.2 153,432 + MPMX20_00149 0.84 +0.8 153,452 + MPMX20_00149 0.86 +0.1 153,511 + +0.9 153,511 + -1.3 153,511 + +0.4 153,519 - +1.8 153,519 - +0.4 153,519 - +1.0 153,519 - +0.5 153,519 - -0.6 153,519 - -0.1 153,519 - -0.3 153,519 - -1.5 153,636 + MPMX20_00150 0.13 +0.7 153,705 - MPMX20_00150 0.23 -1.7 153,730 + MPMX20_00150 0.27 -1.5 153,730 + MPMX20_00150 0.27 +0.6 153,753 + MPMX20_00150 0.30 +2.2 153,792 + MPMX20_00150 0.36 +0.7 153,800 - MPMX20_00150 0.37 -1.6 153,832 + MPMX20_00150 0.42 +2.2 153,838 + MPMX20_00150 0.43 +0.4 153,840 - MPMX20_00150 0.43 -1.3 153,840 - MPMX20_00150 0.43 +0.3 153,846 - MPMX20_00150 0.44 +0.8 153,909 + MPMX20_00150 0.53 +0.6 153,914 + MPMX20_00150 0.54 -0.8 153,922 - MPMX20_00150 0.55 +0.1 153,922 - MPMX20_00150 0.55 -2.4 153,953 - MPMX20_00150 0.60 +0.9 153,960 + MPMX20_00150 0.61 -0.3 153,980 + MPMX20_00150 0.64 +0.2 153,980 + MPMX20_00150 0.64 +0.4 153,988 - MPMX20_00150 0.65 -0.6 154,067 + MPMX20_00150 0.76 +1.8 154,089 + MPMX20_00150 0.80 -0.0 154,089 + MPMX20_00150 0.80 +0.7 154,089 + MPMX20_00150 0.80 +0.7 154,097 - MPMX20_00150 0.81 +1.7 154,097 - MPMX20_00150 0.81 -0.0 154,097 - MPMX20_00150 0.81 -0.8 154,097 - MPMX20_00150 0.81 -0.4 154,125 + MPMX20_00150 0.85 -0.1 154,156 + MPMX20_00150 0.90 -0.9 154,180 + -0.6 154,183 - +0.5 154,228 - +0.8 154,255 + +0.7 154,255 + -0.7 154,255 + -0.1 154,260 + +0.4 154,263 - -1.3 154,310 - +1.3 154,333 + -1.0 154,394 + MPMX20_00151 0.11 -0.1 154,474 - MPMX20_00151 0.17 -0.0 154,519 - MPMX20_00151 0.20 +0.3 154,532 + MPMX20_00151 0.21 +0.3 154,570 - MPMX20_00151 0.23 -3.2 154,588 + MPMX20_00151 0.24 -1.5 154,596 - MPMX20_00151 0.25 -1.9 154,636 + MPMX20_00151 0.27 -0.0 154,673 - MPMX20_00151 0.30 -0.6 154,750 - MPMX20_00151 0.35 -0.3 154,773 - MPMX20_00151 0.37 +0.2 154,781 + MPMX20_00151 0.37 -0.6 154,789 - MPMX20_00151 0.38 +0.2 154,808 - MPMX20_00151 0.39 +0.3 154,809 + MPMX20_00151 0.39 -0.6 154,832 + MPMX20_00151 0.41 -0.8 154,832 + MPMX20_00151 0.41 -0.6 154,832 + MPMX20_00151 0.41 +0.2 154,832 + MPMX20_00151 0.41 +0.1 154,840 - MPMX20_00151 0.41 -0.3 154,840 - MPMX20_00151 0.41 -0.5 154,840 - MPMX20_00151 0.41 +0.5 154,840 - MPMX20_00151 0.41 -0.3 154,840 - MPMX20_00151 0.41 +1.0 154,853 - MPMX20_00151 0.42 -1.1 154,858 + MPMX20_00151 0.42 +0.6 154,871 + MPMX20_00151 0.43 -0.0 154,887 + MPMX20_00151 0.44 -1.1 154,887 + MPMX20_00151 0.44 +0.7 154,895 - MPMX20_00151 0.45 -0.0 154,924 + MPMX20_00151 0.47 -0.6 154,945 - MPMX20_00151 0.48 +0.3 154,959 - MPMX20_00151 0.49 -0.3 154,962 + MPMX20_00151 0.49 -0.3 155,011 + MPMX20_00151 0.52 -0.8 155,012 + MPMX20_00151 0.52 -0.1 155,012 + MPMX20_00151 0.52 -1.2 155,020 - MPMX20_00151 0.53 -0.1 155,068 + MPMX20_00151 0.56 +1.3 155,095 - MPMX20_00151 0.58 -0.3 155,156 + MPMX20_00151 0.62 -0.6 155,156 + MPMX20_00151 0.62 -1.6 155,167 + MPMX20_00151 0.63 -0.0 155,196 + MPMX20_00151 0.65 -1.0 155,196 + MPMX20_00151 0.65 -0.8 155,204 - MPMX20_00151 0.65 +0.2 155,204 - MPMX20_00151 0.65 +0.3 155,205 + MPMX20_00151 0.65 -0.4 155,228 - MPMX20_00151 0.67 +3.2 155,265 + MPMX20_00151 0.69 -0.1 155,280 + MPMX20_00151 0.70 +0.3 155,289 + MPMX20_00151 0.71 -0.0 155,289 + MPMX20_00151 0.71 -1.0 155,289 + MPMX20_00151 0.71 -0.2 155,297 - MPMX20_00151 0.71 -0.6 155,297 - MPMX20_00151 0.71 -0.7 155,307 - MPMX20_00151 0.72 -0.8 155,307 - MPMX20_00151 0.72 -0.6 155,307 - MPMX20_00151 0.72 -1.5 155,307 - MPMX20_00151 0.72 +0.1 155,307 - MPMX20_00151 0.72 -1.9 155,332 + MPMX20_00151 0.74 -2.0 155,332 - MPMX20_00151 0.74 +1.0 155,378 + MPMX20_00151 0.77 +0.1 155,383 + MPMX20_00151 0.77 -1.7 155,386 - MPMX20_00151 0.77 +0.6 155,388 + MPMX20_00151 0.77 +1.4 155,396 - MPMX20_00151 0.78 -0.1 155,396 - MPMX20_00151 0.78 -0.9 155,409 + MPMX20_00151 0.79 -0.4 155,442 + MPMX20_00151 0.81 -1.6 155,468 + MPMX20_00151 0.83 -0.4 155,476 - MPMX20_00151 0.83 +1.3 155,495 + MPMX20_00151 0.85 -0.4 155,503 - MPMX20_00151 0.85 -0.6 155,549 + MPMX20_00151 0.88 +0.2 155,557 - MPMX20_00151 0.89 +0.6 155,593 + +2.0 155,598 + -2.4 155,626 - +0.1 155,642 + -0.6 155,656 + -0.1 155,659 + +0.1 155,664 - +0.4 155,664 - -0.9 155,711 - +0.0 155,736 + -0.4 155,736 + +0.6 155,749 - +0.0 155,753 + +1.6 155,755 + -0.5 155,755 + +1.4 155,760 + -0.8 155,763 - -0.1 155,768 - -0.2 155,779 + +0.7 155,781 + -1.8 155,815 - -0.6 155,815 - -0.6 155,887 + -0.2 155,888 + +0.4 155,919 - MPMX20_00152 0.11 +0.5 155,962 - MPMX20_00152 0.14 +0.3 155,968 - MPMX20_00152 0.15 +1.0 155,968 - MPMX20_00152 0.15 -0.6 155,973 - MPMX20_00152 0.15 +0.4 155,980 - MPMX20_00152 0.15 +1.5 155,998 + MPMX20_00152 0.17 +1.2 156,011 - MPMX20_00152 0.18 -0.9 156,013 + MPMX20_00152 0.18 -0.6 156,016 - MPMX20_00152 0.18 -0.4 156,040 - MPMX20_00152 0.20 -0.0 156,045 - MPMX20_00152 0.20 +0.3 156,045 - MPMX20_00152 0.20 +0.2 156,094 - MPMX20_00152 0.24 +0.6 156,122 + MPMX20_00152 0.26 +0.3 156,136 - MPMX20_00152 0.27 -0.3 156,163 + MPMX20_00152 0.29 +0.7 156,164 - MPMX20_00152 0.29 +0.7 156,169 - MPMX20_00152 0.30 +0.0 156,264 + MPMX20_00152 0.37 +1.6 156,288 + MPMX20_00152 0.39 +0.0 156,306 - MPMX20_00152 0.40 -1.0 156,313 - MPMX20_00152 0.41 -1.0 156,314 - MPMX20_00152 0.41 +0.7 156,328 - MPMX20_00152 0.42 -0.6 156,336 + MPMX20_00152 0.42 -0.4 156,346 + MPMX20_00152 0.43 -0.5 156,354 - MPMX20_00152 0.44 -0.9 156,384 + MPMX20_00152 0.46 -0.5 156,384 + MPMX20_00152 0.46 +0.6 156,392 - MPMX20_00152 0.47 -1.4 156,392 - MPMX20_00152 0.47 -0.3 156,397 - MPMX20_00152 0.47 -0.1 156,435 + MPMX20_00152 0.50 +0.7 156,435 + MPMX20_00152 0.50 +0.1 156,443 - MPMX20_00152 0.51 -1.8 156,514 + MPMX20_00152 0.56 -1.0 156,604 + MPMX20_00152 0.63 -0.2 156,604 + MPMX20_00152 0.63 +0.2 156,610 + MPMX20_00152 0.63 -0.6 156,636 + MPMX20_00152 0.65 -0.8 156,719 - MPMX20_00152 0.71 +1.8
Or see this region's nucleotide sequence