Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04408 and MPMX20_04409 are separated by 60 nucleotides MPMX20_04409 and MPMX20_04410 are separated by 65 nucleotides
MPMX20_04408: MPMX20_04408 - Inner membrane metabolite transport protein YhjE, at 4,600,276 to 4,601,598
_04408
MPMX20_04409: MPMX20_04409 - hypothetical protein, at 4,601,659 to 4,603,701
_04409
MPMX20_04410: MPMX20_04410 - Cyclic di-GMP phosphodiesterase PdeH, at 4,603,767 to 4,604,540
_04410
Position (kb)
4601
4602
4603
4604 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4600.668 kb on - strand, within MPMX20_04408 at 4600.682 kb on + strand, within MPMX20_04408 at 4600.682 kb on + strand, within MPMX20_04408 at 4600.688 kb on - strand, within MPMX20_04408 at 4600.690 kb on - strand, within MPMX20_04408 at 4600.776 kb on + strand, within MPMX20_04408 at 4600.868 kb on + strand, within MPMX20_04408 at 4600.871 kb on - strand, within MPMX20_04408 at 4600.876 kb on - strand, within MPMX20_04408 at 4600.907 kb on - strand, within MPMX20_04408 at 4600.963 kb on - strand, within MPMX20_04408 at 4600.992 kb on + strand, within MPMX20_04408 at 4601.034 kb on - strand, within MPMX20_04408 at 4601.036 kb on + strand, within MPMX20_04408 at 4601.055 kb on - strand, within MPMX20_04408 at 4601.062 kb on + strand, within MPMX20_04408 at 4601.064 kb on + strand, within MPMX20_04408 at 4601.072 kb on - strand, within MPMX20_04408 at 4601.084 kb on + strand, within MPMX20_04408 at 4601.092 kb on - strand, within MPMX20_04408 at 4601.102 kb on - strand, within MPMX20_04408 at 4601.146 kb on - strand, within MPMX20_04408 at 4601.216 kb on + strand, within MPMX20_04408 at 4601.217 kb on + strand, within MPMX20_04408 at 4601.264 kb on + strand, within MPMX20_04408 at 4601.306 kb on + strand, within MPMX20_04408 at 4601.306 kb on + strand, within MPMX20_04408 at 4601.306 kb on + strand, within MPMX20_04408 at 4601.314 kb on - strand, within MPMX20_04408 at 4601.314 kb on - strand, within MPMX20_04408 at 4601.314 kb on - strand, within MPMX20_04408 at 4601.316 kb on + strand, within MPMX20_04408 at 4601.321 kb on + strand, within MPMX20_04408 at 4601.339 kb on + strand, within MPMX20_04408 at 4601.353 kb on + strand, within MPMX20_04408 at 4601.361 kb on - strand, within MPMX20_04408 at 4601.394 kb on + strand, within MPMX20_04408 at 4601.409 kb on + strand, within MPMX20_04408 at 4601.417 kb on - strand, within MPMX20_04408 at 4601.432 kb on - strand, within MPMX20_04408 at 4601.443 kb on + strand, within MPMX20_04408 at 4601.452 kb on - strand, within MPMX20_04408 at 4601.478 kb on - strand at 4601.593 kb on + strand at 4601.608 kb on + strand at 4601.618 kb on - strand at 4601.618 kb on - strand at 4601.622 kb on + strand at 4601.622 kb on + strand at 4601.624 kb on + strand at 4601.630 kb on - strand at 4601.634 kb on + strand at 4601.634 kb on + strand at 4601.642 kb on - strand at 4601.642 kb on - strand at 4601.642 kb on - strand at 4601.642 kb on - strand at 4601.696 kb on + strand at 4601.763 kb on + strand at 4601.774 kb on + strand at 4602.003 kb on + strand, within MPMX20_04409 at 4602.011 kb on - strand, within MPMX20_04409 at 4602.092 kb on - strand, within MPMX20_04409 at 4602.155 kb on + strand, within MPMX20_04409 at 4602.295 kb on + strand, within MPMX20_04409 at 4602.298 kb on - strand, within MPMX20_04409 at 4602.343 kb on + strand, within MPMX20_04409 at 4602.351 kb on - strand, within MPMX20_04409 at 4602.402 kb on + strand, within MPMX20_04409 at 4602.405 kb on - strand, within MPMX20_04409 at 4602.410 kb on - strand, within MPMX20_04409 at 4602.417 kb on - strand, within MPMX20_04409 at 4602.477 kb on - strand, within MPMX20_04409 at 4602.530 kb on - strand, within MPMX20_04409 at 4602.558 kb on + strand, within MPMX20_04409 at 4602.565 kb on + strand, within MPMX20_04409 at 4602.608 kb on - strand, within MPMX20_04409 at 4602.621 kb on + strand, within MPMX20_04409 at 4602.671 kb on + strand, within MPMX20_04409 at 4602.698 kb on - strand, within MPMX20_04409 at 4602.768 kb on + strand, within MPMX20_04409 at 4602.790 kb on - strand, within MPMX20_04409 at 4602.867 kb on + strand, within MPMX20_04409 at 4602.867 kb on + strand, within MPMX20_04409 at 4602.875 kb on + strand, within MPMX20_04409 at 4602.883 kb on - strand, within MPMX20_04409 at 4602.925 kb on - strand, within MPMX20_04409 at 4603.063 kb on - strand, within MPMX20_04409 at 4603.134 kb on - strand, within MPMX20_04409 at 4603.229 kb on + strand, within MPMX20_04409 at 4603.237 kb on - strand, within MPMX20_04409 at 4603.596 kb on + strand at 4603.604 kb on - strand at 4603.604 kb on - strand at 4603.604 kb on - strand at 4603.612 kb on + strand at 4603.670 kb on + strand at 4603.670 kb on + strand at 4603.670 kb on + strand at 4603.670 kb on + strand at 4603.765 kb on + strand at 4603.765 kb on + strand at 4603.773 kb on - strand at 4603.773 kb on - strand at 4603.773 kb on - strand at 4603.773 kb on - strand at 4603.792 kb on + strand at 4603.795 kb on - strand at 4603.879 kb on - strand, within MPMX20_04410 at 4603.881 kb on + strand, within MPMX20_04410 at 4603.896 kb on - strand, within MPMX20_04410 at 4603.897 kb on + strand, within MPMX20_04410 at 4603.915 kb on - strand, within MPMX20_04410 at 4603.955 kb on + strand, within MPMX20_04410 at 4603.963 kb on + strand, within MPMX20_04410 at 4603.963 kb on - strand, within MPMX20_04410 at 4603.996 kb on + strand, within MPMX20_04410 at 4603.997 kb on + strand, within MPMX20_04410 at 4604.005 kb on - strand, within MPMX20_04410 at 4604.005 kb on - strand, within MPMX20_04410 at 4604.027 kb on + strand, within MPMX20_04410 at 4604.027 kb on + strand, within MPMX20_04410 at 4604.027 kb on + strand, within MPMX20_04410 at 4604.029 kb on + strand, within MPMX20_04410 at 4604.035 kb on - strand, within MPMX20_04410 at 4604.114 kb on - strand, within MPMX20_04410 at 4604.125 kb on + strand, within MPMX20_04410 at 4604.143 kb on - strand, within MPMX20_04410 at 4604.205 kb on + strand, within MPMX20_04410 at 4604.212 kb on - strand, within MPMX20_04410 at 4604.212 kb on - strand, within MPMX20_04410 at 4604.238 kb on + strand, within MPMX20_04410 at 4604.298 kb on + strand, within MPMX20_04410 at 4604.305 kb on - strand, within MPMX20_04410 at 4604.351 kb on + strand, within MPMX20_04410 at 4604.360 kb on + strand, within MPMX20_04410 at 4604.429 kb on + strand, within MPMX20_04410 at 4604.437 kb on - strand, within MPMX20_04410 at 4604.506 kb on + strand at 4604.509 kb on - strand at 4604.514 kb on - strand at 4604.514 kb on - strand at 4604.578 kb on + strand at 4604.584 kb on + strand at 4604.586 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 4,600,668 - MPMX20_04408 0.30 +1.5 4,600,682 + MPMX20_04408 0.31 +0.5 4,600,682 + MPMX20_04408 0.31 -2.3 4,600,688 - MPMX20_04408 0.31 -0.3 4,600,690 - MPMX20_04408 0.31 -0.7 4,600,776 + MPMX20_04408 0.38 +0.8 4,600,868 + MPMX20_04408 0.45 -0.3 4,600,871 - MPMX20_04408 0.45 +1.7 4,600,876 - MPMX20_04408 0.45 +0.1 4,600,907 - MPMX20_04408 0.48 -0.8 4,600,963 - MPMX20_04408 0.52 +0.3 4,600,992 + MPMX20_04408 0.54 -0.7 4,601,034 - MPMX20_04408 0.57 -0.1 4,601,036 + MPMX20_04408 0.57 +0.1 4,601,055 - MPMX20_04408 0.59 -0.4 4,601,062 + MPMX20_04408 0.59 +0.3 4,601,064 + MPMX20_04408 0.60 +0.2 4,601,072 - MPMX20_04408 0.60 +1.6 4,601,084 + MPMX20_04408 0.61 +1.8 4,601,092 - MPMX20_04408 0.62 -1.1 4,601,102 - MPMX20_04408 0.62 +1.0 4,601,146 - MPMX20_04408 0.66 +0.2 4,601,216 + MPMX20_04408 0.71 +0.0 4,601,217 + MPMX20_04408 0.71 +0.5 4,601,264 + MPMX20_04408 0.75 +0.1 4,601,306 + MPMX20_04408 0.78 +0.6 4,601,306 + MPMX20_04408 0.78 +1.6 4,601,306 + MPMX20_04408 0.78 -0.3 4,601,314 - MPMX20_04408 0.78 -0.5 4,601,314 - MPMX20_04408 0.78 +0.0 4,601,314 - MPMX20_04408 0.78 +0.2 4,601,316 + MPMX20_04408 0.79 +0.3 4,601,321 + MPMX20_04408 0.79 -0.1 4,601,339 + MPMX20_04408 0.80 -0.0 4,601,353 + MPMX20_04408 0.81 -0.6 4,601,361 - MPMX20_04408 0.82 +0.1 4,601,394 + MPMX20_04408 0.85 -1.0 4,601,409 + MPMX20_04408 0.86 -0.7 4,601,417 - MPMX20_04408 0.86 +0.7 4,601,432 - MPMX20_04408 0.87 -0.8 4,601,443 + MPMX20_04408 0.88 -0.1 4,601,452 - MPMX20_04408 0.89 -0.5 4,601,478 - +0.2 4,601,593 + -0.2 4,601,608 + +0.1 4,601,618 - +0.3 4,601,618 - -0.5 4,601,622 + -2.0 4,601,622 + -0.9 4,601,624 + +0.5 4,601,630 - +0.3 4,601,634 + -0.8 4,601,634 + +0.0 4,601,642 - +0.6 4,601,642 - +0.1 4,601,642 - -0.8 4,601,642 - +0.2 4,601,696 + +0.9 4,601,763 + +0.4 4,601,774 + -0.5 4,602,003 + MPMX20_04409 0.17 -0.3 4,602,011 - MPMX20_04409 0.17 +0.4 4,602,092 - MPMX20_04409 0.21 -1.5 4,602,155 + MPMX20_04409 0.24 +0.8 4,602,295 + MPMX20_04409 0.31 -1.0 4,602,298 - MPMX20_04409 0.31 +0.3 4,602,343 + MPMX20_04409 0.33 -0.4 4,602,351 - MPMX20_04409 0.34 -0.2 4,602,402 + MPMX20_04409 0.36 -0.9 4,602,405 - MPMX20_04409 0.37 +0.2 4,602,410 - MPMX20_04409 0.37 -0.5 4,602,417 - MPMX20_04409 0.37 +0.8 4,602,477 - MPMX20_04409 0.40 +0.2 4,602,530 - MPMX20_04409 0.43 -0.1 4,602,558 + MPMX20_04409 0.44 +0.4 4,602,565 + MPMX20_04409 0.44 +0.4 4,602,608 - MPMX20_04409 0.46 +0.0 4,602,621 + MPMX20_04409 0.47 +0.1 4,602,671 + MPMX20_04409 0.50 -0.4 4,602,698 - MPMX20_04409 0.51 -1.3 4,602,768 + MPMX20_04409 0.54 +0.2 4,602,790 - MPMX20_04409 0.55 +0.5 4,602,867 + MPMX20_04409 0.59 -1.0 4,602,867 + MPMX20_04409 0.59 +0.5 4,602,875 + MPMX20_04409 0.60 -0.8 4,602,883 - MPMX20_04409 0.60 -0.1 4,602,925 - MPMX20_04409 0.62 +3.6 4,603,063 - MPMX20_04409 0.69 -0.1 4,603,134 - MPMX20_04409 0.72 +0.6 4,603,229 + MPMX20_04409 0.77 +0.3 4,603,237 - MPMX20_04409 0.77 -0.5 4,603,596 + +1.0 4,603,604 - +0.2 4,603,604 - +0.1 4,603,604 - -0.0 4,603,612 + -0.3 4,603,670 + -0.3 4,603,670 + +0.1 4,603,670 + -0.4 4,603,670 + -0.1 4,603,765 + +0.0 4,603,765 + +1.0 4,603,773 - -0.2 4,603,773 - +0.5 4,603,773 - -0.3 4,603,773 - +0.5 4,603,792 + -0.6 4,603,795 - +1.0 4,603,879 - MPMX20_04410 0.14 +0.2 4,603,881 + MPMX20_04410 0.15 +2.0 4,603,896 - MPMX20_04410 0.17 -0.0 4,603,897 + MPMX20_04410 0.17 +0.8 4,603,915 - MPMX20_04410 0.19 -0.0 4,603,955 + MPMX20_04410 0.24 -0.6 4,603,963 + MPMX20_04410 0.25 -0.4 4,603,963 - MPMX20_04410 0.25 +0.6 4,603,996 + MPMX20_04410 0.30 -0.1 4,603,997 + MPMX20_04410 0.30 +0.7 4,604,005 - MPMX20_04410 0.31 -0.0 4,604,005 - MPMX20_04410 0.31 +0.0 4,604,027 + MPMX20_04410 0.34 -0.2 4,604,027 + MPMX20_04410 0.34 -2.0 4,604,027 + MPMX20_04410 0.34 -0.3 4,604,029 + MPMX20_04410 0.34 +0.2 4,604,035 - MPMX20_04410 0.35 +0.6 4,604,114 - MPMX20_04410 0.45 +1.6 4,604,125 + MPMX20_04410 0.46 +0.2 4,604,143 - MPMX20_04410 0.49 -1.7 4,604,205 + MPMX20_04410 0.57 +0.5 4,604,212 - MPMX20_04410 0.57 +0.2 4,604,212 - MPMX20_04410 0.57 +0.1 4,604,238 + MPMX20_04410 0.61 -0.5 4,604,298 + MPMX20_04410 0.69 +0.1 4,604,305 - MPMX20_04410 0.70 -0.8 4,604,351 + MPMX20_04410 0.75 -1.3 4,604,360 + MPMX20_04410 0.77 -0.0 4,604,429 + MPMX20_04410 0.86 +1.3 4,604,437 - MPMX20_04410 0.87 +0.5 4,604,506 + -0.6 4,604,509 - -0.4 4,604,514 - +1.6 4,604,514 - +0.1 4,604,578 + -1.0 4,604,584 + -1.0 4,604,586 + +0.2
Or see this region's nucleotide sequence