Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00829

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00827 and MPMX20_00828 are separated by 122 nucleotidesMPMX20_00828 and MPMX20_00829 overlap by 4 nucleotidesMPMX20_00829 and MPMX20_00830 are separated by 96 nucleotides MPMX20_00827: MPMX20_00827 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 869,351 to 870,142 _00827 MPMX20_00828: MPMX20_00828 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 870,265 to 870,744 _00828 MPMX20_00829: MPMX20_00829 - Poly(A) polymerase I, at 870,741 to 872,084 _00829 MPMX20_00830: MPMX20_00830 - Glutamyl-Q tRNA(Asp) synthetase, at 872,181 to 873,071 _00830 Position (kb) 870 871 872 873Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 869.742 kb on - strand, within MPMX20_00827at 869.858 kb on - strand, within MPMX20_00827at 869.917 kb on - strand, within MPMX20_00827at 870.027 kb on + strand, within MPMX20_00827at 870.027 kb on - strand, within MPMX20_00827at 870.027 kb on - strand, within MPMX20_00827at 870.027 kb on - strand, within MPMX20_00827at 870.027 kb on - strand, within MPMX20_00827at 870.033 kb on - strand, within MPMX20_00827at 870.035 kb on - strand, within MPMX20_00827at 870.035 kb on - strand, within MPMX20_00827at 870.067 kb on - strandat 870.067 kb on - strandat 870.081 kb on - strandat 870.093 kb on + strandat 870.130 kb on - strandat 870.192 kb on + strandat 870.200 kb on - strandat 870.250 kb on - strandat 870.250 kb on - strandat 870.866 kb on + strandat 870.941 kb on - strand, within MPMX20_00829at 870.941 kb on - strand, within MPMX20_00829at 870.968 kb on + strand, within MPMX20_00829at 871.114 kb on + strand, within MPMX20_00829at 871.153 kb on + strand, within MPMX20_00829at 871.247 kb on - strand, within MPMX20_00829at 871.354 kb on - strand, within MPMX20_00829at 871.372 kb on + strand, within MPMX20_00829at 871.383 kb on + strand, within MPMX20_00829at 871.420 kb on + strand, within MPMX20_00829at 871.428 kb on - strand, within MPMX20_00829at 871.428 kb on - strand, within MPMX20_00829at 871.428 kb on - strand, within MPMX20_00829at 871.428 kb on - strand, within MPMX20_00829at 871.557 kb on - strand, within MPMX20_00829at 871.672 kb on - strand, within MPMX20_00829at 871.732 kb on - strand, within MPMX20_00829at 871.801 kb on + strand, within MPMX20_00829at 871.876 kb on - strand, within MPMX20_00829at 871.971 kb on + strandat 871.988 kb on - strandat 872.023 kb on + strandat 872.097 kb on + strandat 872.097 kb on + strandat 872.105 kb on - strandat 872.105 kb on - strandat 872.138 kb on - strandat 872.187 kb on - strandat 872.328 kb on + strand, within MPMX20_00830at 872.336 kb on - strand, within MPMX20_00830at 872.356 kb on + strand, within MPMX20_00830at 872.395 kb on - strand, within MPMX20_00830at 872.402 kb on - strand, within MPMX20_00830at 872.492 kb on + strand, within MPMX20_00830at 872.492 kb on + strand, within MPMX20_00830at 872.492 kb on + strand, within MPMX20_00830at 872.500 kb on - strand, within MPMX20_00830at 872.500 kb on - strand, within MPMX20_00830at 872.515 kb on - strand, within MPMX20_00830at 872.560 kb on - strand, within MPMX20_00830at 872.690 kb on + strand, within MPMX20_00830at 872.690 kb on + strand, within MPMX20_00830at 872.693 kb on - strand, within MPMX20_00830at 872.693 kb on - strand, within MPMX20_00830at 872.698 kb on - strand, within MPMX20_00830at 872.698 kb on - strand, within MPMX20_00830at 872.698 kb on - strand, within MPMX20_00830at 872.734 kb on - strand, within MPMX20_00830at 872.760 kb on + strand, within MPMX20_00830at 872.769 kb on - strand, within MPMX20_00830at 872.895 kb on + strand, within MPMX20_00830at 872.900 kb on + strand, within MPMX20_00830at 872.974 kb on - strand, within MPMX20_00830at 873.047 kb on + strandat 873.069 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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869,742 - MPMX20_00827 0.49 +0.0
869,858 - MPMX20_00827 0.64 +1.4
869,917 - MPMX20_00827 0.71 -1.0
870,027 + MPMX20_00827 0.85 -0.3
870,027 - MPMX20_00827 0.85 -1.1
870,027 - MPMX20_00827 0.85 +0.7
870,027 - MPMX20_00827 0.85 -0.5
870,027 - MPMX20_00827 0.85 +0.5
870,033 - MPMX20_00827 0.86 +2.8
870,035 - MPMX20_00827 0.86 -0.1
870,035 - MPMX20_00827 0.86 +0.2
870,067 - -1.2
870,067 - -0.3
870,081 - -0.7
870,093 + -0.5
870,130 - -0.8
870,192 + +0.1
870,200 - +0.2
870,250 - +0.9
870,250 - -1.7
870,866 + -0.6
870,941 - MPMX20_00829 0.15 +0.2
870,941 - MPMX20_00829 0.15 -0.2
870,968 + MPMX20_00829 0.17 -1.0
871,114 + MPMX20_00829 0.28 -2.2
871,153 + MPMX20_00829 0.31 -0.8
871,247 - MPMX20_00829 0.38 -3.2
871,354 - MPMX20_00829 0.46 -0.7
871,372 + MPMX20_00829 0.47 -1.0
871,383 + MPMX20_00829 0.48 -3.0
871,420 + MPMX20_00829 0.51 -0.8
871,428 - MPMX20_00829 0.51 -1.5
871,428 - MPMX20_00829 0.51 -3.1
871,428 - MPMX20_00829 0.51 -1.9
871,428 - MPMX20_00829 0.51 -2.8
871,557 - MPMX20_00829 0.61 -2.3
871,672 - MPMX20_00829 0.69 -3.6
871,732 - MPMX20_00829 0.74 -0.8
871,801 + MPMX20_00829 0.79 -1.4
871,876 - MPMX20_00829 0.84 -2.1
871,971 + -1.8
871,988 - -0.9
872,023 + -0.1
872,097 + -1.0
872,097 + -1.5
872,105 - -1.2
872,105 - -3.2
872,138 - -0.7
872,187 - -1.2
872,328 + MPMX20_00830 0.16 +0.2
872,336 - MPMX20_00830 0.17 +0.4
872,356 + MPMX20_00830 0.20 +0.8
872,395 - MPMX20_00830 0.24 +0.4
872,402 - MPMX20_00830 0.25 +1.3
872,492 + MPMX20_00830 0.35 -0.2
872,492 + MPMX20_00830 0.35 +2.2
872,492 + MPMX20_00830 0.35 +0.2
872,500 - MPMX20_00830 0.36 -0.3
872,500 - MPMX20_00830 0.36 +0.6
872,515 - MPMX20_00830 0.37 -1.8
872,560 - MPMX20_00830 0.43 +0.3
872,690 + MPMX20_00830 0.57 -0.1
872,690 + MPMX20_00830 0.57 +0.5
872,693 - MPMX20_00830 0.57 -2.3
872,693 - MPMX20_00830 0.57 +0.2
872,698 - MPMX20_00830 0.58 -0.7
872,698 - MPMX20_00830 0.58 -0.2
872,698 - MPMX20_00830 0.58 -1.0
872,734 - MPMX20_00830 0.62 +0.4
872,760 + MPMX20_00830 0.65 -0.5
872,769 - MPMX20_00830 0.66 -0.1
872,895 + MPMX20_00830 0.80 -0.4
872,900 + MPMX20_00830 0.81 +1.0
872,974 - MPMX20_00830 0.89 +0.3
873,047 + -0.7
873,069 + +0.5

Or see this region's nucleotide sequence